Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004096

Physical Location & Seq

Genomic Coordinates Reverse (-)

3910650 .. 3919922

Gene Structure 9273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2901 bp

ATGAGTGAACAAATGGCTTTTCTTGTTCGCAAGTGGAATTCCTTAATCAAAGAGGAGGAGGATACTGCACTGGTCAAGAGCACCGGTGCTCTAAGTGATGATCTTGCCATCTTGTATGAGATTTTGGACCGTGTGATTCAACGGTGGGACGACATTTCCCCCGTGGCAAAGCTCTCCCGAGTTCTGAGATCCCCAATGAGTGGTGATATTATTGATGGGCTGAAGTGGGGGTTCTTGTTTGTTCTAGTATCGTGGGGATGCCTGGCTCTGGAGAGCTACTTAGAATCTGGCCACCAAAGGGCGGGGCCTCCTATGGTGCCTTCACGGGTGGCTGGAGGATTAACGCAATCTTCATCGAGTTCTGGAATTTTCTTCCAAGGGGATGGGCAGTCTCAGTCTGTAGTTAACTCTCACTTGAGCTCATCTTTCGGGAACTCTTCTAATTCAATTCCTGGAACTGGGCGTTCAAATTTGGGTCCGGTTTCTGGGGACATGAACAATGCAGTTTTAAGCAGTGTGGCAAATTCAGGTCCAAGTGTTGGGGCAAGTTCTTTGGTCACAGATGCAAACTCTGTACTTTCAGGTGGTCCCCATTTGCAGAGAAGTGCAAGCATCAATAACGAGTCCTACTTACGCTTACCAGCTTCCCCTATGTCATTCTCGTCGAACAATATTAGCATGTCTGGATCATCAATTATGGATGGCTCTTCTGTAGTGCAACAGAATTCTCAGCATGACCAGAATTCCCAACAAATTCAGCAGGGTCAGCAGCACCAGCACCCCCGGCAGCAGGGGACTTCTAGTGCTACATCCTTGCCCACGTCCCAAACTGGCCAAGTTTCCCTTCCCATGGGAGCACGTGTTCCTGGAACTTTTATTCAAGATCCAAATAATTTAGCCCACGTCCAGAAGAAACCACGGTTGGATATCAAGCAGGAAGAAATGATGCAGCAGCAGGTGTTCCAGCAACTACTGCAAAGACAAGATTCCATGCAGTTCCAAGGACGGAATCCACAGTTACAAGCCTTGATTCAACAGCAGAGACTACGGCAACAGCAACAAATTTTGCAGTCCATGCCTCAATTGCAGAGAGCACATATTCAGCAACAGCAGCAGCAGCAACAGCAGCTGCAGTTGAGACAGCAACTTCAACAACAAGCTTTGCAGCCAGCATCTTCCATTAATAAGCGTCCATATGATGGTGGCGTTTGTGCTCGTAGGCTGATGCAATATCTGTATCATCAGCGGCAACGACCAGCTGACAATAGTATTGCGTATTGGAGGAAGTTTGTGACAGAGTATTACTCTCCTCGTGCTAAGAAAAGATGGTGCTTGTCGTTATATGACAATGTTGGGCATCATGCGCTTGGTGTTTTCCCCCAGGCTTCTATGGATGCATGGCAGTGTGACATTTGTGGTTCTAAATCAGGAAGAGGTTTCGAGGCGACCTTTGAAGTACTCCCTAGACTTAATGAGATCAAATTTGGCAGTGGAGTCATCGATGAGCTTTTGTTTCTAGACTTGCCAAGAGAATGTAGATTTCCTTCTGGTGTAATGATGCTGGAATATGGAAAAGCAGTTCAAGAGAGTGTATACGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTATCGTGTTTACACAAGATTTAAAGATATTGTCTTGGGAATTTTGTGCACGACGCCATGAAGAGCTTCTTCCTCGTAGGCTTGTTGCTCCACAGGTCAATCAGTTGGTTCAGGTTGCGCAGAAGTGCCAGAGTACGATTGCTGAAAGTGGATCTGATGGGGTTTCTCAGCAGGATCTACAAGCAAATAGCAATTTGGTTCTGACAGCTGGGCGGCAGCTTGCAAAGAGTTTGGAGTTGCAGTCACTGAATGACTTGGGCTTTTCTAAAAGATATGTGAGGTGTTTGCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCGATTTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCGAATGCAACCAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGTTAGCAAATGTTCAGGGCATGCCAACTGACAGGAACACTCTGAATAAGCTAATGGCATTGCATCCCGGACTAAACAATCAAATGAATAACAACCAGCACATGGCCAGTCGAGGAGCTTTGAGTGGCTCAGCACAAGCAGCTTTAGCGCTGACCAATTACCAGAATCTGCTCATGAGGCAGAACTCAATGAATTCAAATGCAAATTCTCTTCAACAGGAGGCATCTTCGTCTTTCAATAACTCCAACCAAAGTCCATCGTCACCTTTTCAAGGTGCTGCTGCTTTAATACCGGGACCAATGCAGAATTTACCCGGCAGTGGCTATTCAAGTCCCCATCTATCCTCACGACAGCCACATCAGACACCGCAGCTGCAGCAGCGGTCACTCAGTTCTAACAGCTTGCTTCAACAAACCAATCCGCAGAACTCCCAAGGCAACCAGGCCTTGCAGCAACAGATGATCCAGCAACTGCTGCAGGAGATGTCTAATAATAACAGTGGGGGACAACAATCACTTCCCGGACCAAATTCTAATGGGAGTTTGACAAGGAATGGGTTGAGTTTTGGAGGTAATAATTCAGTGGCCGCTAATGCTACTCCAACTGTGTCTGGAAGTCACGGCCCTGCTCCAAGCAGGAGTAACAGTTTCAAAGCTGCTGCAAACAGCGACTCTTCAGCAGGTGGTGGTAACAATGCATTCAATCAGAGAGCACAAGAATTACCCTCAAACCTTCATTTGCAAGAGGATATGGTTCAAGACATTGCCCGTGAATTCACAGAAAATGGCTTTTTTAACAATGATCTTGATGATAATATGGGTTACGGCTGGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

967

Amino Acids

106.31

Weight (kDa)

8.76

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	407 - 667	2.3e-65	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62090 AT5G62090 AT5G62090
fragaria_vesca	FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060
malus_domestica	MD01G1197300.v1.1 MD07G1264600.v1.1
prunus_persica	Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1
pyrus_communis	pycom01g20770 pycom07g24320
rosa_chinensis	RchiOBHm_Chr1g0376781
rosa_laevigata	RLG00000026560 RLG00000026570 RLG00000026571
rosa_multiflora	Rmu_sc0002113.1_g000009
rosa_roxburghii	Rroxscaffold_4G00281740
rosa_rugosa	Rorug01G0398100 Rorug01G0398200.1 Rorug01G0398300 Rorug01G0398300
rosa_samantha	Rh1AG415500 Rh1BG375000 Rh1CG388800 Rh1DG405600
rosa_wichuraiana	Rw1G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	946, 2732
Acc16I	TGCGCA	1 cut(s)	1749
Acc36I	ACCTGC	2 cut(s)	946, 2732
AccB1I	GGYRCC	1 cut(s)	316
AccB7I	CCANNNNNTGG	4 cut(s)	200, 539, 1199, 2164
AccI	GTMKAC	1 cut(s)	1593
AciI	CCGC	7 cut(s)	302, 1246, 1843, 2429, 2443, 2483, 2649
AclWI	GGATC	6 cut(s)	183, 694, 878, 1789, 1812, 2518
AcoI	YGGCCR	4 cut(s)	289, 832, 2166, 2646
AcuI	CTGAAG	2 cut(s)	242, 2721
AcvI	CACGTG	1 cut(s)	860
AcyI	GRCGYC	1 cut(s)	1684
AfaI	GTAC	3 cut(s)	576, 1458, 1765
AfeI	AGCGCT	1 cut(s)	2211
AflIII	ACRYGT	1 cut(s)	859
AgeI	ACCGGT	1 cut(s)	83
AjiI	CACGTC	2 cut(s)	822, 904
AjnI	CCWGG	5 cut(s)	261, 451, 865, 1380, 2502
AjuI	GAANNNNNNNTTGG	6 cut(s)	828, 860, 905, 937, 1962, 1994
AloI	GAACNNNNNNTCC	4 cut(s)	846, 878, 1563, 1595
Alw21I	GWGCWC	8 cut(s)	83, 91, 422, 859, 1096, 1216, 1681, 2776
Alw26I	GTCTC	3 cut(s)	396, 1036, 1132
Alw44I	GTGCAC	1 cut(s)	1677
AlwI	GGATC	6 cut(s)	183, 694, 878, 1789, 1812, 2518
AlwNI	CAGNNNCTG	4 cut(s)	1129, 1876, 2230, 2533
Ama87I	CYCGRG	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	2211
AoxI	GGCC	8 cut(s)	289, 305, 832, 1981, 2166, 2505, 2646, 2683
ApaLI	GTGCAC	1 cut(s)	1677
AseI	ATTAAT	1 cut(s)	1182
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	1695
AspLEI	GCGC	3 cut(s)	1366, 1750, 2212
AspS9I	GGNCC	9 cut(s)	127, 305, 476, 530, 587, 1982, 2357, 2585, 2684
AsuC2I	CCSGG	6 cut(s)	784, 1967, 2130, 2355, 2376, 2583
AsuHPI	GGTGA	2 cut(s)	215, 2316
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	6 cut(s)	127, 476, 530, 587, 2357, 2585
BaeGI	GKGCMC	1 cut(s)	1681
BalI	TGGCCA	3 cut(s)	291, 834, 2168
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	422
BarI	GAAGNNNNNNTAC	2 cut(s)	1528, 1560
BauI	CACGAG	1 cut(s)	1311
BbrPI	CACGTG	1 cut(s)	860
Bbv12I	GWGCWC	8 cut(s)	83, 91, 422, 859, 1096, 1216, 1681, 2776
BccI	CCATC	9 cut(s)	116, 209, 377, 695, 1193, 1320, 1781, 2326, 2406
BceAI	ACGGC	2 cut(s)	1064, 2698
BciT130I	CCWGG	5 cut(s)	263, 453, 867, 1382, 2504
BciVI	GTATCC	1 cut(s)	55
BcnI	CCSGG	6 cut(s)	784, 1967, 2130, 2355, 2376, 2583
BcoDI	GTCTC	3 cut(s)	396, 1036, 1132
BfaI	CTAG	4 cut(s)	245, 801, 1464, 1517
BfmI	CTRYAG	5 cut(s)	399, 711, 1130, 2435, 2537
BfoI	RGCGCY	1 cut(s)	2213
BfuAI	ACCTGC	2 cut(s)	946, 2732
BfuI	GTATCC	1 cut(s)	55
BlpI	GCTNAGC	1 cut(s)	2191
BmcAI	AGTACT	1 cut(s)	1458
Bme18I	GGWCC	6 cut(s)	127, 476, 530, 587, 2357, 2585
BmeT110I	CYCGRG	1 cut(s)	177
BmgBI	CACGTC	2 cut(s)	822, 904
BmgT120I	GGNCC	9 cut(s)	127, 305, 476, 530, 587, 1982, 2357, 2585, 2684
BmiI	GGNNCC	5 cut(s)	306, 318, 477, 589, 2358
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	1289, 1321
BpmI	CTGGAG	3 cut(s)	290, 354, 2018
Bpu1102I	GCTNAGC	1 cut(s)	2191
BpuEI	CTTGAG	1 cut(s)	436
BpuMI	CCSGG	6 cut(s)	784, 1967, 2130, 2355, 2376, 2583
Bsa29I	ATCGAT	2 cut(s)	1500, 1956
BsaAI	YACGTR	1 cut(s)	860
BsaHI	GRCGYC	1 cut(s)	1684
BsaJI	CCNNGG	8 cut(s)	162, 376, 782, 849, 917, 1000, 1380, 2494
BsaWI	WCCGGW	2 cut(s)	83, 478
BsaXI	ACNNNNNCTCC	6 cut(s)	846, 876, 1856, 1886, 2692, 2722
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	75, 463, 835, 2169
Bse3DI	GCAATG	2 cut(s)	2120, 2823
BseBI	CCWGG	5 cut(s)	263, 453, 867, 1382, 2504
BseCI	ATCGAT	2 cut(s)	1500, 1956
BseDI	CCNNGG	8 cut(s)	162, 376, 782, 849, 917, 1000, 1380, 2494
BseGI	GGATG	6 cut(s)	263, 388, 706, 809, 1399, 2125
BseMI	GCAATG	2 cut(s)	2120, 2823
BseMII	CTCAG	6 cut(s)	176, 407, 743, 1811, 2205, 2464
BseNI	ACTGG	4 cut(s)	75, 463, 835, 2169
BseRI	GAGGAG	4 cut(s)	68, 71, 1299, 2190
BseSI	GKGCMC	1 cut(s)	1681
BseYI	CCCAGC	1 cut(s)	1838
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	8 cut(s)	291, 307, 834, 1983, 2168, 2507, 2648, 2685
BshNI	GGYRCC	1 cut(s)	316
BshTI	ACCGGT	1 cut(s)	83
BshVI	ATCGAT	2 cut(s)	1500, 1956
BsiHKAI	GWGCWC	8 cut(s)	83, 91, 422, 859, 1096, 1216, 1681, 2776
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	8 cut(s)	84, 479, 784, 1966, 2130, 2354, 2376, 2583
BslFI	GGGAC	8 cut(s)	161, 503, 573, 808, 808, 2370, 2379, 2580
BsmAI	GTCTC	3 cut(s)	396, 1036, 1132
BsmFI	GGGAC	8 cut(s)	161, 503, 573, 808, 808, 2370, 2379, 2580
BsmI	GAATGC	2 cut(s)	2026, 2759
BsnI	GGCC	8 cut(s)	291, 307, 834, 1983, 2168, 2507, 2648, 2685
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	8 cut(s)	83, 91, 422, 859, 1096, 1216, 1681, 2776
Bsp1720I	GCTNAGC	1 cut(s)	2191
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	7 cut(s)	302, 1246, 1843, 2429, 2443, 2483, 2649
BspANI	GGCC	8 cut(s)	291, 307, 834, 1983, 2168, 2507, 2648, 2685
BspCNI	CTCAG	6 cut(s)	177, 406, 742, 1810, 2204, 2463
BspDI	ATCGAT	2 cut(s)	1500, 1956
BspHI	TCATGA	1 cut(s)	2235
BspLI	GGNNCC	5 cut(s)	306, 318, 477, 589, 2358
BspMAI	CTGCAG	3 cut(s)	1134, 2439, 2541
BspMI	ACCTGC	2 cut(s)	946, 2732
BspPI	GGATC	6 cut(s)	183, 694, 878, 1789, 1812, 2518
BspQI	GCTCTTC	2 cut(s)	712, 1686
BspT107I	GGYRCC	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	2120, 2823
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	4 cut(s)	75, 463, 835, 2169
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	8 cut(s)	162, 376, 782, 849, 917, 1000, 1380, 2494
BssNAI	GTATAC	1 cut(s)	1594
BssNI	GRCGYC	1 cut(s)	1684
BssSI	CACGAG	1 cut(s)	1311
BssT1I	CCWWGG	4 cut(s)	376, 849, 1000, 2494
Bst1107I	GTATAC	1 cut(s)	1594
Bst2BI	CACGAG	1 cut(s)	1311
Bst2UI	CCWGG	5 cut(s)	263, 453, 867, 1382, 2504
Bst4CI	ACNGT	7 cut(s)	131, 144, 921, 1017, 2561, 2668, 2708
Bst6I	CTCTTC	6 cut(s)	442, 712, 1426, 1686, 2277, 2740
BstACI	GRCGYC	1 cut(s)	1684
BstAPI	GCANNNNNTGC	4 cut(s)	973, 1075, 2047, 2536
BstBAI	YACGTR	1 cut(s)	860
BstC8I	GCNNGC	5 cut(s)	610, 1170, 1851, 2084, 2465
BstDEI	CTNAG	9 cut(s)	92, 185, 280, 393, 729, 1317, 1797, 2191, 2450
BstDSI	CCRYGG	3 cut(s)	162, 849, 917
BstENI	CCTNNNNNAGG	1 cut(s)	2331
BstF5I	GGATG	6 cut(s)	263, 388, 706, 809, 1399, 2125
BstH2I	RGCGCY	1 cut(s)	2213
BstHHI	GCGC	3 cut(s)	1366, 1750, 2212
BstMAI	GTCTC	3 cut(s)	396, 1036, 1132
BstNI	CCWGG	5 cut(s)	263, 453, 867, 1382, 2504
BstNSI	RCATGY	3 cut(s)	682, 2018, 2086
BstSFI	CTRYAG	5 cut(s)	399, 711, 1130, 2435, 2537
BstSLI	GKGCMC	1 cut(s)	1681
BstX2I	RGATCY	4 cut(s)	188, 883, 1781, 1804
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	4 cut(s)	188, 883, 1781, 1804
BstZ17I	GTATAC	1 cut(s)	1594
Bsu15I	ATCGAT	2 cut(s)	1500, 1956
BsuI	GTATCC	1 cut(s)	55
BsuRI	GGCC	8 cut(s)	291, 307, 834, 1983, 2168, 2507, 2648, 2685
BsuTUI	ATCGAT	2 cut(s)	1500, 1956
BtgI	CCRYGG	3 cut(s)	162, 849, 917
BtrI	CACGTC	2 cut(s)	822, 904
BtsCI	GGATG	6 cut(s)	263, 388, 706, 809, 1399, 2125
BtsI	GCAGTG	4 cut(s)	520, 1409, 1495, 2386
BtsIMutI	CAGTG	8 cut(s)	68, 520, 1409, 1495, 1874, 2386, 2566, 2649
BveI	ACCTGC	2 cut(s)	946, 2732
Cac8I	GCNNGC	5 cut(s)	610, 1170, 1851, 2084, 2465
CaiI	CAGNNNCTG	4 cut(s)	1129, 1876, 2230, 2533
CciI	TCATGA	1 cut(s)	2235
CfoI	GCGC	3 cut(s)	1366, 1750, 2212
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	9 cut(s)	127, 305, 476, 530, 587, 1982, 2357, 2585, 2684
ClaI	ATCGAT	2 cut(s)	1500, 1956
CseI	GACGC	2 cut(s)	1178, 1692
Csp6I	GTAC	3 cut(s)	575, 1457, 1764
CspAI	ACCGGT	1 cut(s)	83
CviQI	GTAC	3 cut(s)	575, 1457, 1764
DdeI	CTNAG	9 cut(s)	92, 185, 280, 393, 729, 1317, 1797, 2191, 2450
DraI	TTTAAA	1 cut(s)	1653
EaeI	YGGCCR	4 cut(s)	289, 832, 2166, 2646
Eam1104I	CTCTTC	6 cut(s)	442, 712, 1426, 1686, 2277, 2740
EarI	CTCTTC	6 cut(s)	442, 712, 1426, 1686, 2277, 2740
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	4 cut(s)	376, 849, 1000, 2494
Eco147I	AGGCCT	1 cut(s)	2507
Eco24I	GRGCYC	1 cut(s)	422
Eco32I	GATATC	2 cut(s)	928, 1923
Eco47I	GGWCC	6 cut(s)	127, 476, 530, 587, 2357, 2585
Eco47III	AGCGCT	1 cut(s)	2211
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	2 cut(s)	242, 2721
Eco72I	CACGTG	1 cut(s)	860
Eco88I	CYCGRG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	2331
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRI	GAATTC	5 cut(s)	37, 724, 742, 2254, 2834
EcoRII	CCWGG	5 cut(s)	261, 451, 865, 1380, 2502
EcoRV	GATATC	2 cut(s)	928, 1923
EcoT14I	CCWWGG	4 cut(s)	376, 849, 1000, 2494
EcoT22I	ATGCAT	2 cut(s)	1399, 2761
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	4 cut(s)	376, 849, 1000, 2494
FalI	AAGNNNNNCTT	4 cut(s)	828, 860, 1683, 1715
FaqI	GGGAC	8 cut(s)	161, 503, 573, 808, 808, 2370, 2379, 2580
FauI	CCCGC	1 cut(s)	295
FauNDI	CATATG	1 cut(s)	1195
FblI	GTMKAC	1 cut(s)	1593
FokI	GGATG	6 cut(s)	270, 395, 713, 796, 1406, 2112
FriOI	GRGCYC	1 cut(s)	422
FspBI	CTAG	4 cut(s)	245, 801, 1464, 1517
FspI	TGCGCA	1 cut(s)	1749
GlaI	GCGC	3 cut(s)	1365, 1749, 2211
GsaI	CCCAGC	1 cut(s)	1842
GsuI	CTGGAG	3 cut(s)	290, 354, 2018
HaeII	RGCGCY	1 cut(s)	2213
HaeIII	GGCC	8 cut(s)	291, 307, 834, 1983, 2168, 2507, 2648, 2685
HapII	CCGG	8 cut(s)	84, 479, 784, 1966, 2130, 2354, 2376, 2583
HgaI	GACGC	2 cut(s)	1178, 1692
HhaI	GCGC	3 cut(s)	1366, 1750, 2212
Hin1I	GRCGYC	1 cut(s)	1684
Hin6I	GCGC	3 cut(s)	1364, 1748, 2210
HinP1I	GCGC	3 cut(s)	1364, 1748, 2210
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	1158
HinfI	GANTC	9 cut(s)	136, 284, 623, 986, 1009, 1030, 1494, 2227, 2732
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	8 cut(s)	84, 479, 784, 1966, 2130, 2354, 2376, 2583
HphI	GGTGA	2 cut(s)	215, 2316
Hpy166II	GTNNAC	6 cut(s)	8, 406, 1594, 1641, 1679, 1936
Hpy188I	TCNGA	7 cut(s)	186, 1786, 1833, 1927, 2106, 2424, 2769
Hpy8I	GTNNAC	6 cut(s)	8, 406, 1594, 1641, 1679, 1936
Hpy99I	CGWCG	2 cut(s)	667, 1686
HpyAV	CCTTC	6 cut(s)	330, 854, 1554, 1993, 2804, 2887
HpyCH4III	ACNGT	7 cut(s)	131, 144, 921, 1017, 2561, 2668, 2708
HpyCH4IV	ACGT	3 cut(s)	821, 859, 903
HpyF3I	CTNAG	9 cut(s)	92, 185, 280, 393, 729, 1317, 1797, 2191, 2450
HpySE526I	ACGT	3 cut(s)	821, 859, 903
Hsp92I	GRCGYC	1 cut(s)	1684
HspAI	GCGC	3 cut(s)	1364, 1748, 2210
KspAI	GTTAAC	1 cut(s)	406
LguI	GCTCTTC	2 cut(s)	712, 1686
LmnI	GCTCC	6 cut(s)	854, 1723, 2037, 2059, 2177, 2695
MaeI	CTAG	4 cut(s)	245, 801, 1464, 1517
MaeII	ACGT	3 cut(s)	821, 859, 903
MfeI	CAATTG	2 cut(s)	1082, 1986
MflI	RGATCY	4 cut(s)	188, 883, 1781, 1804
MhlI	GDGCHC	8 cut(s)	83, 91, 422, 859, 1096, 1216, 1681, 2776
MlsI	TGGCCA	3 cut(s)	291, 834, 2168
MluNI	TGGCCA	3 cut(s)	291, 834, 2168
MlyI	GAGTC	3 cut(s)	632, 1503, 2726
MmeI	TCCRAC	3 cut(s)	903, 2331, 2687
Mox20I	TGGCCA	3 cut(s)	291, 834, 2168
Mph1103I	ATGCAT	2 cut(s)	1399, 2761
MroXI	GAANNNNTTC	1 cut(s)	1695
MscI	TGGCCA	3 cut(s)	291, 834, 2168
MseI	TTAA	9 cut(s)	44, 341, 405, 509, 1182, 1470, 1652, 2348, 2856
MslI	CAYNNNNRTG	2 cut(s)	1402, 2019
Msp20I	TGGCCA	3 cut(s)	291, 834, 2168
MspA1I	CMGCKG	6 cut(s)	1129, 1246, 1259, 1838, 2434, 2443
MspI	CCGG	8 cut(s)	84, 479, 784, 1966, 2130, 2354, 2376, 2583
MunI	CAATTG	2 cut(s)	1082, 1986
Mva1269I	GAATGC	2 cut(s)	2026, 2759
MvaI	CCWGG	5 cut(s)	263, 453, 867, 1382, 2504
NciI	CCSGG	6 cut(s)	784, 1967, 2130, 2355, 2376, 2583
NcoI	CCATGG	1 cut(s)	849
NdeI	CATATG	1 cut(s)	1195
NlaIV	GGNNCC	5 cut(s)	306, 318, 477, 589, 2358
NmuCI	GTSAC	7 cut(s)	556, 1291, 1406, 1872, 2322, 2445, 2678
NsbI	TGCGCA	1 cut(s)	1749
NsiI	ATGCAT	2 cut(s)	1399, 2761
NspI	RCATGY	3 cut(s)	682, 2018, 2086
PaeI	GCATGC	1 cut(s)	2086
PagI	TCATGA	1 cut(s)	2235
PaqCI	CACCTGC	2 cut(s)	946, 2732
PceI	AGGCCT	1 cut(s)	2507
PciSI	GCTCTTC	2 cut(s)	712, 1686
PcsI	WCGNNNNNNNCGW	1 cut(s)	1612
PctI	GAATGC	2 cut(s)	2026, 2759
PdmI	GAANNNNTTC	1 cut(s)	1695
PfeI	GAWTC	6 cut(s)	136, 284, 986, 1009, 1030, 2227
PflMI	CCANNNNNTGG	4 cut(s)	200, 539, 1199, 2164
PfoI	TCCNGGA	4 cut(s)	451, 865, 2128, 2581
PinAI	ACCGGT	1 cut(s)	83
PleI	GAGTC	3 cut(s)	631, 1502, 2726
PmaCI	CACGTG	1 cut(s)	860
PmlI	CACGTG	1 cut(s)	860
PpsI	GAGTC	3 cut(s)	631, 1502, 2726
Ppu21I	YACGTR	1 cut(s)	860
PshBI	ATTAAT	1 cut(s)	1182
Psp124BI	GAGCTC	1 cut(s)	422
Psp6I	CCWGG	5 cut(s)	261, 451, 865, 1380, 2502
PspCI	CACGTG	1 cut(s)	860
PspFI	CCCAGC	1 cut(s)	1838
PspGI	CCWGG	5 cut(s)	261, 451, 865, 1380, 2502
PspN4I	GGNNCC	5 cut(s)	306, 318, 477, 589, 2358
PspPI	GGNCC	9 cut(s)	127, 305, 476, 530, 587, 1982, 2357, 2585, 2684
PstI	CTGCAG	3 cut(s)	1134, 2439, 2541
PstNI	CAGNNNCTG	4 cut(s)	1129, 1876, 2230, 2533
PsuI	RGATCY	4 cut(s)	188, 883, 1781, 1804
PvuII	CAGCTG	4 cut(s)	1129, 1259, 1838, 2434
RsaI	GTAC	3 cut(s)	576, 1458, 1765
RsaNI	GTAC	3 cut(s)	575, 1457, 1764
RseI	CAYNNNNRTG	2 cut(s)	1402, 2019
SacI	GAGCTC	1 cut(s)	422
SapI	GCTCTTC	2 cut(s)	712, 1686
SaqAI	TTAA	9 cut(s)	44, 341, 405, 509, 1182, 1470, 1652, 2348, 2856
Sau96I	GGNCC	9 cut(s)	127, 305, 476, 530, 587, 1982, 2357, 2585, 2684
ScaI	AGTACT	1 cut(s)	1458
SchI	GAGTC	3 cut(s)	632, 1503, 2726
SduI	GDGCHC	8 cut(s)	83, 91, 422, 859, 1096, 1216, 1681, 2776
SfcI	CTRYAG	5 cut(s)	399, 711, 1130, 2435, 2537
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	6 cut(s)	127, 476, 530, 587, 2357, 2585
SmiMI	CAYNNNNRTG	2 cut(s)	1402, 2019
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SphI	GCATGC	1 cut(s)	2086
SseBI	AGGCCT	1 cut(s)	2507
SsiI	CCGC	7 cut(s)	302, 1246, 1843, 2429, 2443, 2483, 2649
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	4 cut(s)	245, 801, 1464, 1517
SstI	GAGCTC	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	2507
StyI	CCWWGG	4 cut(s)	376, 849, 1000, 2494
TaaI	ACNGT	7 cut(s)	131, 144, 921, 1017, 2561, 2668, 2708
TaiI	ACGT	3 cut(s)	824, 862, 906
TaqI	TCGA	7 cut(s)	356, 665, 1440, 1500, 1956, 2011, 2173
TatI	WGTACW	2 cut(s)	574, 1456
TauI	GCSGC	3 cut(s)	1249, 1846, 2651
TfiI	GAWTC	6 cut(s)	136, 284, 986, 1009, 1030, 2227
Tru1I	TTAA	9 cut(s)	44, 341, 405, 509, 1182, 1470, 1652, 2348, 2856
Tru9I	TTAA	9 cut(s)	44, 341, 405, 509, 1182, 1470, 1652, 2348, 2856
TscAI	CASTG	8 cut(s)	75, 520, 1409, 1495, 1881, 2386, 2566, 2649
TseFI	GTSAC	7 cut(s)	556, 1291, 1406, 1872, 2322, 2445, 2678
Tsp45I	GTSAC	7 cut(s)	556, 1291, 1406, 1872, 2322, 2445, 2678
TspDTI	ATGAA	7 cut(s)	342, 509, 1704, 1958, 2162, 2267, 2786
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	8 cut(s)	75, 520, 1409, 1495, 1881, 2386, 2566, 2649
Van91I	CCANNNNNTGG	4 cut(s)	200, 539, 1199, 2164
VneI	GTGCAC	1 cut(s)	1677
VpaK11BI	GGWCC	6 cut(s)	127, 476, 530, 587, 2357, 2585
VspI	ATTAAT	1 cut(s)	1182
XagI	CCTNNNNNAGG	1 cut(s)	2331
XbaI	TCTAGA	1 cut(s)	1516
XceI	RCATGY	3 cut(s)	682, 2018, 2086
XmiI	GTMKAC	1 cut(s)	1593
XmnI	GAANNNNTTC	1 cut(s)	1695
XspI	CTAG	4 cut(s)	245, 801, 1464, 1517
ZrmI	AGTACT	1 cut(s)	1458
Zsp2I	ATGCAT	2 cut(s)	1399, 2761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.