Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004096

Physical Location & Seq

Genomic Coordinates Forward (+)

64779043 .. 64785392

Gene Structure 6350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGGTGCCTTCACGGGTGGCTGGAGGATTAACGCAATCTTCATCGAGTTCTGGAATTTTCTTCCAAGGGGATGGGCAGTCTCAGTCTGTAGTTAACTCTCACTTGAGCTCATCTTTCGGGAACTCTTCTAATTCAATTCCTGGAACTGGGCGTTCAAATTTGGGTCCGGTTTCTGGGGACATGAACAATGCAGTTTTAAGCAGTGTGGCAAATTCAGGTCCAAGTGTTGGGGCAAGTTCTTTGGTCACAGATGCAAACTCTGTACTTTCAGGTGGTCCCCATTTGCAGAGAAGTGCAAGCATCAATAACGAGTCCTACTTACGCTTACCAGCTTCCCCTATGTCATTCTCGTCGAACAATATTAGCATGTCCGGATCATCAATTATGGATGGCTCTTCTGTAGTGCAACAGAATTCTCAGCATGACCAGAATTCCCAACAAATTCAGCAGGGTCAGCAGCACCAGCACCTGCGGCAGCAGGGGACTTCTAGTGCTACATCCTTGCCCACGTCCCAAACTGGCCAAGTTTCCCTTCCCATGGGAGCACGTGTTCCTGGAACTTTTATTCAAGATCCAAATAATTTAGCCCACGTCCAGAAGAAACCACGGTTGGATATCAAGCAGGAAGAAATTATGCAGCAGCAGGTGTTGCAGCAACTACTGCAAAGACAAGATTCCATGCAGTTCCAAGGACGGAATCCACAGTTACATGCCTTGATTCAACAGCAGAGACTACGGCAACAGCACCAGCAACAGCAACAAATTTTTCAGTCCATGCCTCAATTGCAGAGAGCACATATTCAGCAACAGCAGCAGCAGCAGCAACAGCAGTTGCAGTTGAGACAGCAACTTCAACAACAAGCTTTGCAGCCAGCATCTTCCATTAATAAGCGTCCATATGATGGTGGTGTTTGTGCTCGTAGGCTGATGCAATATCTGTATCATCAGCGGCAACGACCAGCTGACAATAGTATTGCGTATTGGAGGAAGTTTGTGACAGAGTATTACTCCCCTCGTGCTAAGAAAAGATGGTGCTTGTCGTTATATGACAATGTTGGGCATCATGCGCTTGGTGTTTTCCCCCAGGCTTCTATGGATGCATGGCAGTGTGACATTTGTGGTTCTAAATCTGGAAGAGGTTTCGAGGCGACCTTTGAAGTACTCCCTAGACTTAATGAGATCAAATTTGGCAGTGGAGTCATCGATGAGCTTTTGTTTCTAGACTTGCCAAGAGAATGTAGATTTCCTTCTGGTGTAATGATGCTGGAATATGGAAAAGCAGTTCAAGAGAGTGTATACGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTTCGTATCGTGTTTACACAAGATTTAAAGATATTGTCTTGGGAATTTTGTGCACGACGCCATGAAGAGCTTCTTCCTCGTAGGCTTGTTGCTCCACAGGTCAATCAGTTGGTTCAGGTTGCACAGAAGTGCCAGAGTACGATTGCTGAAAGTGGATCTGATGGGGTTTCTCAGCAGGATCTACAAGCAAATAGCAATTTGGTTCTGACAGCTGGGCGGCAGCTTGCAAAGAGTTTGGAGTTGCAGTCACTGAATGACTTGGGCTTTTCTAAAAGATATGTGAGGTGTTTGCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCGATTTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCGAATGCAACCAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGTTAGCAAATGTTCAGGGCATGCCAACTGACAGGAACACTCTGAATAAACTAATGGCGTTGCATCCCGTACTAAACAATCAAATGAATAACAACCAGCACATGGCCAGTCGAGGAGCTTTGAGTGGCTCAGCACAAGCAGCTTTAGCGCTGACCAATTACCAGAATCTGCTCATGAGGCAGAACTCAATGAATTCAAATGCAAATTCTCTTCAACAGGAGGCATCTTCGTCTTTCAATAACTCCAACCAAAGTCCATCGTCACCTTTTCAAGGTGCTGCTTCTTTAATACCGGGACCAATGCAGAATTTACCCGGCAGTGGCTATTCAAGTCCCCATCTATCCTCACGACAGCCACATCAGACACCGCAGCTGCAGCAGCGGTCACTCAGTTCTAACAGCTTGCTTCAACAAACCAATCCGCAGAACTCCCAAGGCCAGGTCTTGCAGCAACAGATGATCCAGCAACTGCTGCAGGATATGTCTAATAATAACAGTGGGGGGCAACAATCTCTTCCCGGACCAAATTCTAATGGGAGTTTGACAAGGAATGGGTTGAGTTTTGGAGGTAATAATTCAGCGGCTGCTAATGCTACTCCAACTGTGTCTGGAAGTCACGGCCCTGCTCCAAGCAGGAGTAACAGTTTCAAAGCTGCTGCAAACAGCGACTCTTCAGCAGGTGGTGGTAACAATGCATTCAATCAGAGAGCACAAGAATTACCCTCAAACCTTCATTTGCAAGAGGATATGGTTCAAGACATTGCCCGTGAATTCACAGAAAATGGCTTTTTTAACAATGATCTTGATGATAATATGGGTTACGGCTGGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

866

Amino Acids

95.22

Weight (kDa)

9.16

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	308 - 568	1.9e-65	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62090 AT5G62090 AT5G62090
fragaria_vesca	FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060
malus_domestica	MD01G1197300.v1.1 MD07G1264600.v1.1
prunus_persica	Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1
pyrus_communis	pycom01g20770 pycom07g24320
rosa_chinensis	RchiOBHm_Chr1g0376781
rosa_laevigata	RLG00000026560 RLG00000026570 RLG00000026571
rosa_multiflora	Rmu_sc0002113.1_g000009
rosa_roxburghii	Rroxscaffold_4G00281740
rosa_rugosa	Rorug01G0398100 Rorug01G0398200.1 Rorug01G0398300 Rorug01G0398300
rosa_samantha	Rh1AG415500 Rh1BG375000 Rh1CG388800 Rh1DG405600
rosa_wichuraiana	Rw1G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	477, 634, 2432
Acc36I	ACCTGC	3 cut(s)	477, 634, 2432
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	3 cut(s)	227, 902, 1867
AccI	GTMKAC	1 cut(s)	1296
AccII	CGCG	1 cut(s)	1320
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	7 cut(s)	472, 949, 1546, 2132, 2146, 2186, 2345
AclWI	GGATC	5 cut(s)	382, 566, 1492, 1515, 2218
AcoI	YGGCCR	2 cut(s)	520, 1869
AcuI	CTGAAG	1 cut(s)	2421
AcvI	CACGTG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	1387
AfaI	GTAC	4 cut(s)	264, 1161, 1468, 1836
AfeI	AGCGCT	1 cut(s)	1914
AflIII	ACRYGT	1 cut(s)	547
AjiI	CACGTC	2 cut(s)	510, 592
AjnI	CCWGG	4 cut(s)	139, 553, 1083, 2202
AjuI	GAANNNNNNNTTGG	6 cut(s)	516, 548, 593, 625, 1665, 1697
AleI	CACNNNNGTG	1 cut(s)	1456
AloI	GAACNNNNNNTCC	4 cut(s)	534, 566, 1266, 1298
Alw21I	GWGCWC	6 cut(s)	110, 547, 796, 919, 1384, 2476
Alw26I	GTCTC	3 cut(s)	84, 724, 835
Alw44I	GTGCAC	1 cut(s)	1380
AlwI	GGATC	5 cut(s)	382, 566, 1492, 1515, 2218
AlwNI	CAGNNNCTG	5 cut(s)	469, 1579, 1933, 2233, 2348
Aor13HI	TCCGGA	1 cut(s)	371
Aor51HI	AGCGCT	1 cut(s)	1914
AoxI	GGCC	5 cut(s)	520, 1684, 1869, 2200, 2383
ApaLI	GTGCAC	1 cut(s)	1380
AseI	ATTAAT	1 cut(s)	885
Asp700I	GAANNNNTTC	1 cut(s)	1398
AspLEI	GCGC	2 cut(s)	1069, 1915
AspS9I	GGNCC	7 cut(s)	164, 218, 275, 1685, 2060, 2285, 2384
AsuC2I	CCSGG	4 cut(s)	1670, 2058, 2079, 2283
AsuHPI	GGTGA	1 cut(s)	2019
AvaII	GGWCC	5 cut(s)	164, 218, 275, 2060, 2285
BaeGI	GKGCMC	1 cut(s)	1384
BalI	TGGCCA	2 cut(s)	522, 1871
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	1231, 1263
BauI	CACGAG	1 cut(s)	1014
BbrPI	CACGTG	1 cut(s)	548
Bbv12I	GWGCWC	6 cut(s)	110, 547, 796, 919, 1384, 2476
BccI	CCATC	7 cut(s)	65, 383, 896, 1023, 1484, 2029, 2109
BceAI	ACGGC	2 cut(s)	752, 2398
BciT130I	CCWGG	4 cut(s)	141, 555, 1085, 2204
BcnI	CCSGG	4 cut(s)	1670, 2058, 2079, 2283
BcoDI	GTCTC	3 cut(s)	84, 724, 835
BfaI	CTAG	3 cut(s)	489, 1167, 1220
BfmI	CTRYAG	4 cut(s)	87, 399, 2138, 2237
BfoI	RGCGCY	1 cut(s)	1916
BfuAI	ACCTGC	3 cut(s)	477, 634, 2432
BlpI	GCTNAGC	1 cut(s)	1894
BmcAI	AGTACT	1 cut(s)	1161
Bme1390I	CCNGG	8 cut(s)	141, 555, 1085, 1670, 2058, 2079, 2204, 2283
Bme18I	GGWCC	5 cut(s)	164, 218, 275, 2060, 2285
BmgBI	CACGTC	2 cut(s)	510, 592
BmgT120I	GGNCC	7 cut(s)	164, 218, 275, 1685, 2060, 2285, 2384
BmiI	GGNNCC	4 cut(s)	6, 165, 277, 2061
BmrFI	CCNGG	8 cut(s)	141, 555, 1085, 1670, 2058, 2079, 2204, 2283
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	992, 1024
BpmI	CTGGAG	2 cut(s)	42, 1721
Bpu1102I	GCTNAGC	1 cut(s)	1894
BpuEI	CTTGAG	1 cut(s)	124
BpuMI	CCSGG	4 cut(s)	1670, 2058, 2079, 2283
Bsa29I	ATCGAT	2 cut(s)	1203, 1659
BsaAI	YACGTR	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	1387
BsaJI	CCNNGG	6 cut(s)	64, 537, 605, 688, 1083, 2197
BsaWI	WCCGGW	2 cut(s)	166, 371
BsaXI	ACNNNNNCTCC	6 cut(s)	534, 564, 1559, 1589, 2392, 2422
Bse1I	ACTGG	3 cut(s)	151, 523, 1872
Bse3DI	GCAATG	1 cut(s)	2523
BseAI	TCCGGA	1 cut(s)	371
BseBI	CCWGG	4 cut(s)	141, 555, 1085, 2204
BseCI	ATCGAT	2 cut(s)	1203, 1659
BseDI	CCNNGG	6 cut(s)	64, 537, 605, 688, 1083, 2197
BseGI	GGATG	5 cut(s)	76, 394, 497, 1102, 1828
BseMI	GCAATG	1 cut(s)	2523
BseMII	CTCAG	5 cut(s)	95, 431, 1514, 1908, 2167
BseNI	ACTGG	3 cut(s)	151, 523, 1872
BseRI	GAGGAG	1 cut(s)	1893
BseSI	GKGCMC	1 cut(s)	1384
BseYI	CCCAGC	1 cut(s)	1541
Bsh1236I	CGCG	1 cut(s)	1320
BshFI	GGCC	5 cut(s)	522, 1686, 1871, 2202, 2385
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	1203, 1659
BsiHKAI	GWGCWC	6 cut(s)	110, 547, 796, 919, 1384, 2476
BsiSI	CCGG	6 cut(s)	167, 372, 1669, 2057, 2079, 2283
BslFI	GGGAC	6 cut(s)	191, 261, 496, 496, 2073, 2082
BsmAI	GTCTC	3 cut(s)	84, 724, 835
BsmFI	GGGAC	6 cut(s)	191, 261, 496, 496, 2073, 2082
BsmI	GAATGC	2 cut(s)	1729, 2459
BsnI	GGCC	5 cut(s)	522, 1686, 1871, 2202, 2385
Bsp1286I	GDGCHC	6 cut(s)	110, 547, 796, 919, 1384, 2476
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
Bsp1720I	GCTNAGC	1 cut(s)	1894
Bsp19I	CCATGG	1 cut(s)	537
Bsp68I	TCGCGA	1 cut(s)	1320
BspACI	CCGC	7 cut(s)	472, 949, 1546, 2132, 2146, 2186, 2345
BspANI	GGCC	5 cut(s)	522, 1686, 1871, 2202, 2385
BspCNI	CTCAG	5 cut(s)	94, 430, 1513, 1907, 2166
BspDI	ATCGAT	2 cut(s)	1203, 1659
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	1320
BspHI	TCATGA	1 cut(s)	1938
BspLI	GGNNCC	4 cut(s)	6, 165, 277, 2061
BspMAI	CTGCAG	2 cut(s)	2142, 2241
BspMI	ACCTGC	3 cut(s)	477, 634, 2432
BspPI	GGATC	5 cut(s)	382, 566, 1492, 1515, 2218
BspQI	GCTCTTC	2 cut(s)	400, 1389
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	2523
BsrI	ACTGG	3 cut(s)	151, 523, 1872
BssECI	CCNNGG	6 cut(s)	64, 537, 605, 688, 1083, 2197
BssMI	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
BssNAI	GTATAC	1 cut(s)	1297
BssNI	GRCGYC	1 cut(s)	1387
BssSI	CACGAG	1 cut(s)	1014
BssT1I	CCWWGG	4 cut(s)	64, 537, 688, 2197
Bst1107I	GTATAC	1 cut(s)	1297
Bst2BI	CACGAG	1 cut(s)	1014
Bst2UI	CCWGG	4 cut(s)	141, 555, 1085, 2204
Bst4CI	ACNGT	5 cut(s)	609, 705, 2261, 2368, 2408
Bst6I	CTCTTC	7 cut(s)	130, 400, 1129, 1389, 1980, 2283, 2440
BstACI	GRCGYC	1 cut(s)	1387
BstAPI	GCANNNNNTGC	4 cut(s)	649, 661, 1750, 2236
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	5 cut(s)	298, 873, 1554, 1787, 2168
BstDEI	CTNAG	6 cut(s)	81, 417, 1020, 1500, 1894, 2153
BstDSI	CCRYGG	2 cut(s)	537, 605
BstENI	CCTNNNNNAGG	1 cut(s)	2034
BstF5I	GGATG	5 cut(s)	76, 394, 497, 1102, 1828
BstFNI	CGCG	1 cut(s)	1320
BstH2I	RGCGCY	1 cut(s)	1916
BstHHI	GCGC	2 cut(s)	1069, 1915
BstKTI	GATC	8 cut(s)	377, 574, 1182, 1487, 1510, 1659, 2226, 2566
BstMAI	GTCTC	3 cut(s)	84, 724, 835
BstMBI	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
BstNI	CCWGG	4 cut(s)	141, 555, 1085, 2204
BstNSI	RCATGY	4 cut(s)	370, 713, 1721, 1789
BstSCI	CCNGG	8 cut(s)	139, 553, 1083, 1668, 2056, 2077, 2202, 2281
BstSFI	CTRYAG	4 cut(s)	87, 399, 2138, 2237
BstSLI	GKGCMC	1 cut(s)	1384
BstUI	CGCG	1 cut(s)	1320
BstX2I	RGATCY	3 cut(s)	571, 1484, 1507
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	3 cut(s)	571, 1484, 1507
BstZ17I	GTATAC	1 cut(s)	1297
Bsu15I	ATCGAT	2 cut(s)	1203, 1659
BsuRI	GGCC	5 cut(s)	522, 1686, 1871, 2202, 2385
BsuTUI	ATCGAT	2 cut(s)	1203, 1659
BtgI	CCRYGG	2 cut(s)	537, 605
BtrI	CACGTC	2 cut(s)	510, 592
BtsCI	GGATG	5 cut(s)	76, 394, 497, 1102, 1828
BtsI	GCAGTG	4 cut(s)	208, 1112, 1198, 2089
BtsIMutI	CAGTG	6 cut(s)	208, 1112, 1198, 1577, 2089, 2266
BtuMI	TCGCGA	1 cut(s)	1320
BveI	ACCTGC	3 cut(s)	477, 634, 2432
Cac8I	GCNNGC	5 cut(s)	298, 873, 1554, 1787, 2168
CaiI	CAGNNNCTG	5 cut(s)	469, 1579, 1933, 2233, 2348
CciI	TCATGA	1 cut(s)	1938
CfoI	GCGC	2 cut(s)	1069, 1915
Cfr13I	GGNCC	7 cut(s)	164, 218, 275, 1685, 2060, 2285, 2384
ClaI	ATCGAT	2 cut(s)	1203, 1659
CseI	GACGC	2 cut(s)	881, 1395
Csp6I	GTAC	4 cut(s)	263, 1160, 1467, 1835
CviQI	GTAC	4 cut(s)	263, 1160, 1467, 1835
DdeI	CTNAG	6 cut(s)	81, 417, 1020, 1500, 1894, 2153
DpnI	GATC	8 cut(s)	376, 573, 1181, 1486, 1509, 1658, 2225, 2565
DpnII	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
DraI	TTTAAA	1 cut(s)	1356
EaeI	YGGCCR	2 cut(s)	520, 1869
Eam1104I	CTCTTC	7 cut(s)	130, 400, 1129, 1389, 1980, 2283, 2440
EarI	CTCTTC	7 cut(s)	130, 400, 1129, 1389, 1980, 2283, 2440
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	4 cut(s)	64, 537, 688, 2197
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	2 cut(s)	616, 1626
Eco47I	GGWCC	5 cut(s)	164, 218, 275, 2060, 2285
Eco47III	AGCGCT	1 cut(s)	1914
Eco53kI	GAGCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	2421
Eco72I	CACGTG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	2034
EcoRI	GAATTC	4 cut(s)	412, 430, 1957, 2534
EcoRII	CCWGG	4 cut(s)	139, 553, 1083, 2202
EcoRV	GATATC	2 cut(s)	616, 1626
EcoT14I	CCWWGG	4 cut(s)	64, 537, 688, 2197
EcoT22I	ATGCAT	2 cut(s)	1102, 2461
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	4 cut(s)	64, 537, 688, 2197
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 1386, 1418
FaqI	GGGAC	6 cut(s)	191, 261, 496, 496, 2073, 2082
FauNDI	CATATG	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	1296
FokI	GGATG	5 cut(s)	83, 401, 484, 1109, 1815
FriOI	GRGCYC	1 cut(s)	110
FspBI	CTAG	3 cut(s)	489, 1167, 1220
GlaI	GCGC	2 cut(s)	1068, 1914
GsaI	CCCAGC	1 cut(s)	1545
GsuI	CTGGAG	2 cut(s)	42, 1721
HaeII	RGCGCY	1 cut(s)	1916
HaeIII	GGCC	5 cut(s)	522, 1686, 1871, 2202, 2385
HapII	CCGG	6 cut(s)	167, 372, 1669, 2057, 2079, 2283
HgaI	GACGC	2 cut(s)	881, 1395
HhaI	GCGC	2 cut(s)	1069, 1915
Hin1I	GRCGYC	1 cut(s)	1387
Hin6I	GCGC	2 cut(s)	1067, 1913
HinP1I	GCGC	2 cut(s)	1067, 1913
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	7 cut(s)	311, 674, 697, 718, 1197, 1930, 2432
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	6 cut(s)	167, 372, 1669, 2057, 2079, 2283
HphI	GGTGA	1 cut(s)	2019
Hpy166II	GTNNAC	5 cut(s)	94, 1297, 1344, 1382, 1639
Hpy188I	TCNGA	6 cut(s)	1489, 1536, 1630, 1809, 2127, 2469
Hpy8I	GTNNAC	5 cut(s)	94, 1297, 1344, 1382, 1639
Hpy99I	CGWCG	2 cut(s)	355, 1389
HpyAV	CCTTC	6 cut(s)	18, 542, 1257, 1696, 2504, 2587
HpyCH4III	ACNGT	5 cut(s)	609, 705, 2261, 2368, 2408
HpyCH4IV	ACGT	3 cut(s)	509, 547, 591
HpyF3I	CTNAG	6 cut(s)	81, 417, 1020, 1500, 1894, 2153
HpySE526I	ACGT	3 cut(s)	509, 547, 591
Hsp92I	GRCGYC	1 cut(s)	1387
HspAI	GCGC	2 cut(s)	1067, 1913
Kpn2I	TCCGGA	1 cut(s)	371
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
LguI	GCTCTTC	2 cut(s)	400, 1389
LmnI	GCTCC	6 cut(s)	542, 1426, 1740, 1762, 1880, 2395
MaeI	CTAG	3 cut(s)	489, 1167, 1220
MaeII	ACGT	3 cut(s)	509, 547, 591
MalI	GATC	8 cut(s)	376, 573, 1181, 1486, 1509, 1658, 2225, 2565
MboI	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
MfeI	CAATTG	2 cut(s)	782, 1689
MflI	RGATCY	3 cut(s)	571, 1484, 1507
MhlI	GDGCHC	6 cut(s)	110, 547, 796, 919, 1384, 2476
MlsI	TGGCCA	2 cut(s)	522, 1871
MluNI	TGGCCA	2 cut(s)	522, 1871
MlyI	GAGTC	3 cut(s)	320, 1206, 2426
MmeI	TCCRAC	3 cut(s)	591, 2034, 2387
Mox20I	TGGCCA	2 cut(s)	522, 1871
Mph1103I	ATGCAT	2 cut(s)	1102, 2461
MroI	TCCGGA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	1398
MscI	TGGCCA	2 cut(s)	522, 1871
MseI	TTAA	8 cut(s)	29, 93, 197, 885, 1173, 1355, 2051, 2556
MslI	CAYNNNNRTG	3 cut(s)	1105, 1456, 1722
Msp20I	TGGCCA	2 cut(s)	522, 1871
MspA1I	CMGCKG	6 cut(s)	949, 962, 1541, 2137, 2146, 2345
MspI	CCGG	6 cut(s)	167, 372, 1669, 2057, 2079, 2283
MspR9I	CCNGG	8 cut(s)	141, 555, 1085, 1670, 2058, 2079, 2204, 2283
MunI	CAATTG	2 cut(s)	782, 1689
Mva1269I	GAATGC	2 cut(s)	1729, 2459
MvaI	CCWGG	4 cut(s)	141, 555, 1085, 2204
MvnI	CGCG	1 cut(s)	1320
NciI	CCSGG	4 cut(s)	1670, 2058, 2079, 2283
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
NlaIV	GGNNCC	4 cut(s)	6, 165, 277, 2061
NmuCI	GTSAC	7 cut(s)	244, 994, 1109, 1575, 2025, 2148, 2378
NruI	TCGCGA	1 cut(s)	1320
NsiI	ATGCAT	2 cut(s)	1102, 2461
NspI	RCATGY	4 cut(s)	370, 713, 1721, 1789
OliI	CACNNNNGTG	1 cut(s)	1456
PaeI	GCATGC	1 cut(s)	1789
PagI	TCATGA	1 cut(s)	1938
PaqCI	CACCTGC	3 cut(s)	477, 634, 2432
PciSI	GCTCTTC	2 cut(s)	400, 1389
PctI	GAATGC	2 cut(s)	1729, 2459
PdmI	GAANNNNTTC	1 cut(s)	1398
PfeI	GAWTC	4 cut(s)	674, 697, 718, 1930
PflMI	CCANNNNNTGG	3 cut(s)	227, 902, 1867
PfoI	TCCNGGA	3 cut(s)	139, 553, 2281
PleI	GAGTC	3 cut(s)	319, 1205, 2426
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	3 cut(s)	319, 1205, 2426
Ppu21I	YACGTR	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	4 cut(s)	139, 553, 1083, 2202
PspCI	CACGTG	1 cut(s)	548
PspFI	CCCAGC	1 cut(s)	1541
PspGI	CCWGG	4 cut(s)	139, 553, 1083, 2202
PspN4I	GGNNCC	4 cut(s)	6, 165, 277, 2061
PspPI	GGNCC	7 cut(s)	164, 218, 275, 1685, 2060, 2285, 2384
PstI	CTGCAG	2 cut(s)	2142, 2241
PstNI	CAGNNNCTG	5 cut(s)	469, 1579, 1933, 2233, 2348
PsuI	RGATCY	3 cut(s)	571, 1484, 1507
PvuII	CAGCTG	3 cut(s)	962, 1541, 2137
RruI	TCGCGA	1 cut(s)	1320
RsaI	GTAC	4 cut(s)	264, 1161, 1468, 1836
RsaNI	GTAC	4 cut(s)	263, 1160, 1467, 1835
RseI	CAYNNNNRTG	3 cut(s)	1105, 1456, 1722
SacI	GAGCTC	1 cut(s)	110
SapI	GCTCTTC	2 cut(s)	400, 1389
SaqAI	TTAA	8 cut(s)	29, 93, 197, 885, 1173, 1355, 2051, 2556
Sau3AI	GATC	8 cut(s)	374, 571, 1179, 1484, 1507, 1656, 2223, 2563
Sau96I	GGNCC	7 cut(s)	164, 218, 275, 1685, 2060, 2285, 2384
ScaI	AGTACT	1 cut(s)	1161
SchI	GAGTC	3 cut(s)	320, 1206, 2426
ScrFI	CCNGG	8 cut(s)	141, 555, 1085, 1670, 2058, 2079, 2204, 2283
SduI	GDGCHC	6 cut(s)	110, 547, 796, 919, 1384, 2476
SfcI	CTRYAG	4 cut(s)	87, 399, 2138, 2237
SinI	GGWCC	5 cut(s)	164, 218, 275, 2060, 2285
SmiMI	CAYNNNNRTG	3 cut(s)	1105, 1456, 1722
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SphI	GCATGC	1 cut(s)	1789
SsiI	CCGC	7 cut(s)	472, 949, 1546, 2132, 2146, 2186, 2345
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	3 cut(s)	489, 1167, 1220
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	8 cut(s)	139, 553, 1083, 1668, 2056, 2077, 2202, 2281
StyI	CCWWGG	4 cut(s)	64, 537, 688, 2197
TaaI	ACNGT	5 cut(s)	609, 705, 2261, 2368, 2408
TaiI	ACGT	3 cut(s)	512, 550, 594
TaqI	TCGA	7 cut(s)	44, 353, 1143, 1203, 1659, 1714, 1876
TatI	WGTACW	2 cut(s)	262, 1159
TauI	GCSGC	4 cut(s)	475, 952, 1549, 2348
TfiI	GAWTC	4 cut(s)	674, 697, 718, 1930
Tru1I	TTAA	8 cut(s)	29, 93, 197, 885, 1173, 1355, 2051, 2556
Tru9I	TTAA	8 cut(s)	29, 93, 197, 885, 1173, 1355, 2051, 2556
TscAI	CASTG	6 cut(s)	208, 1112, 1198, 1584, 2089, 2266
TseFI	GTSAC	7 cut(s)	244, 994, 1109, 1575, 2025, 2148, 2378
Tsp45I	GTSAC	7 cut(s)	244, 994, 1109, 1575, 2025, 2148, 2378
TspDTI	ATGAA	7 cut(s)	30, 197, 1407, 1661, 1865, 1970, 2486
TspGWI	ACGGA	1 cut(s)	709
TspRI	CASTG	6 cut(s)	208, 1112, 1198, 1584, 2089, 2266
Van91I	CCANNNNNTGG	3 cut(s)	227, 902, 1867
VneI	GTGCAC	1 cut(s)	1380
VpaK11BI	GGWCC	5 cut(s)	164, 218, 275, 2060, 2285
VspI	ATTAAT	1 cut(s)	885
XagI	CCTNNNNNAGG	1 cut(s)	2034
XbaI	TCTAGA	1 cut(s)	1219
XceI	RCATGY	4 cut(s)	370, 713, 1721, 1789
XmiI	GTMKAC	1 cut(s)	1296
XmnI	GAANNNNTTC	1 cut(s)	1398
XspI	CTAG	3 cut(s)	489, 1167, 1220
ZrmI	AGTACT	1 cut(s)	1161
Zsp2I	ATGCAT	2 cut(s)	1102, 2461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.