Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387405.1

Orthogroup ID

OG0008869

Physical Location & Seq

Genomic Coordinates Reverse (-)

285 .. 1159

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387405.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggataactcggaagactattcaggtgactcagaagatgatgatgatgctataaagaagtccaacaaaatgatggaatattttaactgccctcctgatggctatgttggcagcaaacacgtcattgaggacgatccagaaaaccccaaagatttggaacgagtcttcgacataatgtgcaagacagaacccctcatccacactttcaccaggatggtgaacatgctaaaaaaagatggatttctgtcccaagcccaggagataagggctgagtttgacttgggagtatatatacctgaagtcgtgacccacaccggcgtcattgagatctatgccaagagtgatcaagccaaggaggctcacaaggttttcctgcgcatgttatccctcggagttgctccaaatgcatacacttatagtgttatcattaaggcacttgctaaagactccaacttccttgaagatgctaagaagtacttgctggaaatgatggataagggaatgcagcctaatgccaggacatacacccctgtgtttaaagcctttgctcggctggaggaggataatgtgaagaaagggaaggagtttctgatggagatgaaagccaagggattcagggctaaaaagaaggctgtgatggaggttgtcaagggaagaaaaggaccagtggttgaaaccgttatcagtattctcttcggcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

234

Amino Acids

26.59

Weight (kDa)

5.91

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08910 FvH4_6g08910 FvH4_6g08910
rosa_chinensis	RchiOBHm_Chr3g0459171 RchiOBHm_Chr3g0459201
rosa_laevigata	RLG00000025104 RLG00000025106
rosa_multiflora	Rmu_co8387405.1_g000001 Rmu_sc0002435.1_g000014 Rmu_sc0002435.1_g000016 Rmu_sc0014208.1_g000003 Rmu_sc0014208.1_g000008
rosa_roxburghii	Rroxscaffold_6G00420420 Rroxscaffold_6G00420450
rosa_rugosa	Rorug03G0034000 Rorug03G0034100 Rorug03G0034200
rosa_samantha	Rh3AG092200 Rh3CG095900 Rh3CG096100 Rh3DG095900
rosa_wichuraiana	Rw3G007890 Rw3G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	3 cut(s)	98, 256, 549
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	461, 674
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	209, 255, 515
AleI	CACNNNNGTG	1 cut(s)	530
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	111, 505
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	38, 199, 229
AvaII	GGWCC	1 cut(s)	662
BbsI	GAAGAC	2 cut(s)	21, 157
BbvI	GCAGC	2 cut(s)	123, 517
BccI	CCATC	7 cut(s)	67, 92, 208, 230, 484, 586, 631
BciT130I	CCWGG	3 cut(s)	211, 257, 517
BclI	TGATCA	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	2 cut(s)	112, 506
BlsI	GCNGC	2 cut(s)	113, 507
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	3 cut(s)	211, 257, 517
Bme18I	GGWCC	1 cut(s)	662
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	662
BmrFI	CCNGG	3 cut(s)	211, 257, 517
BmsI	GCATC	2 cut(s)	37, 454
BpiI	GAAGAC	2 cut(s)	21, 157
BpmI	CTGGAG	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	4 cut(s)	255, 351, 388, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 256, 549
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	665
BseBI	CCWGG	3 cut(s)	211, 257, 517
BseDI	CCNNGG	4 cut(s)	255, 351, 388, 606
BseGI	GGATG	2 cut(s)	195, 219
BseLI	CCNNNNNNNGG	3 cut(s)	98, 256, 549
BseMII	CTCAG	2 cut(s)	45, 261
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	123, 517
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	3 cut(s)	98, 256, 549
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	133, 327, 343
BspCNI	CTCAG	2 cut(s)	44, 262
BspPI	GGATC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	255, 351, 388, 606
BssMI	GATC	3 cut(s)	133, 327, 343
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	351, 606
Bst2UI	CCWGG	3 cut(s)	211, 257, 517
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	698
BstACI	GRCGYC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	31, 270, 468
BstF5I	GGATG	2 cut(s)	195, 219
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	136, 330, 346
BstMBI	GATC	3 cut(s)	133, 327, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 356, 404
BstNI	CCWGG	3 cut(s)	211, 257, 517
BstNSI	RCATGY	2 cut(s)	226, 382
BstSCI	CCNGG	3 cut(s)	209, 255, 515
BstV1I	GCAGC	2 cut(s)	123, 517
BstV2I	GAAGAC	2 cut(s)	21, 157
BstX2I	RGATCY	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	195, 219
BtsIMutI	CAGTG	1 cut(s)	672
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	662
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	223, 379
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	31, 270, 468
DpnI	GATC	3 cut(s)	135, 329, 345
DpnII	GATC	3 cut(s)	133, 327, 343
DraI	TTTAAA	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	2 cut(s)	351, 606
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	318
EcoRII	CCWGG	3 cut(s)	209, 255, 515
EcoT14I	CCWWGG	2 cut(s)	351, 606
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	351, 606
FaeI	CATG	2 cut(s)	226, 382
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	222, 378
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	112, 506
FokI	GGATG	2 cut(s)	182, 226
Fsp4HI	GCNGC	2 cut(s)	112, 506
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	112, 506
GsuI	CTGGAG	1 cut(s)	575
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	226, 382
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	4 cut(s)	29, 162, 446, 612
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	38, 199, 229
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	13, 34, 392, 591
Hpy188III	TCNNGA	3 cut(s)	95, 137, 304
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	574, 622
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	180, 407, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 356, 404
HpyF3I	CTNAG	3 cut(s)	31, 270, 468
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	226, 382
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	133, 327, 343
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	123, 517
LweI	GCATC	2 cut(s)	37, 454
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	26, 304
MalI	GATC	3 cut(s)	135, 329, 345
MboI	GATC	3 cut(s)	133, 327, 343
MboII	GAAGA	7 cut(s)	26, 47, 157, 473, 583, 666, 685
MflI	RGATCY	1 cut(s)	327
MlyI	GAGTC	3 cut(s)	23, 171, 440
MmeI	TCCRAC	2 cut(s)	87, 474
MnlI	CCTC	8 cut(s)	102, 121, 203, 349, 398, 550, 553, 634
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	3 cut(s)	84, 429, 537
MslI	CAYNNNNRTG	2 cut(s)	212, 530
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	211, 257, 517
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	3 cut(s)	211, 257, 517
MwoI	GCNNNNNNNGC	3 cut(s)	108, 356, 404
NdeII	GATC	3 cut(s)	133, 327, 343
NlaIII	CATG	2 cut(s)	226, 382
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	2 cut(s)	26, 304
NsbI	TGCGCA	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	2 cut(s)	226, 382
OliI	CACNNNNGTG	1 cut(s)	530
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	612
PkrI	GCNGC	2 cut(s)	113, 507
PleI	GAGTC	3 cut(s)	23, 170, 440
PpsI	GAGTC	3 cut(s)	23, 170, 440
Psp6I	CCWGG	3 cut(s)	209, 255, 515
PspGI	CCWGG	3 cut(s)	209, 255, 515
PspPI	GGNCC	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	212, 530
SaqAI	TTAA	3 cut(s)	84, 429, 537
SatI	GCNGC	2 cut(s)	112, 506
Sau3AI	GATC	3 cut(s)	133, 327, 343
Sau96I	GGNCC	1 cut(s)	662
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	3 cut(s)	23, 171, 440
ScrFI	CCNGG	3 cut(s)	211, 257, 517
SetI	ASST	5 cut(s)	28, 123, 298, 369, 645
SfaNI	GCATC	2 cut(s)	37, 454
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	212, 530
SspI	AATATT	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	209, 255, 515
StyI	CCWWGG	2 cut(s)	351, 606
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	168
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	3 cut(s)	84, 429, 537
Tru9I	TTAA	3 cut(s)	84, 429, 537
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	2 cut(s)	26, 304
TseI	GCWGC	2 cut(s)	111, 505
Tsp45I	GTSAC	2 cut(s)	26, 304
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	672
VpaK11BI	GGWCC	1 cut(s)	662
XceI	RCATGY	2 cut(s)	226, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
ZrmI	AGTACT	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.