Rorug01G0398100

transcriptional co-repressor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
50674065 .. 50677039
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0398100.1

Sequence Viewer

Length: 1029 bp
ATGGCTTCCCATACTCCCAATCTGGAGTGCCGGATGTACGAGGCGCGGTACCCGGAGGTGGACATGGCGGTGATGATTCAGGTGAAGAACATCGCCGACATGGGTGCGTACGTCTCACTCCTCGAGTACAACAACATCGAGGGCATGATTCTGTTCTCGGAGCTCTCCCGCCGTCGGATTCGGAGTGTCAGCAGCCTCATCAAGGTCGGCCGCATCGAGCCCGTCATGGTTCTCAGGGTCGACAAGGAGAAGGGCTACATCGATTTGAGCAAGAGGAGGGTTTCCGAGGAGGATATTGCCACCTGTGAGGAGAGGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGACATGTCGCTGAGACTCTCGGCATCGATTTGGAGGAGTTGTACGTCAATATTGGCTGGCCGTTGTACCGGAAGTATGGTCATGCTTTTGAGGCTTTTAAAGTAATTGTCACTGATCCTGATACAGTTCTCAATGCCCTTACATGTGAGGTGAAAGAGACCGGCCCTGATGGACAGGAGGTTACTAAGGTTGTCCCTGCTGTGTCAGAGGAAGTGAAAGACTCTCTGGTAAAGAACATCAGGAGAAGAATGACACCACAACCATTGAAGATCCGTGCTGATATTGAAATGAAGTGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGATGCCATGCGGAAAGCAGAAGCTGCGGGCAACAATGACTGTCCTGTGAAGATTAAGTTGGTTGCTCCTCCACTCTATGTTCTTACCACACAGACTCTTGATAAGGAACAAGGTATAACAGTTCTAGGCAATGCAATTGTAGCCTGCACAAAAGCAATAGAGCATCACAAGGGGAAACTATTGGTGAAGGAAGCACCAAGAGTGGTGAGTGAAAAGGAAGATAAATTGCTGCAAGAGCACATGAGTAAGCTCCGCCAGGAGAATGAGGAGGTTGGGGGTGATACAGGCAGTGAAGATGAAGAAGACACTGGAATGGGAGAAGTTGACGTGGAGAACGGAGGCCATGCATTGTAG

Protein Analysis

342

Amino Acids

38.46

Weight (kDa)

5.54

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 18 - 92 5e-13 S1 RNA binding domain
EIF_2_alpha PF07541 130 - 260 1.2e-34 Eukaryotic translation initiation factor 2 alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 46
AciI CCGC 7 cut(s) 46, 68, 169, 211, 685, 701, 928
AclWI GGATC 2 cut(s) 458, 613
AcoI YGGCCR 2 cut(s) 208, 407
AfaI GTAC 7 cut(s) 38, 50, 110, 128, 317, 392, 416
AfiI CCNNNNNNNGG 3 cut(s) 58, 174, 202
AflIII ACRYGT 2 cut(s) 352, 491
AgsI TTSAA 2 cut(s) 616, 635
AjiI CACGTC 1 cut(s) 1003
AjnI CCWGG 1 cut(s) 930
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AluBI AGCT 4 cut(s) 163, 331, 698, 925
AluI AGCT 4 cut(s) 163, 331, 698, 925
Alw21I GWGCWC 2 cut(s) 165, 915
Alw26I GTCTC 3 cut(s) 118, 356, 500
AlwI GGATC 2 cut(s) 458, 613
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 208, 407, 511, 1015
ApeKI GCWGC 3 cut(s) 192, 698, 904
Asp700I GAANNNNTTC 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 6 cut(s) 82, 94, 511, 871, 892, 965
AvaI CYCGRG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 2 cut(s) 165, 222
BbsI GAAGAC 1 cut(s) 984
Bbv12I GWGCWC 2 cut(s) 165, 915
BbvI GCAGC 3 cut(s) 204, 685, 891
BccI CCATC 3 cut(s) 350, 512, 650
BceAI ACGGC 2 cut(s) 156, 394
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 932
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 3 cut(s) 118, 356, 500
BfaI CTAG 1 cut(s) 800
BisI GCNGC 4 cut(s) 193, 211, 699, 905
BlsI GCNGC 4 cut(s) 194, 212, 700, 906
Bme1390I CCNGG 2 cut(s) 53, 932
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 1003
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 53, 932
BmsI GCATC 4 cut(s) 222, 381, 667, 847
BpiI GAAGAC 1 cut(s) 984
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 53
Bsa29I ATCGAT 2 cut(s) 261, 375
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 174, 202
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 2 cut(s) 649, 988
Bse3DI GCAATG 1 cut(s) 811
BseBI CCWGG 1 cut(s) 932
BseCI ATCGAT 2 cut(s) 261, 375
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 39, 682
BseLI CCNNNNNNNGG 3 cut(s) 58, 174, 202
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 2 cut(s) 247, 351
BseNI ACTGG 2 cut(s) 649, 988
BseRI GAGGAG 7 cut(s) 110, 289, 302, 323, 398, 732, 956
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 3 cut(s) 204, 685, 891
BsgI GTGCAG 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 210, 409, 513, 1017
BshNI GGYRCC 1 cut(s) 48
BshVI ATCGAT 2 cut(s) 261, 375
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 165, 915
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 31, 53, 418, 510
BsiWI CGTACG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 3 cut(s) 58, 174, 202
BsmAI GTCTC 3 cut(s) 118, 356, 500
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 4 cut(s) 210, 409, 513, 1017
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 165, 222, 915
Bsp143I GATC 2 cut(s) 463, 618
BspACI CCGC 7 cut(s) 46, 68, 169, 211, 685, 701, 928
BspANI GGCC 4 cut(s) 210, 409, 513, 1017
BspCNI CTCAG 2 cut(s) 246, 352
BspDI ATCGAT 2 cut(s) 261, 375
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 2 cut(s) 458, 613
BspT107I GGYRCC 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 811
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 2 cut(s) 649, 988
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 463, 618
Bst2UI CCWGG 1 cut(s) 932
Bst4CI ACNGT 3 cut(s) 475, 716, 796
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 4 cut(s) 329, 407, 703, 820
BstDEI CTNAG 3 cut(s) 233, 360, 534
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 39, 682
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 466, 621
BstMAI GTCTC 3 cut(s) 118, 356, 500
BstMBI GATC 2 cut(s) 463, 618
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 4 cut(s) 440, 698, 815, 910
BstNI CCWGG 1 cut(s) 932
BstNSI RCATGY 2 cut(s) 356, 495
BstSCI CCNGG 2 cut(s) 51, 930
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 204, 685, 891
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 618
BstZI CGGCCG 1 cut(s) 208
Bsu15I ATCGAT 2 cut(s) 261, 375
BsuRI GGCC 4 cut(s) 210, 409, 513, 1017
BsuTUI ATCGAT 2 cut(s) 261, 375
BtgZI GCGATG 1 cut(s) 76
BtrI CACGTC 1 cut(s) 1003
BtsCI GGATG 2 cut(s) 39, 682
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 3 cut(s) 459, 970, 981
Cac8I GCNNGC 4 cut(s) 329, 407, 703, 820
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 512
ClaI ATCGAT 2 cut(s) 261, 375
Csp6I GTAC 7 cut(s) 37, 49, 109, 127, 316, 391, 415
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviQI GTAC 7 cut(s) 37, 49, 109, 127, 316, 391, 415
DdeI CTNAG 3 cut(s) 233, 360, 534
DpnI GATC 2 cut(s) 465, 620
DpnII GATC 2 cut(s) 463, 618
DraI TTTAAA 1 cut(s) 448
EaeI YGGCCR 2 cut(s) 208, 407
EagI CGGCCG 1 cut(s) 208
EciI GGCGGA 1 cut(s) 917
Ecl136II GAGCTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 165, 222
Eco31I GGTCTC 1 cut(s) 500
Eco52I CGGCCG 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 930
EcoT22I ATGCAT 1 cut(s) 1024
EcoT38I GRGCYC 2 cut(s) 165, 222
Esp3I CGTCTC 1 cut(s) 118
FaqI GGGAC 1 cut(s) 527
FauI CCCGC 2 cut(s) 176, 694
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 193, 211, 699, 905
FokI GGATG 2 cut(s) 46, 689
FriOI GRGCYC 2 cut(s) 165, 222
Fsp4HI GCNGC 4 cut(s) 193, 211, 699, 905
FspBI CTAG 1 cut(s) 800
GlaI GCGC 1 cut(s) 45
GluI GCNGC 4 cut(s) 193, 211, 699, 905
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 4 cut(s) 210, 409, 513, 1017
HapII CCGG 4 cut(s) 31, 53, 418, 510
HhaI GCGC 1 cut(s) 46
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 2 cut(s) 241, 1000
HindII GTYRAC 2 cut(s) 241, 1000
HinfI GANTC 6 cut(s) 76, 148, 178, 364, 569, 769
HpaII CCGG 4 cut(s) 31, 53, 418, 510
HphI GGTGA 6 cut(s) 82, 94, 511, 871, 892, 965
Hpy166II GTNNAC 4 cut(s) 61, 241, 337, 1000
Hpy188I TCNGA 5 cut(s) 160, 177, 183, 286, 556
Hpy188III TCNNGA 4 cut(s) 23, 467, 589, 773
Hpy8I GTNNAC 4 cut(s) 61, 241, 337, 1000
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 244, 856
HpyCH4III ACNGT 3 cut(s) 475, 716, 796
HpyCH4IV ACGT 3 cut(s) 111, 393, 1002
HpyCH4V TGCA 4 cut(s) 809, 822, 907, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 698, 815, 910
HpyF3I CTNAG 3 cut(s) 233, 360, 534
HpySE526I ACGT 3 cut(s) 111, 393, 1002
HspAI GCGC 1 cut(s) 44
KpnI GGTACC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 463, 618
LmnI GCTCC 3 cut(s) 160, 745, 930
Lsp1109I GCAGC 3 cut(s) 204, 685, 891
LweI GCATC 4 cut(s) 222, 381, 667, 847
MaeI CTAG 1 cut(s) 800
MaeII ACGT 3 cut(s) 111, 393, 1002
MaeIII GTNAC 2 cut(s) 457, 529
MalI GATC 2 cut(s) 465, 620
MboI GATC 2 cut(s) 463, 618
MboII GAAGA 9 cut(s) 97, 606, 628, 656, 736, 905, 980, 986, 989
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 3 cut(s) 165, 222, 915
MluCI AATT 3 cut(s) 453, 810, 899
MlyI GAGTC 3 cut(s) 358, 563, 763
MmeI TCCRAC 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 3 cut(s) 447, 672, 729
MslI CAYNNNNRTG 2 cut(s) 68, 986
MspI CCGG 4 cut(s) 31, 53, 418, 510
MspR9I CCNGG 2 cut(s) 53, 932
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 1 cut(s) 932
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 440, 698, 815, 910
NciI CCSGG 1 cut(s) 53
NdeII GATC 2 cut(s) 463, 618
NlaIV GGNNCC 1 cut(s) 50
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 457
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 2 cut(s) 356, 495
PaeR7I CTCGAG 1 cut(s) 122
PciI ACATGT 2 cut(s) 352, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 3 cut(s) 76, 148, 178
Pfl23II CGTACG 1 cut(s) 108
PkrI GCNGC 4 cut(s) 194, 212, 700, 906
PleI GAGTC 3 cut(s) 358, 563, 763
PpsI GAGTC 3 cut(s) 358, 563, 763
PscI ACATGT 2 cut(s) 352, 491
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 930
PspGI CCWGG 1 cut(s) 930
PspLI CGTACG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 512
PspXI VCTCGAGB 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 7 cut(s) 38, 50, 110, 128, 317, 392, 416
RsaNI GTAC 7 cut(s) 37, 49, 109, 127, 316, 391, 415
RseI CAYNNNNRTG 2 cut(s) 68, 986
SacI GAGCTC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 447, 672, 729
SatI GCNGC 4 cut(s) 193, 211, 699, 905
Sau3AI GATC 2 cut(s) 463, 618
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 3 cut(s) 358, 563, 763
ScrFI CCNGG 2 cut(s) 53, 932
SduI GDGCHC 3 cut(s) 165, 222, 915
SfaNI GCATC 4 cut(s) 222, 381, 667, 847
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 68, 986
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 3 cut(s) 453, 810, 899
SsiI CCGC 7 cut(s) 46, 68, 169, 211, 685, 701, 928
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 800
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 51, 930
TaaI ACNGT 3 cut(s) 475, 716, 796
TaiI ACGT 3 cut(s) 114, 396, 1005
TaqI TCGA 6 cut(s) 123, 138, 216, 240, 261, 375
TasI AATT 3 cut(s) 453, 810, 899
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 3 cut(s) 76, 148, 178
Tru1I TTAA 3 cut(s) 447, 672, 729
Tru9I TTAA 3 cut(s) 447, 672, 729
TscAI CASTG 3 cut(s) 466, 970, 988
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 3 cut(s) 192, 698, 904
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 653, 987
TspGWI ACGGA 2 cut(s) 611, 1026
TspRI CASTG 3 cut(s) 466, 970, 988
XagI CCTNNNNNAGG 1 cut(s) 200
XceI RCATGY 2 cut(s) 356, 495
XhoI CTCGAG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 1 cut(s) 800
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.