Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008869

Physical Location & Seq

Genomic Coordinates Forward (+)

41706211 .. 41708925

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAAGCAAAGGCTCCAAATCCAAAACCAAGATTAGCACGATCAAGATTAACAGCCCCCACTGTAGCGACATTGTCTTTGATACCCCCATTCCTTCATGTCCTTGGAAAGACGGCGAGGGGTTCACCATTGGCCTTGGACCAGGAGACCCCGAGGACTTGCCGGAAGTTTTCGACAAGGTTAGGAACACCAGTGAAGGCTTTTTGAAGAGTTTTGTCAAGATGTTCGACAATTTGGTTACAGACGGGTACATGGACTTGGCTATGGAGATTGGGAATCTATACGCTGACCACGGTGTTCTACTCCCAGTTGTGACCTTGACCGGCATCATTGATGAGTATGCCGAAGCCGGCAAGACTGCTGAGGCTCTCCATGTGTACCGGATAATGTTGGATTCTGAAGATTGTGCCCCCAATGCTTACACTTGTAGTGTGATCATCAGGGCTCTGGCTGCAGACCCGGACCCCAATTTTCATGTTGTTGCCAAGGAGTTTGTGATGGAGATGATGGGGAAGGGATGGCAGCCGAATGCCAGCACATACACTGCTGTGTTTGAGGCGTTTGCAGGTCAGGAGAAGATGGAGGAGGCCAAGCAGTTTCTGGAGGAGATGAAAGCTAGTGGGTTTGTGGCTGACAAGAAAGCAATGAGGGCTTTCAGAAAGGTTCTAAAGGTTAAAGGGCCTGTTGTCAAAAGCATTTTCGATATTCTATTTGATAACTTTGATGACTATTCAGACGAGTCAGATGATGATGATGTTGTAAAGAAGTGCACCAAAGACTTTGACTGGTCGAAATACCCCCCTGAGAGCTATGTTCCTTTTAGCAAGAAACAAGTCATTGAGGACGACCCAGAAAACCCCAAAGATTTGGAGCAAAAGTTCGACACAATGCACAGGAATGGAGCCCTCGTCAGCACTGTGACCAGGATGCTCAACATGCTAAAAAATGATGGATTCTTGTCCCAAGCCGAGGAGATCAGGACTGCGTTAGAAGTGGATCATAATCTGCCTGAAGTCGTGACTCATACTGGTGTCATTGAGATCTATGGCAGGCATGATGAGGCCAAGCATGCTCTCAAGGTGTTTTTGCGCATGTTATCCCTTGGAATTTCCCCAAACGCATACACTTACAGTGTCCTCATTAAGGCACTCGCTAAAGACTCCAACTTTCTTGGTGATGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

395

Amino Acids

44.05

Weight (kDa)

4.95

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	2.1e-07	PPR repeat family
PPR_2	PF13041	337 - 386	1.7e-11	PPR repeat family
PPR_3	PF13812	337 - 384	9e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08910 FvH4_6g08910 FvH4_6g08910
rosa_chinensis	RchiOBHm_Chr3g0459171 RchiOBHm_Chr3g0459201
rosa_laevigata	RLG00000025104 RLG00000025106
rosa_multiflora	Rmu_co8387405.1_g000001 Rmu_sc0002435.1_g000014 Rmu_sc0002435.1_g000016 Rmu_sc0014208.1_g000003 Rmu_sc0014208.1_g000008
rosa_roxburghii	Rroxscaffold_6G00420420 Rroxscaffold_6G00420450
rosa_rugosa	Rorug03G0034000 Rorug03G0034100 Rorug03G0034200
rosa_samantha	Rh3AG092200 Rh3CG095900 Rh3CG096100 Rh3DG095900
rosa_wichuraiana	Rw3G007890 Rw3G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1091
Acc36I	ACCTGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	1005
AcsI	RAATTY	1 cut(s)	1107
AcuI	CTGAAG	2 cut(s)	420, 1032
AfaI	GTAC	2 cut(s)	251, 380
AfiI	CCNNNNNNNGG	2 cut(s)	970, 1144
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	142, 923
AleI	CACNNNNGTG	1 cut(s)	548
AloI	GAACNNNNNNTCC	2 cut(s)	863, 895
AluBI	AGCT	2 cut(s)	617, 810
AluI	AGCT	2 cut(s)	617, 810
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	141
Alw44I	GTGCAC	1 cut(s)	769
AlwI	GGATC	1 cut(s)	1005
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	133, 588, 680, 1062
ApaLI	GTGCAC	1 cut(s)	769
ApeKI	GCWGC	2 cut(s)	452, 523
ApoI	RAATTY	1 cut(s)	1107
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	1092
AspS9I	GGNCC	3 cut(s)	140, 463, 680
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	118, 1187
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	140, 463
BaeGI	GKGCMC	2 cut(s)	412, 773
BanII	GRGCYC	2 cut(s)	448, 907
Bbv12I	GWGCWC	1 cut(s)	773
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	439, 535
BccI	CCATC	5 cut(s)	493, 502, 513, 574, 944
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	144, 925
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	2 cut(s)	64, 453
BfuAI	ACCTGC	1 cut(s)	557
BglII	AGATCT	1 cut(s)	1041
BisI	GCNGC	2 cut(s)	453, 524
BlsI	GCNGC	2 cut(s)	454, 525
Bme1390I	CCNGG	3 cut(s)	144, 461, 925
Bme18I	GGWCC	2 cut(s)	140, 463
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	140, 463, 680
BmiI	GGNNCC	3 cut(s)	16, 465, 904
BmrFI	CCNGG	3 cut(s)	144, 461, 925
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	3 cut(s)	336, 918, 1168
BmuI	ACTGGG	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	1061
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	7 cut(s)	104, 136, 153, 292, 486, 969, 1102
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	4 cut(s)	863, 893, 894, 924
Bsc4I	CCNNNNNNNGG	2 cut(s)	970, 1144
Bse118I	RCCGGY	2 cut(s)	323, 350
Bse1I	ACTGG	4 cut(s)	192, 308, 791, 1033
Bse3DI	GCAATG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	2 cut(s)	144, 925
BseDI	CCNNGG	7 cut(s)	104, 136, 153, 292, 486, 969, 1102
BseGI	GGATG	2 cut(s)	524, 933
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	2 cut(s)	970, 1144
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	354, 795
BseNI	ACTGG	4 cut(s)	192, 308, 791, 1033
BseRI	GAGGAG	3 cut(s)	599, 620, 986
BseSI	GKGCMC	2 cut(s)	412, 773
BseXI	GCAGC	2 cut(s)	439, 535
BshFI	GGCC	4 cut(s)	135, 590, 682, 1064
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	5 cut(s)	164, 324, 351, 382, 461
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	2 cut(s)	970, 1144
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	135, 590, 682, 1064
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	4 cut(s)	412, 448, 773, 907
Bsp143I	GATC	5 cut(s)	42, 435, 975, 997, 1041
BspANI	GGCC	4 cut(s)	135, 590, 682, 1064
BspCNI	CTCAG	2 cut(s)	355, 796
BspLI	GGNNCC	3 cut(s)	16, 465, 904
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	1005
BspTNI	GGTCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	651
BsrFI	RCCGGY	2 cut(s)	323, 350
BsrI	ACTGG	4 cut(s)	192, 308, 791, 1033
BssAI	RCCGGY	2 cut(s)	323, 350
BssECI	CCNNGG	7 cut(s)	104, 136, 153, 292, 486, 969, 1102
BssMI	GATC	5 cut(s)	42, 435, 975, 997, 1041
BssT1I	CCWWGG	4 cut(s)	104, 136, 486, 1102
Bst2UI	CCWGG	2 cut(s)	144, 925
Bst4CI	ACNGT	4 cut(s)	65, 296, 919, 1133
Bst6I	CTCTTC	1 cut(s)	203
BstC8I	GCNNGC	5 cut(s)	7, 352, 535, 1052, 1071
BstDEI	CTNAG	2 cut(s)	363, 804
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	1142
BstF5I	GGATG	2 cut(s)	524, 933
BstHHI	GCGC	1 cut(s)	1092
BstKTI	GATC	5 cut(s)	45, 438, 978, 1000, 1044
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	42, 435, 975, 997, 1041
BstMWI	GCNNNNNNNGC	5 cut(s)	416, 452, 650, 937, 1070
BstNI	CCWGG	2 cut(s)	144, 925
BstNSI	RCATGY	3 cut(s)	940, 1073, 1096
BstSCI	CCNGG	3 cut(s)	142, 459, 923
BstSFI	CTRYAG	2 cut(s)	64, 453
BstSLI	GKGCMC	2 cut(s)	412, 773
BstV1I	GCAGC	2 cut(s)	439, 535
BstX2I	RGATCY	1 cut(s)	1041
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	1041
BsuRI	GGCC	4 cut(s)	135, 590, 682, 1064
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	524, 933
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	5 cut(s)	61, 199, 543, 915, 1138
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	5 cut(s)	7, 352, 535, 1052, 1071
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	1 cut(s)	1092
Cfr10I	RCCGGY	2 cut(s)	323, 350
Cfr13I	GGNCC	3 cut(s)	140, 463, 680
Csp6I	GTAC	2 cut(s)	250, 379
CviAII	CATG	8 cut(s)	99, 253, 374, 476, 937, 1055, 1070, 1093
CviQI	GTAC	2 cut(s)	250, 379
DdeI	CTNAG	2 cut(s)	363, 804
DpnI	GATC	5 cut(s)	44, 437, 977, 999, 1043
DpnII	GATC	5 cut(s)	42, 435, 975, 997, 1041
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	4 cut(s)	104, 136, 486, 1102
Eco24I	GRGCYC	2 cut(s)	448, 907
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	140, 463
Eco57I	CTGAAG	2 cut(s)	420, 1032
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	1142
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	142, 923
EcoT14I	CCWWGG	4 cut(s)	104, 136, 486, 1102
EcoT38I	GRGCYC	2 cut(s)	448, 907
ErhI	CCWWGG	4 cut(s)	104, 136, 486, 1102
FaeI	CATG	8 cut(s)	102, 256, 377, 479, 940, 1058, 1073, 1096
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	8 cut(s)	98, 252, 373, 475, 936, 1054, 1069, 1092
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	453, 524
FokI	GGATG	2 cut(s)	531, 940
FriOI	GRGCYC	2 cut(s)	448, 907
Fsp4HI	GCNGC	2 cut(s)	453, 524
FspBI	CTAG	1 cut(s)	618
FspI	TGCGCA	1 cut(s)	1091
GlaI	GCGC	1 cut(s)	1091
GluI	GCNGC	2 cut(s)	453, 524
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	4 cut(s)	135, 590, 682, 1064
HapII	CCGG	5 cut(s)	164, 324, 351, 382, 461
HhaI	GCGC	1 cut(s)	1092
Hin1II	CATG	8 cut(s)	102, 256, 377, 479, 940, 1058, 1073, 1096
Hin6I	GCGC	1 cut(s)	1090
HinP1I	GCGC	1 cut(s)	1090
HinfI	GANTC	6 cut(s)	277, 395, 740, 954, 1021, 1160
HpaII	CCGG	5 cut(s)	164, 324, 351, 382, 461
HphI	GGTGA	2 cut(s)	118, 1187
Hpy166II	GTNNAC	3 cut(s)	126, 379, 771
Hpy188I	TCNGA	4 cut(s)	400, 659, 736, 745
Hpy188III	TCNNGA	6 cut(s)	46, 220, 572, 602, 979, 1018
Hpy8I	GTNNAC	3 cut(s)	126, 379, 771
HpyAV	CCTTC	3 cut(s)	105, 191, 508
HpyCH4III	ACNGT	4 cut(s)	65, 296, 919, 1133
HpyCH4V	TGCA	4 cut(s)	455, 566, 771, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	416, 452, 650, 937, 1070
HpyF3I	CTNAG	2 cut(s)	363, 804
Hsp92II	CATG	8 cut(s)	102, 256, 377, 479, 940, 1058, 1073, 1096
HspAI	GCGC	1 cut(s)	1090
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	42, 435, 975, 997, 1041
LmnI	GCTCC	3 cut(s)	20, 871, 902
Lsp1109I	GCAGC	2 cut(s)	439, 535
LweI	GCATC	3 cut(s)	336, 918, 1168
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	4 cut(s)	238, 313, 919, 1018
MalI	GATC	5 cut(s)	44, 437, 977, 999, 1043
MboI	GATC	5 cut(s)	42, 435, 975, 997, 1041
MboII	GAAGA	3 cut(s)	220, 413, 589
MflI	RGATCY	1 cut(s)	1041
MhlI	GDGCHC	4 cut(s)	412, 448, 773, 907
MluCI	AATT	3 cut(s)	232, 469, 1107
MlyI	GAGTC	3 cut(s)	749, 1015, 1154
MmeI	TCCRAC	2 cut(s)	372, 1188
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	3 cut(s)	51, 675, 1143
MslI	CAYNNNNRTG	3 cut(s)	548, 897, 1029
MspI	CCGG	5 cut(s)	164, 324, 351, 382, 461
MspR9I	CCNGG	3 cut(s)	144, 461, 925
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	144, 925
MwoI	GCNNNNNNNGC	5 cut(s)	416, 452, 650, 937, 1070
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	5 cut(s)	42, 435, 975, 997, 1041
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	8 cut(s)	102, 256, 377, 479, 940, 1058, 1073, 1096
NlaIV	GGNNCC	3 cut(s)	16, 465, 904
NmeAIII	GCCGAG	1 cut(s)	994
NmuCI	GTSAC	3 cut(s)	313, 919, 1018
NsbI	TGCGCA	1 cut(s)	1091
NspI	RCATGY	3 cut(s)	940, 1073, 1096
OliI	CACNNNNGTG	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	1073
PctI	GAATGC	1 cut(s)	535
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	277, 395, 954
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	454, 525
PleI	GAGTC	3 cut(s)	748, 1015, 1154
PpsI	GAGTC	3 cut(s)	748, 1015, 1154
Psp6I	CCWGG	2 cut(s)	142, 923
PspGI	CCWGG	2 cut(s)	142, 923
PspN4I	GGNNCC	3 cut(s)	16, 465, 904
PspPI	GGNCC	3 cut(s)	140, 463, 680
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	1041
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	2 cut(s)	251, 380
RsaNI	GTAC	2 cut(s)	250, 379
RseI	CAYNNNNRTG	3 cut(s)	548, 897, 1029
SaqAI	TTAA	3 cut(s)	51, 675, 1143
SatI	GCNGC	2 cut(s)	453, 524
Sau3AI	GATC	5 cut(s)	42, 435, 975, 997, 1041
Sau96I	GGNCC	3 cut(s)	140, 463, 680
SchI	GAGTC	3 cut(s)	749, 1015, 1154
ScrFI	CCNGG	3 cut(s)	144, 461, 925
SduI	GDGCHC	4 cut(s)	412, 448, 773, 907
SetI	ASST	8 cut(s)	183, 320, 571, 619, 666, 675, 812, 1083
SfaNI	GCATC	3 cut(s)	336, 918, 1168
SfcI	CTRYAG	2 cut(s)	64, 453
SinI	GGWCC	2 cut(s)	140, 463
SmiMI	CAYNNNNRTG	3 cut(s)	548, 897, 1029
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
SphI	GCATGC	1 cut(s)	1073
Sse9I	AATT	3 cut(s)	232, 469, 1107
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	142, 459, 923
StyI	CCWWGG	4 cut(s)	104, 136, 486, 1102
TaaI	ACNGT	4 cut(s)	65, 296, 919, 1133
TaqI	TCGA	5 cut(s)	174, 228, 702, 791, 882
TasI	AATT	3 cut(s)	232, 469, 1107
TfiI	GAWTC	3 cut(s)	277, 395, 954
Tru1I	TTAA	3 cut(s)	51, 675, 1143
Tru9I	TTAA	3 cut(s)	51, 675, 1143
TscAI	CASTG	5 cut(s)	68, 199, 550, 922, 1138
TseFI	GTSAC	3 cut(s)	313, 919, 1018
TseI	GCWGC	2 cut(s)	452, 523
Tsp45I	GTSAC	3 cut(s)	313, 919, 1018
TspDTI	ATGAA	3 cut(s)	87, 464, 626
TspRI	CASTG	5 cut(s)	68, 199, 550, 922, 1138
Tth111I	GACNNNGTC	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	140, 463
XagI	CCTNNNNNAGG	1 cut(s)	1142
XapI	RAATTY	1 cut(s)	1107
XceI	RCATGY	3 cut(s)	940, 1073, 1096
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.