Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004096

Physical Location & Seq

Genomic Coordinates Reverse (-)

3834818 .. 3836458

Gene Structure 1641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGTACTTTTCAATTTTAATGAAATGGGAGTACTTTTCAATTTTAATGATTCACAGAGGCTAATTCACCAAATTCTGTCTCAGCATGAAATATTCAATGCAGTAGGTTACAGGAGCAGATTACCTTACTGGCAGAATAGCTCTTCATTTTACTGCTGTAATGGACATGGTGCTGCTGCTTTAATACCGGGAGTTCGGGACCAATGCAGAATTTACCCAGCAGTGGCTATTCAAGCCCCATCTATCCTCACATCAGACACTGCAGCTGCAGCAGCGGTCACTCAGAGCTTGCTTCAACAAACCAATCCGCAGAACTCCCAAGGAAACTGGGCCTTGCAGCAACAGATGATCGAGCAACTGCTGCAGGAGATGTCTAATAATAACACGGCTGCTAATGCTACTCCAACTGTGTCTGGAAGTTACGGCCCTGCTCCAAGTAGGAATAGCGACTTTTCAGCAGGTGGTGGTAACATTGCGTTCAATCAGAGAGCACAAGATTTACCCTCAATTCTTCATTTGCAAGAGTATATGGTTCAAGACATTGCCCGTGATTTCACAGAAAACGGCTTTTTAAGAATGATCTTGATGATAATATTCCTAAGGTGGCTAGGAAAGATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

209

Amino Acids

23.05

Weight (kDa)

6.03

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62090 AT5G62090 AT5G62090
fragaria_vesca	FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060
malus_domestica	MD01G1197300.v1.1 MD07G1264600.v1.1
prunus_persica	Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1
pyrus_communis	pycom01g20770 pycom07g24320
rosa_chinensis	RchiOBHm_Chr1g0376781
rosa_laevigata	RLG00000026560 RLG00000026570 RLG00000026571
rosa_multiflora	Rmu_sc0002113.1_g000009
rosa_roxburghii	Rroxscaffold_4G00281740
rosa_rugosa	Rorug01G0398100 Rorug01G0398200.1 Rorug01G0398300 Rorug01G0398300
rosa_samantha	Rh1AG415500 Rh1BG375000 Rh1CG388800 Rh1DG405600
rosa_wichuraiana	Rw1G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	452
AciI	CCGC	2 cut(s)	278, 311
AcsI	RAATTY	2 cut(s)	75, 213
AfaI	GTAC	2 cut(s)	9, 36
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	16, 43, 100, 236, 299, 484, 539
AluBI	AGCT	3 cut(s)	144, 269, 291
AluI	AGCT	3 cut(s)	144, 269, 291
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	333, 427
ApeKI	GCWGC	9 cut(s)	176, 179, 266, 269, 272, 275, 340, 364, 392
ApoI	RAATTY	2 cut(s)	75, 213
AspS9I	GGNCC	3 cut(s)	202, 333, 428
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	9 cut(s)	163, 166, 256, 278, 284, 287, 351, 352, 379
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	3 cut(s)	405, 442, 583
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	3 cut(s)	264, 270, 365
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	9 cut(s)	177, 180, 267, 270, 273, 276, 341, 365, 393
BlsI	GCNGC	9 cut(s)	178, 181, 268, 271, 274, 277, 342, 366, 394
BmcAI	AGTACT	2 cut(s)	9, 36
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	202, 333, 428
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	137, 335
Bse21I	CCTNAGG	1 cut(s)	602
Bse3DI	GCAATG	2 cut(s)	474, 543
BseDI	CCNNGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	2 cut(s)	474, 543
BseMII	CTCAG	2 cut(s)	98, 299
BseNI	ACTGG	2 cut(s)	137, 335
BseXI	GCAGC	9 cut(s)	163, 166, 256, 278, 284, 287, 351, 352, 379
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	335, 429
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	335, 429
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	351, 582, 618
BspACI	CCGC	2 cut(s)	278, 311
BspANI	GGCC	2 cut(s)	335, 429
BspCNI	CTCAG	2 cut(s)	97, 298
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	3 cut(s)	268, 274, 369
BspMI	ACCTGC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	474, 543
BsrI	ACTGG	2 cut(s)	137, 335
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	351, 582, 618
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	3 cut(s)	84, 285, 602
BstKTI	GATC	3 cut(s)	354, 585, 621
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	3 cut(s)	351, 582, 618
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 272, 275, 364, 398
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	3 cut(s)	264, 270, 365
BstV1I	GCAGC	9 cut(s)	163, 166, 256, 278, 284, 287, 351, 352, 379
Bsu36I	CCTNAGG	1 cut(s)	602
BsuRI	GGCC	2 cut(s)	335, 429
BtsI	GCAGTG	2 cut(s)	231, 261
BtsIMutI	CAGTG	2 cut(s)	231, 261
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	202, 333, 428
Csp6I	GTAC	2 cut(s)	8, 35
CviAII	CATG	2 cut(s)	89, 170
CviQI	GTAC	2 cut(s)	8, 35
DdeI	CTNAG	3 cut(s)	84, 285, 602
DpnI	GATC	3 cut(s)	353, 584, 620
DpnII	GATC	3 cut(s)	351, 582, 618
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	92, 173
FaiI	YATR	4 cut(s)	90, 171, 531, 533
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	88, 169
Fnu4HI	GCNGC	9 cut(s)	177, 180, 267, 270, 273, 276, 341, 365, 393
Fsp4HI	GCNGC	9 cut(s)	177, 180, 267, 270, 273, 276, 341, 365, 393
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	9 cut(s)	177, 180, 267, 270, 273, 276, 341, 365, 393
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	335, 429
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	92, 173
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	3 cut(s)	259, 288, 489
Hpy188III	TCNNGA	4 cut(s)	200, 417, 539, 586
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	7 cut(s)	104, 210, 266, 272, 340, 367, 523
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 272, 275, 364, 398
HpyF3I	CTNAG	3 cut(s)	84, 285, 602
Hsp92II	CATG	2 cut(s)	92, 173
Kzo9I	GATC	3 cut(s)	351, 582, 618
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	117, 439
LpnPI	CCDG	9 cut(s)	100, 118, 204, 234, 316, 353, 402, 444, 447
Lsp1109I	GCAGC	9 cut(s)	163, 166, 256, 278, 284, 287, 351, 352, 379
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	4 cut(s)	110, 280, 422, 470
MalI	GATC	3 cut(s)	353, 584, 620
MboI	GATC	3 cut(s)	351, 582, 618
MboII	GAAGA	2 cut(s)	138, 506
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	6 cut(s)	16, 43, 66, 75, 213, 510
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	3 cut(s)	54, 260, 517
MseI	TTAA	4 cut(s)	21, 48, 185, 575
MspA1I	CMGCKG	2 cut(s)	269, 278
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	236, 272, 275, 364, 398
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	351, 582, 618
NlaIII	CATG	2 cut(s)	92, 173
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	9 cut(s)	178, 181, 268, 271, 274, 277, 342, 366, 394
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	3 cut(s)	202, 333, 428
PstI	CTGCAG	3 cut(s)	268, 274, 369
PstNI	CAGNNNCTG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	9, 36
RsaNI	GTAC	2 cut(s)	8, 35
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	21, 48, 185, 575
SatI	GCNGC	9 cut(s)	177, 180, 267, 270, 273, 276, 341, 365, 393
Sau3AI	GATC	3 cut(s)	351, 582, 618
Sau96I	GGNCC	3 cut(s)	202, 333, 428
ScaI	AGTACT	2 cut(s)	9, 36
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	7 cut(s)	112, 130, 146, 271, 293, 466, 608
SfcI	CTRYAG	3 cut(s)	264, 270, 365
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	6 cut(s)	16, 43, 66, 75, 213, 510
SsiI	CCGC	2 cut(s)	278, 311
SspI	AATATT	2 cut(s)	96, 597
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	354
TasI	AATT	6 cut(s)	16, 43, 66, 75, 213, 510
TatI	WGTACW	2 cut(s)	7, 34
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	4 cut(s)	21, 48, 185, 575
Tru9I	TTAA	4 cut(s)	21, 48, 185, 575
TscAI	CASTG	2 cut(s)	231, 268
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	9 cut(s)	176, 179, 266, 269, 272, 275, 340, 364, 392
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	39, 105, 138, 506
TspRI	CASTG	2 cut(s)	231, 268
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	2 cut(s)	75, 213
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	2 cut(s)	9, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.