Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004096

Physical Location & Seq

Genomic Coordinates Reverse (-)

3925708 .. 3932039

Gene Structure 6332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGGTGCCTTCACGGGTGGCTGGAGGATTAACGCAATCTTCATCGAGTTCTGGAATTTTCTTCCAAGGGGATGGGCAGTCTCAGTCTGTAGTTAACTCTCACTTGAGCTCATCTTTCGGGAACTCTTCTAATTCAATTCCTGGAACTGGGCGTTCAAATTTGGGTCCGGTTTCTGGGGACATGAACAATGCAGTTTTAAGCAGTGTGGCAAATTCAGGTCCAAGTGTTGGGGCAAGTTCTTTGGTCACAGATGCAAACTCTGTACTTTCAGGTGGTCCCCATTTGCAGAGAAGTGCAAGCATCAATAACGAGTCCTACTTACGCTTACCAGCTTCCCCTATGTCATTCTCGTCGAACAATATTAGCATGTCCGGATCATCAATTATGGATGGCTCTTCTGTAGTGCAACAGAATTCTCAGCATGACCAGAATTCCCAACAAATTCAGCAGGGTCAGCAGCACCAGCACCCGCGGCAGCAGGGGACTTCTAGCGCTACATCCTTACCCACGTCCCAAACTGGCCAAGTTTCCCTTCCCATGGGAGCACGTGTTCCTGGAACTTTTATTCAAGATCCAAATAATTTAGCCCACATCCAGAAGAAACCACGGTTGGATATCAAGCAGGAAGAAATTATGCAGCAGCAGGTGTTACAGCAACTACTGCAAAGACAAGATTCCATGCAGTTCCAAGGACGGAATCCACAGTTACAAGCCTTGATTCAACAGCAGAGACTACGGCAACAGCACCAGCAACAGCAACAAATTTTGCAGTCCATGCCTCAATTGCAGAGAGCAGCACATATTCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGTTGAGACAGCAACTTCAACAACAAGCTTTGCAGCCAGCATCTTCCATTAATAAGCGTCCATATGATGGTGGTGTTTGTGCTCGTAGGCTGATGCAATATCTGTATCATCAGCGGCAACGACCAGCTGACAATAGTATTGCGTATTGGAGGAAGTTTGTGACAGAGTATTACTCTCCTCGTGCTAAGAAAAGATGGTGCTTGTCGTTATATGACAATGTTGGGCATCATGCGCTTGGTGTTTTCCCCCAGGCTTCTATGGATGCATGGCAGTGTGACATTTGTGGTTCTAAATCTGGAAGAGGTTTCGAGGCGACCTTTGAAGTACTCCCTAGACTTAATGAGATCAAATTTGGCAGTGGAGTCATCGATGAGCTTTTGTTTCTAGACTTGCCAAGAGAATGTAGATTTTCTTCTGGTGTAATGATGCTGGAATATGGAAAAGCAGTTCAAGAGAGTGTATACGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTTCGTATCGTGTTTTCACAAGATTTAAAGATATTGTCTTGGGAATTTTGTGCACGACGCCATGAAGAGCTTCTTCCTCGTAGGCTTGTTGCTCCACAGGTCAATCAGTTGGTTCAGGTTGCACAGAAGTGCCAGAGTACGATTGCTGAAAGTGGATCTGATGGGGTTTCTCAGCAGGATCTACAAGCAAATAGCAATTTGGTTCTGACAGCTGGGCGGCAGCTTGCAAAGAGTTTGGAGTTGCAGTCACTGAATGACTTGGGCTTTTCTAAAAGATATGTGAGGTGTTTGCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCGATTTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCGAATGCAACCAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCATCTAGCAAATGTTCAGGGCATGCCAACTGACAGGAACACACTGAATAAGCTAATGGCATTGCATCCCGGACTAAACAATCAGATGAATAACAACCAGCACATGGCCAGTCGGGGAGCTTTGAGTGGCTCAGCACAAGCAGCTTTAGCGCTGACCAATTACCAGAATCTGCTCATGAGGCAGAACTCAATGAATTCAAATGCAAATTCTCTTCAACAGGAGGCATCTTCGTCTTTCAATAACTCCAACCAAAGTCCATCGTCACCTTTTCAAGGTGCTGCTGCTTTAATACCGGGACCAATGCAGAATTTACCCGGCAGTGGCTATTCAAGTCCCCATCTATCCTCACGACAGCCACATCAGACACCGCAGCTGCAGCAGCGGTCACTCAGTTCTAACAGCTTGCTTCAACAAACCAATCCGCAGAACTCCCAAGGCAACCCGGCCTTGCCGCAACATTTGATCCAGCAACTGCTGCAGGAGATGTCTAATAATAACAGTGGGGGACAACAATCTCTTCCCGGACCAAATTCTAATGGGAGTTTGACAAGGAATGGGTTGAGTTTTGGAGGTAATAATTCAGCGGCTGCTAATGCTACTCCAACTGTGTCTGGAAGTCATGGCCCTGCTCCAAGCAGGAGTAACAGTTTCAAAGCTGCTGCAAACAGCGACTCTTCAGCAGGTGGTGGTAACAATGCATTCAATCAGAGAGCACAAGAATTACCCTCGAACCTTCATTTGCAAGAGGATATGGGTCAAGACATTGCCCGTGAATTCACAGAAAATGGCTTTTTTAACAATGATCTTGATGATAATATGGGTTACGGCTGGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

866

Amino Acids

94.9

Weight (kDa)

9.16

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	307 - 567	1.1e-65	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62090 AT5G62090 AT5G62090
fragaria_vesca	FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060 FvH4_7g29060
malus_domestica	MD01G1197300.v1.1 MD07G1264600.v1.1
prunus_persica	Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1 Prupe.2G290500_v2.0.a1
pyrus_communis	pycom01g20770 pycom07g24320
rosa_chinensis	RchiOBHm_Chr1g0376781
rosa_laevigata	RLG00000026560 RLG00000026570 RLG00000026571
rosa_multiflora	Rmu_sc0002113.1_g000009
rosa_roxburghii	Rroxscaffold_4G00281740
rosa_rugosa	Rorug01G0398100 Rorug01G0398200.1 Rorug01G0398300 Rorug01G0398300
rosa_samantha	Rh1AG415500 Rh1BG375000 Rh1CG388800 Rh1DG405600
rosa_wichuraiana	Rw1G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	634, 2432
Acc36I	ACCTGC	2 cut(s)	634, 2432
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	3 cut(s)	227, 899, 1864
AccI	GTMKAC	1 cut(s)	1293
AccII	CGCG	2 cut(s)	472, 1317
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	9 cut(s)	470, 472, 946, 1543, 2129, 2143, 2183, 2213, 2345
AclWI	GGATC	5 cut(s)	382, 566, 1489, 1512, 2218
AcoI	YGGCCR	2 cut(s)	520, 1866
AcuI	CTGAAG	1 cut(s)	2421
AcvI	CACGTG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	1384
AfaI	GTAC	3 cut(s)	264, 1158, 1465
AfeI	AGCGCT	2 cut(s)	493, 1911
AflIII	ACRYGT	1 cut(s)	547
AjiI	CACGTC	1 cut(s)	510
AjnI	CCWGG	3 cut(s)	139, 553, 1080
AjuI	GAANNNNNNNTTGG	6 cut(s)	516, 548, 593, 625, 1662, 1694
AleI	CACNNNNGTG	1 cut(s)	1453
AloI	GAACNNNNNNTCC	4 cut(s)	534, 566, 1263, 1295
Alw21I	GWGCWC	5 cut(s)	110, 547, 916, 1381, 2476
Alw26I	GTCTC	3 cut(s)	84, 724, 832
Alw44I	GTGCAC	1 cut(s)	1377
AlwI	GGATC	5 cut(s)	382, 566, 1489, 1512, 2218
AlwNI	CAGNNNCTG	4 cut(s)	1576, 1930, 2233, 2348
Aor13HI	TCCGGA	1 cut(s)	371
Aor51HI	AGCGCT	2 cut(s)	493, 1911
AoxI	GGCC	5 cut(s)	520, 1681, 1866, 2205, 2383
ApaLI	GTGCAC	1 cut(s)	1377
AseI	ATTAAT	1 cut(s)	882
Asp700I	GAANNNNTTC	1 cut(s)	1395
AspLEI	GCGC	3 cut(s)	494, 1066, 1912
AspS9I	GGNCC	7 cut(s)	164, 218, 275, 1682, 2057, 2285, 2384
AsuC2I	CCSGG	6 cut(s)	1667, 1830, 2055, 2076, 2204, 2283
AsuHPI	GGTGA	1 cut(s)	2016
AvaII	GGWCC	5 cut(s)	164, 218, 275, 2057, 2285
BaeGI	GKGCMC	1 cut(s)	1381
BalI	TGGCCA	2 cut(s)	522, 1868
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	1228, 1260
BauI	CACGAG	1 cut(s)	1011
BbrPI	CACGTG	1 cut(s)	548
Bbv12I	GWGCWC	5 cut(s)	110, 547, 916, 1381, 2476
BccI	CCATC	7 cut(s)	65, 383, 893, 1020, 1481, 2026, 2106
BceAI	ACGGC	1 cut(s)	752
BciT130I	CCWGG	3 cut(s)	141, 555, 1082
BcnI	CCSGG	6 cut(s)	1667, 1830, 2055, 2076, 2204, 2283
BcoDI	GTCTC	3 cut(s)	84, 724, 832
BfaI	CTAG	4 cut(s)	489, 1164, 1217, 1766
BfmI	CTRYAG	4 cut(s)	87, 399, 2135, 2237
BfoI	RGCGCY	2 cut(s)	495, 1913
BfuAI	ACCTGC	2 cut(s)	634, 2432
BlpI	GCTNAGC	1 cut(s)	1891
BmcAI	AGTACT	1 cut(s)	1158
Bme1390I	CCNGG	9 cut(s)	141, 555, 1082, 1667, 1830, 2055, 2076, 2204, 2283
Bme18I	GGWCC	5 cut(s)	164, 218, 275, 2057, 2285
BmgBI	CACGTC	1 cut(s)	510
BmgT120I	GGNCC	7 cut(s)	164, 218, 275, 1682, 2057, 2285, 2384
BmiI	GGNNCC	4 cut(s)	6, 165, 277, 2058
BmrFI	CCNGG	9 cut(s)	141, 555, 1082, 1667, 1830, 2055, 2076, 2204, 2283
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	989, 1021
BpmI	CTGGAG	2 cut(s)	42, 1718
Bpu1102I	GCTNAGC	1 cut(s)	1891
BpuEI	CTTGAG	1 cut(s)	124
BpuMI	CCSGG	6 cut(s)	1667, 1830, 2055, 2076, 2204, 2283
Bsa29I	ATCGAT	2 cut(s)	1200, 1656
BsaAI	YACGTR	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	1384
BsaJI	CCNNGG	7 cut(s)	64, 470, 537, 605, 688, 1080, 2194
BsaWI	WCCGGW	2 cut(s)	166, 371
BsaXI	ACNNNNNCTCC	6 cut(s)	534, 564, 1556, 1586, 2392, 2422
Bse1I	ACTGG	3 cut(s)	151, 523, 1869
Bse3DI	GCAATG	2 cut(s)	1820, 2523
BseAI	TCCGGA	1 cut(s)	371
BseBI	CCWGG	3 cut(s)	141, 555, 1082
BseCI	ATCGAT	2 cut(s)	1200, 1656
BseDI	CCNNGG	7 cut(s)	64, 470, 537, 605, 688, 1080, 2194
BseGI	GGATG	6 cut(s)	76, 394, 497, 591, 1099, 1825
BseMI	GCAATG	2 cut(s)	1820, 2523
BseMII	CTCAG	5 cut(s)	95, 431, 1511, 1905, 2164
BseNI	ACTGG	3 cut(s)	151, 523, 1869
BseRI	GAGGAG	1 cut(s)	999
BseSI	GKGCMC	1 cut(s)	1381
BseYI	CCCAGC	1 cut(s)	1538
Bsh1236I	CGCG	2 cut(s)	472, 1317
BshFI	GGCC	5 cut(s)	522, 1683, 1868, 2207, 2385
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	1200, 1656
BsiHKAI	GWGCWC	5 cut(s)	110, 547, 916, 1381, 2476
BsiSI	CCGG	8 cut(s)	167, 372, 1666, 1830, 2054, 2076, 2204, 2283
BslFI	GGGAC	7 cut(s)	191, 261, 496, 496, 2070, 2079, 2280
BsmAI	GTCTC	3 cut(s)	84, 724, 832
BsmFI	GGGAC	7 cut(s)	191, 261, 496, 496, 2070, 2079, 2280
BsmI	GAATGC	2 cut(s)	1726, 2459
BsnI	GGCC	5 cut(s)	522, 1683, 1868, 2207, 2385
Bsp1286I	GDGCHC	5 cut(s)	110, 547, 916, 1381, 2476
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
Bsp1720I	GCTNAGC	1 cut(s)	1891
Bsp19I	CCATGG	1 cut(s)	537
Bsp68I	TCGCGA	1 cut(s)	1317
BspACI	CCGC	9 cut(s)	470, 472, 946, 1543, 2129, 2143, 2183, 2213, 2345
BspANI	GGCC	5 cut(s)	522, 1683, 1868, 2207, 2385
BspCNI	CTCAG	5 cut(s)	94, 430, 1510, 1904, 2163
BspDI	ATCGAT	2 cut(s)	1200, 1656
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	2 cut(s)	472, 1317
BspHI	TCATGA	1 cut(s)	1935
BspLI	GGNNCC	4 cut(s)	6, 165, 277, 2058
BspMAI	CTGCAG	2 cut(s)	2139, 2241
BspMI	ACCTGC	2 cut(s)	634, 2432
BspPI	GGATC	5 cut(s)	382, 566, 1489, 1512, 2218
BspQI	GCTCTTC	2 cut(s)	400, 1386
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	1820, 2523
BsrI	ACTGG	3 cut(s)	151, 523, 1869
BssECI	CCNNGG	7 cut(s)	64, 470, 537, 605, 688, 1080, 2194
BssMI	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
BssNAI	GTATAC	1 cut(s)	1294
BssNI	GRCGYC	1 cut(s)	1384
BssSI	CACGAG	1 cut(s)	1011
BssT1I	CCWWGG	4 cut(s)	64, 537, 688, 2194
Bst1107I	GTATAC	1 cut(s)	1294
Bst2BI	CACGAG	1 cut(s)	1011
Bst2UI	CCWGG	3 cut(s)	141, 555, 1082
Bst4CI	ACNGT	5 cut(s)	609, 705, 2261, 2368, 2408
Bst6I	CTCTTC	7 cut(s)	130, 400, 1126, 1386, 1977, 2283, 2440
BstACI	GRCGYC	1 cut(s)	1384
BstAPI	GCANNNNNTGC	5 cut(s)	661, 775, 829, 1747, 2236
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	5 cut(s)	298, 870, 1551, 1784, 2165
BstDEI	CTNAG	6 cut(s)	81, 417, 1017, 1497, 1891, 2150
BstDSI	CCRYGG	3 cut(s)	470, 537, 605
BstENI	CCTNNNNNAGG	1 cut(s)	2031
BstF5I	GGATG	6 cut(s)	76, 394, 497, 591, 1099, 1825
BstFNI	CGCG	2 cut(s)	472, 1317
BstH2I	RGCGCY	2 cut(s)	495, 1913
BstHHI	GCGC	3 cut(s)	494, 1066, 1912
BstKTI	GATC	8 cut(s)	377, 574, 1179, 1484, 1507, 1656, 2226, 2566
BstMAI	GTCTC	3 cut(s)	84, 724, 832
BstMBI	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
BstNI	CCWGG	3 cut(s)	141, 555, 1082
BstNSI	RCATGY	3 cut(s)	370, 1718, 1786
BstSCI	CCNGG	9 cut(s)	139, 553, 1080, 1665, 1828, 2053, 2074, 2202, 2281
BstSFI	CTRYAG	4 cut(s)	87, 399, 2135, 2237
BstSLI	GKGCMC	1 cut(s)	1381
BstUI	CGCG	2 cut(s)	472, 1317
BstX2I	RGATCY	3 cut(s)	571, 1481, 1504
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	3 cut(s)	571, 1481, 1504
BstZ17I	GTATAC	1 cut(s)	1294
Bsu15I	ATCGAT	2 cut(s)	1200, 1656
BsuRI	GGCC	5 cut(s)	522, 1683, 1868, 2207, 2385
BsuTUI	ATCGAT	2 cut(s)	1200, 1656
BtgI	CCRYGG	3 cut(s)	470, 537, 605
BtrI	CACGTC	1 cut(s)	510
BtsCI	GGATG	6 cut(s)	76, 394, 497, 591, 1099, 1825
BtsI	GCAGTG	4 cut(s)	208, 1109, 1195, 2086
BtsIMutI	CAGTG	7 cut(s)	208, 1109, 1195, 1574, 1802, 2086, 2266
BtuMI	TCGCGA	1 cut(s)	1317
BveI	ACCTGC	2 cut(s)	634, 2432
Cac8I	GCNNGC	5 cut(s)	298, 870, 1551, 1784, 2165
CaiI	CAGNNNCTG	4 cut(s)	1576, 1930, 2233, 2348
CciI	TCATGA	1 cut(s)	1935
CfoI	GCGC	3 cut(s)	494, 1066, 1912
Cfr13I	GGNCC	7 cut(s)	164, 218, 275, 1682, 2057, 2285, 2384
Cfr42I	CCGCGG	1 cut(s)	473
ClaI	ATCGAT	2 cut(s)	1200, 1656
CseI	GACGC	2 cut(s)	878, 1392
Csp6I	GTAC	3 cut(s)	263, 1157, 1464
CviQI	GTAC	3 cut(s)	263, 1157, 1464
DdeI	CTNAG	6 cut(s)	81, 417, 1017, 1497, 1891, 2150
DpnI	GATC	8 cut(s)	376, 573, 1178, 1483, 1506, 1655, 2225, 2565
DpnII	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
DraI	TTTAAA	1 cut(s)	1353
EaeI	YGGCCR	2 cut(s)	520, 1866
Eam1104I	CTCTTC	7 cut(s)	130, 400, 1126, 1386, 1977, 2283, 2440
EarI	CTCTTC	7 cut(s)	130, 400, 1126, 1386, 1977, 2283, 2440
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	4 cut(s)	64, 537, 688, 2194
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	2 cut(s)	616, 1623
Eco47I	GGWCC	5 cut(s)	164, 218, 275, 2057, 2285
Eco47III	AGCGCT	2 cut(s)	493, 1911
Eco53kI	GAGCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	2421
Eco72I	CACGTG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	2031
EcoRI	GAATTC	4 cut(s)	412, 430, 1954, 2534
EcoRII	CCWGG	3 cut(s)	139, 553, 1080
EcoRV	GATATC	2 cut(s)	616, 1623
EcoT14I	CCWWGG	4 cut(s)	64, 537, 688, 2194
EcoT22I	ATGCAT	2 cut(s)	1099, 2461
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	4 cut(s)	64, 537, 688, 2194
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 1383, 1415
FaqI	GGGAC	7 cut(s)	191, 261, 496, 496, 2070, 2079, 2280
FauI	CCCGC	1 cut(s)	477
FauNDI	CATATG	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	1293
FokI	GGATG	6 cut(s)	83, 401, 484, 578, 1106, 1812
FriOI	GRGCYC	1 cut(s)	110
FspBI	CTAG	4 cut(s)	489, 1164, 1217, 1766
GlaI	GCGC	3 cut(s)	493, 1065, 1911
GsaI	CCCAGC	1 cut(s)	1542
GsuI	CTGGAG	2 cut(s)	42, 1718
HaeII	RGCGCY	2 cut(s)	495, 1913
HaeIII	GGCC	5 cut(s)	522, 1683, 1868, 2207, 2385
HapII	CCGG	8 cut(s)	167, 372, 1666, 1830, 2054, 2076, 2204, 2283
HgaI	GACGC	2 cut(s)	878, 1392
HhaI	GCGC	3 cut(s)	494, 1066, 1912
Hin1I	GRCGYC	1 cut(s)	1384
Hin6I	GCGC	3 cut(s)	492, 1064, 1910
HinP1I	GCGC	3 cut(s)	492, 1064, 1910
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	7 cut(s)	311, 674, 697, 718, 1194, 1927, 2432
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	8 cut(s)	167, 372, 1666, 1830, 2054, 2076, 2204, 2283
HphI	GGTGA	1 cut(s)	2016
Hpy166II	GTNNAC	4 cut(s)	94, 1294, 1379, 1636
Hpy188I	TCNGA	6 cut(s)	1486, 1533, 1627, 1845, 2124, 2469
Hpy8I	GTNNAC	4 cut(s)	94, 1294, 1379, 1636
Hpy99I	CGWCG	2 cut(s)	355, 1386
HpyAV	CCTTC	5 cut(s)	18, 542, 1693, 2504, 2587
HpyCH4III	ACNGT	5 cut(s)	609, 705, 2261, 2368, 2408
HpyCH4IV	ACGT	2 cut(s)	509, 547
HpyF3I	CTNAG	6 cut(s)	81, 417, 1017, 1497, 1891, 2150
HpySE526I	ACGT	2 cut(s)	509, 547
Hsp92I	GRCGYC	1 cut(s)	1384
HspAI	GCGC	3 cut(s)	492, 1064, 1910
Kpn2I	TCCGGA	1 cut(s)	371
KspAI	GTTAAC	1 cut(s)	94
KspI	CCGCGG	1 cut(s)	473
Kzo9I	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
LguI	GCTCTTC	2 cut(s)	400, 1386
LmnI	GCTCC	6 cut(s)	542, 1423, 1737, 1759, 1877, 2395
MaeI	CTAG	4 cut(s)	489, 1164, 1217, 1766
MaeII	ACGT	2 cut(s)	509, 547
MalI	GATC	8 cut(s)	376, 573, 1178, 1483, 1506, 1655, 2225, 2565
MboI	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
MfeI	CAATTG	2 cut(s)	782, 1686
MflI	RGATCY	3 cut(s)	571, 1481, 1504
MhlI	GDGCHC	5 cut(s)	110, 547, 916, 1381, 2476
MlsI	TGGCCA	2 cut(s)	522, 1868
MluNI	TGGCCA	2 cut(s)	522, 1868
MlyI	GAGTC	3 cut(s)	320, 1203, 2426
MmeI	TCCRAC	3 cut(s)	591, 2031, 2387
Mox20I	TGGCCA	2 cut(s)	522, 1868
Mph1103I	ATGCAT	2 cut(s)	1099, 2461
MroI	TCCGGA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	1395
MscI	TGGCCA	2 cut(s)	522, 1868
MseI	TTAA	8 cut(s)	29, 93, 197, 882, 1170, 1352, 2048, 2556
MslI	CAYNNNNRTG	3 cut(s)	1102, 1453, 1719
Msp20I	TGGCCA	2 cut(s)	522, 1868
MspA1I	CMGCKG	7 cut(s)	472, 946, 959, 1538, 2134, 2143, 2345
MspI	CCGG	8 cut(s)	167, 372, 1666, 1830, 2054, 2076, 2204, 2283
MspR9I	CCNGG	9 cut(s)	141, 555, 1082, 1667, 1830, 2055, 2076, 2204, 2283
MunI	CAATTG	2 cut(s)	782, 1686
Mva1269I	GAATGC	2 cut(s)	1726, 2459
MvaI	CCWGG	3 cut(s)	141, 555, 1082
MvnI	CGCG	2 cut(s)	472, 1317
NciI	CCSGG	6 cut(s)	1667, 1830, 2055, 2076, 2204, 2283
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
NlaIV	GGNNCC	4 cut(s)	6, 165, 277, 2058
NmuCI	GTSAC	6 cut(s)	244, 991, 1106, 1572, 2022, 2145
NruI	TCGCGA	1 cut(s)	1317
NsiI	ATGCAT	2 cut(s)	1099, 2461
NspI	RCATGY	3 cut(s)	370, 1718, 1786
OliI	CACNNNNGTG	1 cut(s)	1453
PaeI	GCATGC	1 cut(s)	1786
PagI	TCATGA	1 cut(s)	1935
PaqCI	CACCTGC	2 cut(s)	634, 2432
PciSI	GCTCTTC	2 cut(s)	400, 1386
PctI	GAATGC	2 cut(s)	1726, 2459
PdmI	GAANNNNTTC	1 cut(s)	1395
PfeI	GAWTC	4 cut(s)	674, 697, 718, 1927
PflMI	CCANNNNNTGG	3 cut(s)	227, 899, 1864
PfoI	TCCNGGA	4 cut(s)	139, 553, 1828, 2281
PleI	GAGTC	3 cut(s)	319, 1202, 2426
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	3 cut(s)	319, 1202, 2426
Ppu21I	YACGTR	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	882
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	3 cut(s)	139, 553, 1080
PspCI	CACGTG	1 cut(s)	548
PspFI	CCCAGC	1 cut(s)	1538
PspGI	CCWGG	3 cut(s)	139, 553, 1080
PspN4I	GGNNCC	4 cut(s)	6, 165, 277, 2058
PspPI	GGNCC	7 cut(s)	164, 218, 275, 1682, 2057, 2285, 2384
PstI	CTGCAG	2 cut(s)	2139, 2241
PstNI	CAGNNNCTG	4 cut(s)	1576, 1930, 2233, 2348
PsuI	RGATCY	3 cut(s)	571, 1481, 1504
PvuII	CAGCTG	3 cut(s)	959, 1538, 2134
RruI	TCGCGA	1 cut(s)	1317
RsaI	GTAC	3 cut(s)	264, 1158, 1465
RsaNI	GTAC	3 cut(s)	263, 1157, 1464
RseI	CAYNNNNRTG	3 cut(s)	1102, 1453, 1719
SacI	GAGCTC	1 cut(s)	110
SacII	CCGCGG	1 cut(s)	473
SapI	GCTCTTC	2 cut(s)	400, 1386
SaqAI	TTAA	8 cut(s)	29, 93, 197, 882, 1170, 1352, 2048, 2556
Sau3AI	GATC	8 cut(s)	374, 571, 1176, 1481, 1504, 1653, 2223, 2563
Sau96I	GGNCC	7 cut(s)	164, 218, 275, 1682, 2057, 2285, 2384
ScaI	AGTACT	1 cut(s)	1158
SchI	GAGTC	3 cut(s)	320, 1203, 2426
ScrFI	CCNGG	9 cut(s)	141, 555, 1082, 1667, 1830, 2055, 2076, 2204, 2283
SduI	GDGCHC	5 cut(s)	110, 547, 916, 1381, 2476
SfcI	CTRYAG	4 cut(s)	87, 399, 2135, 2237
Sfr303I	CCGCGG	1 cut(s)	473
SgrBI	CCGCGG	1 cut(s)	473
SinI	GGWCC	5 cut(s)	164, 218, 275, 2057, 2285
SmiMI	CAYNNNNRTG	3 cut(s)	1102, 1453, 1719
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SphI	GCATGC	1 cut(s)	1786
SsiI	CCGC	9 cut(s)	470, 472, 946, 1543, 2129, 2143, 2183, 2213, 2345
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	4 cut(s)	489, 1164, 1217, 1766
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	9 cut(s)	139, 553, 1080, 1665, 1828, 2053, 2074, 2202, 2281
StyI	CCWWGG	4 cut(s)	64, 537, 688, 2194
TaaI	ACNGT	5 cut(s)	609, 705, 2261, 2368, 2408
TaiI	ACGT	2 cut(s)	512, 550
TaqI	TCGA	7 cut(s)	44, 353, 1140, 1200, 1656, 1711, 2489
TatI	WGTACW	2 cut(s)	262, 1156
TauI	GCSGC	5 cut(s)	475, 949, 1546, 2215, 2348
TfiI	GAWTC	4 cut(s)	674, 697, 718, 1927
Tru1I	TTAA	8 cut(s)	29, 93, 197, 882, 1170, 1352, 2048, 2556
Tru9I	TTAA	8 cut(s)	29, 93, 197, 882, 1170, 1352, 2048, 2556
TscAI	CASTG	7 cut(s)	208, 1109, 1195, 1581, 1809, 2086, 2266
TseFI	GTSAC	6 cut(s)	244, 991, 1106, 1572, 2022, 2145
Tsp45I	GTSAC	6 cut(s)	244, 991, 1106, 1572, 2022, 2145
TspDTI	ATGAA	7 cut(s)	30, 197, 1404, 1658, 1862, 1967, 2486
TspGWI	ACGGA	1 cut(s)	709
TspRI	CASTG	7 cut(s)	208, 1109, 1195, 1581, 1809, 2086, 2266
Van91I	CCANNNNNTGG	3 cut(s)	227, 899, 1864
VneI	GTGCAC	1 cut(s)	1377
VpaK11BI	GGWCC	5 cut(s)	164, 218, 275, 2057, 2285
VspI	ATTAAT	1 cut(s)	882
XagI	CCTNNNNNAGG	1 cut(s)	2031
XbaI	TCTAGA	1 cut(s)	1216
XceI	RCATGY	3 cut(s)	370, 1718, 1786
XmiI	GTMKAC	1 cut(s)	1293
XmnI	GAANNNNTTC	1 cut(s)	1395
XspI	CTAG	4 cut(s)	489, 1164, 1217, 1766
ZrmI	AGTACT	1 cut(s)	1158
Zsp2I	ATGCAT	2 cut(s)	1099, 2461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.