Rw3G007910

Golgi vesicle prefusion complex stabilization

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
7371004 .. 7374933
3930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007910.1

Sequence Viewer

Length: 1314 bp
ATGGCAAGCTCAAGCTCAAGCTCAAGGTCAAGGTCAAGGTCAAGGTCCAAAACCAAAACCCAGACTACGATTAAGGTTAACAGCCCCCACATTGGTAGCATTGTGTTTGACAGTAGCAGCCTTCTTCCATCTCTTTGGGAAGACGGCTACAGGCCAGGCATCGTGGCTGGCCCAGGGGACCCGGAGGACTTGCCTGAAGTTTTCGACAAGGTGATGAACAGCCCTGAAGGCTTTATGAAGAATTTTGTGAAGATGTTTGATAACCTGTTAACAGACGGCTACAAGGACTTGGCTGTGGAGATTGGGAATAGTCTTACGGAAGAGGGTGTTGTACCCCAGATTGTGATCGTGACAGGGATTATTGATGAGTATGCTGAGGCTGGCAAGACCATGGAGGCTCTTTATGTGTTCAGGATGATTTGGGAACATTGTGCCCTCAATGCTTACACTTACAGTGTTATCATCAAAGCACTAGCTGCGGATCCGGAGCCCAATTTTCTTGGGGTTGCCAAGGAATGTGTGATGGAGATGATGGGGAAGGGAATGCAGCCCAATGCCAAGACTTACACGGCCGTGCTTGAGGCGTATGCAGGGCATGAGAAGATGGAGGAGGGCAAGATGTTTCTGCAGGAGATGAAAGCTATTGGGTTTGTGGCAGACAGGAAGGCAATGAGGGAGATGAGAAATGTTCTCAAGACTAAACGATCTCTGGTCAAAACCATCATTGAGATTCTGTTTGATAACTCGGAAGACTATTCAGGTGACTCAGAAGATGATGATGATGCTATAAAGAAGTCCAACAAAATGATGGAATATTTTAACTGCCCTCCTGATGGCTATGTTGGCAGCAAACACGTCATTGAGGACGATCCAGAAAACCCCAAAGATTTGGAACGAGTCTTCGACATAATGTGCAAGACAGAACCCCTCATCCACACTTTCACCAGGATGGTGAACATGCTAAAAAAAGATGGATTTCTGTCCCAAGCCCAGGAGATAAGGGCTGAGTTTGACTTGGGAGGATATATACCTGAAGTCGTGACCCACACCGGCGTCATTGAGATCTATGCCAAGAGCATCCACTTACGGAATGTGGAGGTTGGAGGCTTCACACTCTGCCTCTACCATATCAGATCCCTTGCCTCCGGTCTCCCTCGCCGTGGGATTGTGGACTTCTCGCTCGTCTGCGCCTTCGCCACCTTTGCCTTCGCGTCCTTCATGACGGTGTCGCATCTCAACCTCCGTGTGCGTCTGGTCGCTGCTGCGGTGACTGTTATGGTCTTCCGGGTCTTTAAGCTTGGGGGACATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

48.74

Weight (kDa)

5.59

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1211
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 2 cut(s) 479, 1265
AclWI GGATC 4 cut(s) 476, 489, 863, 1128
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 3 cut(s) 216, 246, 1053
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 4 cut(s) 92, 833, 991, 1160
AflIII ACRYGT 1 cut(s) 853
AjiI CACGTC 1 cut(s) 856
AjnI CCWGG 4 cut(s) 154, 172, 944, 990
AleI CACNNNNGTG 1 cut(s) 572
AloI GAACNNNNNNTCC 2 cut(s) 915, 947
AluBI AGCT 6 cut(s) 9, 15, 21, 476, 641, 1297
AluI AGCT 6 cut(s) 9, 15, 21, 476, 641, 1297
Alw26I GTCTC 1 cut(s) 1154
AlwI GGATC 4 cut(s) 476, 489, 863, 1128
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 3 cut(s) 152, 169, 570
ApeKI GCWGC 6 cut(s) 117, 476, 547, 846, 1259, 1262
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 1 cut(s) 1190
AspS9I GGNCC 3 cut(s) 45, 170, 178
AsuC2I CCSGG 2 cut(s) 182, 1286
AsuHPI GGTGA 5 cut(s) 223, 773, 934, 964, 1279
AvaII GGWCC 2 cut(s) 45, 178
BaeGI GKGCMC 1 cut(s) 436
BamHI GGATCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 4 cut(s) 147, 756, 892, 1273
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 6 cut(s) 129, 463, 559, 858, 1246, 1249
BccI CCATC 9 cut(s) 136, 517, 526, 598, 728, 802, 827, 943, 965
BceAI ACGGC 5 cut(s) 160, 292, 557, 585, 1143
BciT130I CCWGG 4 cut(s) 156, 174, 946, 992
BcnI CCSGG 2 cut(s) 182, 1286
BcoDI GTCTC 1 cut(s) 1154
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 2 cut(s) 148, 626
BglI GCCNNNNNGGC 1 cut(s) 228
BglII AGATCT 1 cut(s) 1062
BisI GCNGC 6 cut(s) 118, 477, 548, 847, 1260, 1263
BlsI GCNGC 6 cut(s) 119, 478, 549, 848, 1261, 1264
Bme1390I CCNGG 6 cut(s) 156, 174, 182, 946, 992, 1286
Bme18I GGWCC 2 cut(s) 45, 178
BmgBI CACGTC 1 cut(s) 856
BmgT120I GGNCC 3 cut(s) 45, 170, 178
BmiI GGNNCC 4 cut(s) 179, 180, 483, 489
BmrFI CCNGG 6 cut(s) 156, 174, 182, 946, 992, 1286
BmsI GCATC 4 cut(s) 168, 772, 1086, 1240
BpiI GAAGAC 4 cut(s) 147, 756, 892, 1273
Bpu10I CCTNAGC 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 7, 599, 677
BpuMI CCSGG 2 cut(s) 182, 1286
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 6 cut(s) 172, 173, 390, 510, 990, 1159
BsaWI WCCGGW 2 cut(s) 484, 1145
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 833, 991, 1160
Bse118I RCCGGY 1 cut(s) 1049
Bse3DI GCAATG 1 cut(s) 675
Bse8I GATNNNNATC 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 4 cut(s) 156, 174, 946, 992
BseDI CCNNGG 6 cut(s) 172, 173, 390, 510, 990, 1159
BseGI GGATG 5 cut(s) 420, 930, 954, 1077, 1306
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 4 cut(s) 92, 833, 991, 1160
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 3 cut(s) 366, 780, 996
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 436
BseX3I CGGCCG 1 cut(s) 570
BseXI GCAGC 6 cut(s) 129, 463, 559, 858, 1246, 1249
Bsh1236I CGCG 1 cut(s) 1211
Bsh1285I CGRYCG 1 cut(s) 573
BshFI GGCC 3 cut(s) 154, 171, 572
BsiEI CGRYCG 1 cut(s) 573
BsiSI CCGG 5 cut(s) 182, 485, 1050, 1146, 1285
BslFI GGGAC 2 cut(s) 191, 967
BslI CCNNNNNNNGG 4 cut(s) 92, 833, 991, 1160
BsmAI GTCTC 1 cut(s) 1154
BsmFI GGGAC 2 cut(s) 191, 967
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 3 cut(s) 154, 171, 572
Bso31I GGTCTC 1 cut(s) 1154
Bsp1286I GDGCHC 2 cut(s) 436, 492
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 2 cut(s) 479, 1265
BspANI GGCC 3 cut(s) 154, 171, 572
BspCNI CTCAG 3 cut(s) 367, 779, 997
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 1 cut(s) 1211
BspHI TCATGA 1 cut(s) 1218
BspLI GGNNCC 4 cut(s) 179, 180, 483, 489
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 4 cut(s) 476, 489, 863, 1128
BspTNI GGTCTC 1 cut(s) 1154
BsrDI GCAATG 1 cut(s) 675
BsrFI RCCGGY 1 cut(s) 1049
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 6 cut(s) 172, 173, 390, 510, 990, 1159
BssMI GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 2 cut(s) 390, 510
Bst2UI CCWGG 4 cut(s) 156, 174, 946, 992
Bst4CI ACNGT 4 cut(s) 113, 455, 1225, 1273
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 1053
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 7, 169, 382
BstDEI CTNAG 3 cut(s) 375, 766, 1005
BstDSI CCRYGG 2 cut(s) 390, 1159
BstF5I GGATG 5 cut(s) 420, 930, 954, 1077, 1306
BstFNI CGCG 1 cut(s) 1211
BstHHI GCGC 1 cut(s) 1190
BstKTI GATC 6 cut(s) 348, 484, 707, 871, 1065, 1136
BstMAI GTCTC 1 cut(s) 1154
BstMBI GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
BstMCI CGRYCG 1 cut(s) 573
BstMWI GCNNNNNNNGC 5 cut(s) 228, 440, 476, 843, 1202
BstNI CCWGG 4 cut(s) 156, 174, 946, 992
BstNSI RCATGY 1 cut(s) 961
BstSCI CCNGG 6 cut(s) 154, 172, 180, 944, 990, 1284
BstSFI CTRYAG 2 cut(s) 148, 626
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 1211
BstV1I GCAGC 6 cut(s) 129, 463, 559, 858, 1246, 1249
BstV2I GAAGAC 4 cut(s) 147, 756, 892, 1273
BstX2I RGATCY 3 cut(s) 481, 1062, 1133
BstXI CCANNNNNNTGG 2 cut(s) 135, 889
BstYI RGATCY 3 cut(s) 481, 1062, 1133
BstZI CGGCCG 1 cut(s) 570
BsuRI GGCC 3 cut(s) 154, 171, 572
BtgI CCRYGG 2 cut(s) 390, 1159
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 5 cut(s) 420, 930, 954, 1077, 1306
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 3 cut(s) 7, 169, 382
CciI TCATGA 1 cut(s) 1218
CfoI GCGC 1 cut(s) 1190
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 3 cut(s) 45, 170, 178
CseI GACGC 3 cut(s) 1042, 1200, 1238
Csp6I GTAC 1 cut(s) 332
CviAII CATG 4 cut(s) 391, 596, 958, 1219
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 375, 766, 1005
DpnI GATC 6 cut(s) 347, 483, 706, 870, 1064, 1135
DpnII GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
EaeI YGGCCR 1 cut(s) 570
EagI CGGCCG 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EclXI CGGCCG 1 cut(s) 570
Eco130I CCWWGG 2 cut(s) 390, 510
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 1154
Eco47I GGWCC 2 cut(s) 45, 178
Eco52I CGGCCG 1 cut(s) 570
Eco57I CTGAAG 3 cut(s) 216, 246, 1053
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 4 cut(s) 154, 172, 944, 990
EcoT14I CCWWGG 2 cut(s) 390, 510
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 390, 510
FaeI CATG 4 cut(s) 394, 599, 961, 1222
FaqI GGGAC 2 cut(s) 191, 967
FatI CATG 4 cut(s) 390, 595, 957, 1218
Fnu4HI GCNGC 6 cut(s) 118, 477, 548, 847, 1260, 1263
FokI GGATG 5 cut(s) 427, 917, 961, 1064, 1293
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 6 cut(s) 118, 477, 548, 847, 1260, 1263
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 1189
GluI GCNGC 6 cut(s) 118, 477, 548, 847, 1260, 1263
HaeIII GGCC 3 cut(s) 154, 171, 572
HapII CCGG 5 cut(s) 182, 485, 1050, 1146, 1285
HgaI GACGC 3 cut(s) 1042, 1200, 1238
HhaI GCGC 1 cut(s) 1190
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 4 cut(s) 394, 599, 961, 1222
Hin6I GCGC 1 cut(s) 1188
HinP1I GCGC 1 cut(s) 1188
HincII GTYRAC 2 cut(s) 79, 270
HindII GTYRAC 2 cut(s) 79, 270
HindIII AAGCTT 1 cut(s) 1295
HinfI GANTC 3 cut(s) 730, 764, 897
HpaI GTTAAC 2 cut(s) 79, 270
HpaII CCGG 5 cut(s) 182, 485, 1050, 1146, 1285
HphI GGTGA 5 cut(s) 223, 773, 934, 964, 1279
Hpy166II GTNNAC 4 cut(s) 79, 270, 955, 1171
Hpy188I TCNGA 3 cut(s) 748, 769, 1133
Hpy188III TCNNGA 8 cut(s) 349, 412, 485, 694, 830, 872, 1039, 1219
Hpy8I GTNNAC 4 cut(s) 79, 270, 955, 1171
HpyAV CCTTC 7 cut(s) 131, 221, 532, 658, 1201, 1216, 1225
HpyCH4III ACNGT 4 cut(s) 113, 455, 1225, 1273
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 4 cut(s) 547, 590, 628, 915
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 440, 476, 843, 1202
HpyF3I CTNAG 3 cut(s) 375, 766, 1005
HpySE526I ACGT 1 cut(s) 855
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 4 cut(s) 394, 599, 961, 1222
HspAI GCGC 1 cut(s) 1188
KflI GGGWCCC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 484
KspAI GTTAAC 2 cut(s) 79, 270
Kzo9I GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 6 cut(s) 129, 463, 559, 858, 1246, 1249
LweI GCATC 4 cut(s) 168, 772, 1086, 1240
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 4 cut(s) 349, 761, 1039, 1267
MalI GATC 6 cut(s) 347, 483, 706, 870, 1064, 1135
MboI GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
MflI RGATCY 3 cut(s) 481, 1062, 1133
MhlI GDGCHC 2 cut(s) 436, 492
MluCI AATT 2 cut(s) 241, 493
MlyI GAGTC 2 cut(s) 758, 906
MmeI TCCRAC 2 cut(s) 822, 1081
MroI TCCGGA 1 cut(s) 484
MseI TTAA 5 cut(s) 72, 78, 269, 819, 1293
MslI CAYNNNNRTG 3 cut(s) 572, 947, 1223
MspI CCGG 5 cut(s) 182, 485, 1050, 1146, 1285
MspR9I CCNGG 6 cut(s) 156, 174, 182, 946, 992, 1286
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 4 cut(s) 156, 174, 946, 992
MvnI CGCG 1 cut(s) 1211
MwoI GCNNNNNNNGC 5 cut(s) 228, 440, 476, 843, 1202
NciI CCSGG 2 cut(s) 182, 1286
NcoI CCATGG 1 cut(s) 390
NdeII GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
NlaIII CATG 4 cut(s) 394, 599, 961, 1222
NlaIV GGNNCC 4 cut(s) 179, 180, 483, 489
NmuCI GTSAC 4 cut(s) 349, 761, 1039, 1267
NspI RCATGY 1 cut(s) 961
OliI CACNNNNGTG 1 cut(s) 572
PagI TCATGA 1 cut(s) 1218
PasI CCCWGGG 1 cut(s) 173
PctI GAATGC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 730
PflFI GACNNNGTC 1 cut(s) 1225
PkrI GCNGC 6 cut(s) 119, 478, 549, 848, 1261, 1264
PleI GAGTC 2 cut(s) 758, 905
PpsI GAGTC 2 cut(s) 758, 905
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 4 cut(s) 154, 172, 944, 990
PspGI CCWGG 4 cut(s) 154, 172, 944, 990
PspN4I GGNNCC 4 cut(s) 179, 180, 483, 489
PspPI GGNCC 3 cut(s) 45, 170, 178
PspPPI RGGWCCY 1 cut(s) 178
PstI CTGCAG 1 cut(s) 630
PsuI RGATCY 3 cut(s) 481, 1062, 1133
PsyI GACNNNGTC 1 cut(s) 1225
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 3 cut(s) 572, 947, 1223
SaqAI TTAA 5 cut(s) 72, 78, 269, 819, 1293
SatI GCNGC 6 cut(s) 118, 477, 548, 847, 1260, 1263
Sau3AI GATC 6 cut(s) 345, 481, 704, 868, 1062, 1133
Sau96I GGNCC 3 cut(s) 45, 170, 178
SchI GAGTC 2 cut(s) 758, 906
ScrFI CCNGG 6 cut(s) 156, 174, 182, 946, 992, 1286
SduI GDGCHC 2 cut(s) 436, 492
SfaNI GCATC 4 cut(s) 168, 772, 1086, 1240
SfcI CTRYAG 2 cut(s) 148, 626
SgrAI CRCCGGYG 1 cut(s) 1049
SinI GGWCC 2 cut(s) 45, 178
SmiMI CAYNNNNRTG 3 cut(s) 572, 947, 1223
SmlI CTYRAG 5 cut(s) 10, 16, 22, 578, 692
SmoI CTYRAG 5 cut(s) 10, 16, 22, 578, 692
Sse9I AATT 2 cut(s) 241, 493
SsiI CCGC 2 cut(s) 479, 1265
SspI AATATT 1 cut(s) 815
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 6 cut(s) 154, 172, 180, 944, 990, 1284
StyI CCWWGG 2 cut(s) 390, 510
TaaI ACNGT 4 cut(s) 113, 455, 1225, 1273
TaiI ACGT 1 cut(s) 858
TaqI TCGA 2 cut(s) 204, 903
TasI AATT 2 cut(s) 241, 493
TfiI GAWTC 1 cut(s) 730
Tru1I TTAA 5 cut(s) 72, 78, 269, 819, 1293
Tru9I TTAA 5 cut(s) 72, 78, 269, 819, 1293
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 4 cut(s) 349, 761, 1039, 1267
TseI GCWGC 6 cut(s) 117, 476, 547, 846, 1259, 1262
Tsp45I GTSAC 4 cut(s) 349, 761, 1039, 1267
TspDTI ATGAA 4 cut(s) 230, 251, 650, 1207
TspGWI ACGGA 3 cut(s) 332, 1102, 1232
TspRI CASTG 1 cut(s) 460
Tth111I GACNNNGTC 1 cut(s) 1225
VpaK11BI GGWCC 2 cut(s) 45, 178
XapI RAATTY 1 cut(s) 241
XceI RCATGY 1 cut(s) 961
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.