Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Forward (+)

11565200 .. 11568815

Gene Structure 3616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3342 bp

ATGCACCTCTACAGTCTCACTCTCCAGCGCGCGACGGGCGTAGTCTGCGCCATCAACGGCAACTTCTCCGGCGAAAAGACCCCAGAAATCGCCGTCGCCCGAGGCAAAGTCCTCGACCTTCTCCGCCCCGACGCCGCCGGTAAGATCCAGACTCTTCTCTCCGTTGAAATTTTCGGCGCCATTAGGTCTTTAGCTCCGTTTAGGCTACCCGGCTCCCGAAAAGACTACATTGTCGTCGGCTCCGATTCCGGCCGGATCGTAATTCTAGAATATAACAAAGAGAACAATGTATTTGATAAAATTCACCAAGAGACCTTCGGAAAATCCGGTTCTCGCCGGATTGTTCCGGGTCAGTACTTGGCGGTTGACCCGAAAGGGAGGGCTGTTATGGTTGGAGCCTGTGAGAAACAGAAGCTAGTGTTGACTATATCGTCGCCGTTGGGGGCACATAAGTCTCATGCTATAGTGTTTTCGATTTGTGGGGTTGATTGTGGGTTTGATAATCCTGTATTTGCTGCCATTGAGCTGGATTATTCCGAGTTGGATCAGGATTCTAGTGCGAAGGTGGCTCGGAAGTATGTGACTTTCTATGAGCTTGATTTGGGGCTTAACCATGTGTGTAGGAAGTGGTCTGATCAGGTTGATAATGGGGCGAATTTGCTGGTTATGGTGCCGGGAGGTGCGGATGGGCCTAGCGGAGTGTTGACTGAGTATGGAGATATATTTAAGGTGACTTTGGAGCATAGTGATGATGTTGTCTCGGAATTGAAGATCAAGTACTTTGATACAATCCCAGTCACAACTTCAATGTGTGTGTTGAATTCGCAGCTTTTGTTTGCTGCTTCGGAGTTTGGGAATCACGCTTTGTATCAGTTCCAGGCAATAGGCGAAGATCCTGATGTCGAGTCCTCCTCAGCTTTGTTGGTGGAAACTGAAGAGGGTTTCCAGCCATTGTGTTTCCAACCTAGAAAACTTAAGAACCTTGTTGGGATTGATCAGGTTGAGAGCTTGATGCCGATAACGGACATGAAGGTCTCTAATCTGTTTGAAGAAGAAACACCTCAAATATTTACGCTTTGCGGCCAGGGTCCTCGTTCATCTCTCAGGATACTAAGACCTGGTTTGGCTATCAGTGAGATGGCTGTGTCAGAGCTTCCTGGCGTACCGAGTGCTGTCTGGACAGTGAAAAAGAAGGTGGCTGATGAGTTTGATGCATACATTGTGGTGTCATTTGCAAACGCTACTCTTGTGCTTTCAATTGGTGAGACAATCGAAGAAGTTATTGACAGTGGTTTTCTTGATACTGCCTCTTCACTTGCCGTGTCTTTGATAGGTGATGATGCTCTCATGCAAGTTCACCCAAATGGCATTAGGCATATTAGGGAAGGTGGACCTATCAATGAATGGAGAACTCCTGGAAAGAGAACGATTATAATGGTTGGCTCTAATAGATTTCAGGTGGTCATTGCTTTGAGTGGAGGAGAACTTATATACTTTGAGGTTGATATGACTGGTCAACTGGTGGAGGTTGAGAAGCATGAATTGTCTGGAGATGTAGCTTGTCTGGACATTGCCCCAGTACCTGAAGGGAGACAAGGATCTCGTTTCCTTGCAGTTGGTTCATATGACAACACGATTCGTATTTTGTCATTGGATCCTGATGACTGTATGCAGATTCTGAGTGTTCAAAGTGTCTCTTCAATTCCAGAATCTCTCCTCTTTCTTGAGGCTCGGGCATCAGTTAGTGGTGAGGATGGTGCCAATCATCCTGCCAACCTTTTCCTTTATGCCGGTCTACGAACTGGGATTTTGTTCAGAACAGTGGTGGATACGGTGACAGGTCAGCTTTCTGATTCCCATTCCCGATTCTTAGGACTAAGAGCTCCTAAGCTATTTTCTATTAATATAAGAGGCAGGCATGCCATGCTTTGTTTGTCAAGTCGGCCCTGGCTTGGTGTAGTTGCTGTTGCTGGCAGTTCTTTGAGGGTTTTTACTATCGAAAGATTGGGAGAAACATTTAATGAAACTTTGATTCCTCTGAGGTACACCCCTAGAAAGTTTGTGGTTCAAGTGAAACGAAAGCTTTTGGTAATTATTGAAAGTGATCAAGGAGCATTCACAGCAGAAGAGCGTAAAACTGCAAAAAGGAAAACTAGGAAGGATGTTGATGAAGATTTCTCTCCACCAAGGAAGCGAAGGAACAGTAGTAGCAATGGTGGTGCAGATCTTTGTCCACCAAAGGAGTGCTTTGACGCTGCGGAAATAGGTGAAAAAAGAAATGGTAATGTGGAGCAGATGGAAAATGATGATAATGAGGATGATCCCCTCTCTGATGAGCACTATGGCTATCCCAAGGCAGAGTCTGACAAATGGGTTTCTTGCATTAGAGTTCTTGACCCAAAGACAGCATCTACAACTTGTTTGCTGAAGCTCGATAACGAAGCTGCAATCAGTGTATGTACAGTGAATTTTCATGATAACGCCGGCCTGGTTGGGGCAGCTCCTCCGAAGGAGTATGGTACGCTTTTGGCTGTTGGAACCGCAAAGGGACTTCAATTTTGGCCCAAGAATAGTATAACTGGAGGATTTATTCATATATATCGATTTCTTGATGATGGAAAGTCCCTTGAACTTTTGCACAAAACAGAAGTGGATGGTGTTCCTCTTGCTTTATGTCAGTCTCAGGGAACGTTACTAGCAGGGACAGGATCAGTGCTCAGACTATATGATTTGGGGAGAAAAAGATTGCTTAGGAAATGTGAGAATAAGCTGTTTCCCAACAATATTGTATCCATTCACACCTATCGTGATCGAATATATGTAGGTGACATTCAAGATTCATTCCACTACTGCAAGTATAGGCAGGATGAGAATCAGCTGTACATATTTGCTGATGATCGTGTTCCAAGATGGCTGACAGCATCGTTCCATATTGATTTTGACACGATAGCAGGTGCGGACAAGTTTGGGAATGTGTACTTTGTGCGGTTACCACAGGATGTTTCAGATGGGATAGAAGAAGATCCAACAGGTGGGAGGATAAAATGGAAGCAGGGGAAGTTGAATGGTGCTCCAAACAAAGTGGAGGAGATCGTGCAGTTTCATGTTGGCGATGTAGTCAGCTGCTTGCAGAAGGCATCTCTCATTCCAGGTGGTGGTGAGTGCATCATTTACGGGACAGTGATGGGTAGCTTGGGTACATTGTTTGCATTCACTTCCCGTGATGACGTTGTCTTCTTTTCTCACCTGGAGATGTATATGAGGCAGGAACATCCACCCTTGTGTGGGAGAGATCACGTGGCTTATAGATCAGCTTATTTCCTAGTTAAAGGATGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1114

Amino Acids

122.46

Weight (kDa)

5.51

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	14 - 235	1.7e-62	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_1st	PF10433	235 - 302	2.3e-18	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	377 - 666	3.3e-70	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	793 - 1107	1e-80	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1433
AarI	CACCTGC	1 cut(s)	2942
AasI	GACNNNNNNGTC	3 cut(s)	230, 430, 1031
Acc36I	ACCTGC	1 cut(s)	2942
AccB1I	GGYRCC	3 cut(s)	176, 670, 1757
AccB7I	CCANNNNNTGG	2 cut(s)	3032, 3155
AccI	GTMKAC	1 cut(s)	1795
AccII	CGCG	2 cut(s)	30, 32
AclI	AACGTT	1 cut(s)	2690
AcoI	YGGCCR	2 cut(s)	250, 1081
AcsI	RAATTY	5 cut(s)	168, 300, 655, 820, 2467
AcuI	CTGAAG	3 cut(s)	954, 1605, 2447
AcvI	CACGTG	1 cut(s)	3298
AcyI	GRCGYC	2 cut(s)	132, 177
AfiI	CCNNNNNNNGG	6 cut(s)	1952, 2494, 3032, 3155, 3284, 3285
AflII	CTTAAG	1 cut(s)	974
AjnI	CCWGG	9 cut(s)	876, 1083, 1117, 1156, 1414, 1946, 2487, 3148, 3246
AleI	CACNNNNGTG	1 cut(s)	3280
Alw21I	GWGCWC	4 cut(s)	1885, 2340, 2718, 3073
Alw26I	GTCTC	9 cut(s)	20, 305, 459, 763, 1039, 1259, 1585, 1699, 2685
AlwNI	CAGNNNCTG	3 cut(s)	1583, 1678, 2363
Ama87I	CYCGRG	2 cut(s)	99, 1731
AoxI	GGCC	6 cut(s)	250, 689, 1081, 1943, 2485, 2561
ApeKI	GCWGC	7 cut(s)	515, 826, 839, 2255, 2444, 2498, 3123
ApoI	RAATTY	5 cut(s)	168, 300, 655, 820, 2467
ArsI	GACNNNNNNTTYG	2 cut(s)	2541, 2573
AseI	ATTAAT	1 cut(s)	1902
AspLEI	GCGC	4 cut(s)	30, 32, 50, 179
AspS9I	GGNCC	5 cut(s)	689, 1088, 1391, 1944, 2562
AsuC2I	CCSGG	3 cut(s)	210, 348, 675
AvaI	CYCGRG	2 cut(s)	99, 1731
AvaII	GGWCC	2 cut(s)	1088, 1391
BaeGI	GKGCMC	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	1654
BanI	GGYRCC	3 cut(s)	176, 670, 1757
BanII	GRGCYC	1 cut(s)	1885
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
BbrPI	CACGTG	1 cut(s)	3298
BbsI	GAAGAC	1 cut(s)	3226
Bbv12I	GWGCWC	4 cut(s)	1885, 2340, 2718, 3073
BbvCI	CCTCAGC	1 cut(s)	913
BbvI	GCAGC	7 cut(s)	502, 826, 838, 2242, 2431, 2510, 3110
BceAI	ACGGC	4 cut(s)	73, 77, 421, 1304
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	9 cut(s)	878, 1085, 1119, 1158, 1416, 1948, 2489, 3150, 3248
BciVI	GTATCC	3 cut(s)	1101, 1822, 2800
BclI	TGATCA	3 cut(s)	634, 994, 2104
BcnI	CCSGG	3 cut(s)	210, 348, 675
BcoDI	GTCTC	9 cut(s)	20, 305, 459, 763, 1039, 1259, 1585, 1699, 2685
BfaI	CTAG	9 cut(s)	266, 416, 555, 693, 966, 2052, 2154, 2696, 3323
BfmI	CTRYAG	2 cut(s)	10, 462
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	974
BfuAI	ACCTGC	1 cut(s)	2942
BfuI	GTATCC	3 cut(s)	1101, 1822, 2800
BglII	AGATCT	1 cut(s)	2224
BisI	GCNGC	9 cut(s)	135, 516, 827, 840, 1081, 2256, 2445, 2499, 3124
BlsI	GCNGC	9 cut(s)	136, 517, 828, 841, 1082, 2257, 2446, 2500, 3125
BmcAI	AGTACT	2 cut(s)	356, 779
Bme18I	GGWCC	2 cut(s)	1088, 1391
BmeT110I	CYCGRG	2 cut(s)	99, 1731
BmgT120I	GGNCC	5 cut(s)	689, 1088, 1391, 1944, 2562
BmiI	GGNNCC	9 cut(s)	178, 214, 241, 397, 672, 1089, 1656, 1759, 2539
BmrI	ACTGGG	3 cut(s)	788, 1571, 1812
BmsI	GCATC	8 cut(s)	1002, 1201, 1330, 1745, 2417, 2930, 3146, 3174
BmuI	ACTGGG	3 cut(s)	788, 1571, 1812
BpiI	GAAGAC	1 cut(s)	3226
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
BpmI	CTGGAG	4 cut(s)	8, 1569, 2601, 3269
Bpu10I	CCTNAGC	3 cut(s)	913, 1887, 2750
BpuEI	CTTGAG	1 cut(s)	1745
BpuMI	CCSGG	3 cut(s)	210, 348, 675
Bsa29I	ATCGAT	1 cut(s)	2602
BsaAI	YACGTR	1 cut(s)	3298
BsaBI	GATNNNNATC	1 cut(s)	2871
BsaHI	GRCGYC	2 cut(s)	132, 177
BsaI	GGTCTC	2 cut(s)	305, 1039
BsaJI	CCNNGG	5 cut(s)	100, 1084, 1946, 2186, 2352
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	6 cut(s)	1952, 2494, 3032, 3155, 3284, 3285
Bse118I	RCCGGY	3 cut(s)	137, 1790, 2483
Bse1I	ACTGG	6 cut(s)	794, 1516, 1524, 1577, 1807, 2584
Bse3DI	GCAATG	3 cut(s)	1464, 1569, 2218
Bse8I	GATNNNNATC	1 cut(s)	2871
BseBI	CCWGG	9 cut(s)	878, 1085, 1119, 1158, 1416, 1948, 2489, 3150, 3248
BseCI	ATCGAT	1 cut(s)	2602
BseDI	CCNNGG	5 cut(s)	100, 1084, 1946, 2186, 2352
BseJI	GATNNNNATC	1 cut(s)	2871
BseLI	CCNNNNNNNGG	6 cut(s)	1952, 2494, 3032, 3155, 3284, 3285
BseMI	GCAATG	3 cut(s)	1464, 1569, 2218
BseMII	CTCAG	7 cut(s)	699, 927, 1117, 1670, 2030, 2696, 2731
BseNI	ACTGG	6 cut(s)	794, 1516, 1524, 1577, 1807, 2584
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	5 cut(s)	901, 1494, 1706, 2493, 3101
BseSI	GKGCMC	1 cut(s)	448
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	7 cut(s)	502, 826, 838, 2242, 2431, 2510, 3110
BsgI	GTGCAG	2 cut(s)	2241, 3116
Bsh1236I	CGCG	2 cut(s)	30, 32
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	6 cut(s)	252, 691, 1083, 1945, 2487, 2563
BshNI	GGYRCC	3 cut(s)	176, 670, 1757
BshVI	ATCGAT	1 cut(s)	2602
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	4 cut(s)	1885, 2340, 2718, 3073
BsiHKCI	CYCGRG	2 cut(s)	99, 1731
BslFI	GGGAC	4 cut(s)	2562, 2608, 2716, 3190
BslI	CCNNNNNNNGG	6 cut(s)	1952, 2494, 3032, 3155, 3284, 3285
BsmAI	GTCTC	9 cut(s)	20, 305, 459, 763, 1039, 1259, 1585, 1699, 2685
BsmFI	GGGAC	4 cut(s)	2562, 2608, 2716, 3190
BsmI	GAATGC	2 cut(s)	2114, 3209
BsnI	GGCC	6 cut(s)	252, 691, 1083, 1945, 2487, 2563
Bso31I	GGTCTC	2 cut(s)	305, 1039
BsoBI	CYCGRG	2 cut(s)	99, 1731
Bsp1286I	GDGCHC	5 cut(s)	448, 1885, 2340, 2718, 3073
Bsp1407I	TGTACA	2 cut(s)	2459, 2880
BspANI	GGCC	6 cut(s)	252, 691, 1083, 1945, 2487, 2563
BspCNI	CTCAG	7 cut(s)	700, 926, 1116, 1671, 2031, 2695, 2730
BspDI	ATCGAT	1 cut(s)	2602
BspFNI	CGCG	2 cut(s)	30, 32
BspHI	TCATGA	1 cut(s)	2473
BspLI	GGNNCC	9 cut(s)	178, 214, 241, 397, 672, 1089, 1656, 1759, 2539
BspMI	ACCTGC	1 cut(s)	2942
BspQI	GCTCTTC	1 cut(s)	2121
BspT107I	GGYRCC	3 cut(s)	176, 670, 1757
BspTI	CTTAAG	1 cut(s)	974
BspTNI	GGTCTC	2 cut(s)	305, 1039
BsrDI	GCAATG	3 cut(s)	1464, 1569, 2218
BsrFI	RCCGGY	3 cut(s)	137, 1790, 2483
BsrGI	TGTACA	2 cut(s)	2459, 2880
BsrI	ACTGG	6 cut(s)	794, 1516, 1524, 1577, 1807, 2584
BssAI	RCCGGY	3 cut(s)	137, 1790, 2483
BssECI	CCNNGG	5 cut(s)	100, 1084, 1946, 2186, 2352
BssHII	GCGCGC	1 cut(s)	28
BssNI	GRCGYC	2 cut(s)	132, 177
BssT1I	CCWWGG	2 cut(s)	2186, 2352
Bst2UI	CCWGG	9 cut(s)	878, 1085, 1119, 1158, 1416, 1948, 2489, 3150, 3248
Bst4CI	ACNGT	9 cut(s)	14, 1183, 1289, 1667, 1822, 1834, 2204, 2464, 3181
Bst6I	CTCTTC	5 cut(s)	159, 930, 1315, 1702, 2121
BstACI	GRCGYC	2 cut(s)	132, 177
BstAFI	CTTAAG	1 cut(s)	974
BstAPI	GCANNNNNTGC	1 cut(s)	1924
BstAUI	TGTACA	2 cut(s)	2459, 2880
BstBAI	YACGTR	1 cut(s)	3298
BstC8I	GCNNGC	6 cut(s)	30, 1916, 1920, 1972, 2485, 3128
BstEII	GGTNACC	1 cut(s)	2988
BstFNI	CGCG	2 cut(s)	30, 32
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	4 cut(s)	30, 32, 50, 179
BstMAI	GTCTC	9 cut(s)	20, 305, 459, 763, 1039, 1259, 1585, 1699, 2685
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 45, 566, 1924, 2120
BstNI	CCWGG	9 cut(s)	878, 1085, 1119, 1158, 1416, 1948, 2489, 3150, 3248
BstNSI	RCATGY	1 cut(s)	1922
BstPI	GGTNACC	1 cut(s)	2988
BstSFI	CTRYAG	2 cut(s)	10, 462
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	2 cut(s)	30, 32
BstV1I	GCAGC	7 cut(s)	502, 826, 838, 2242, 2431, 2510, 3110
BstV2I	GAAGAC	1 cut(s)	3226
BstX2I	RGATCY	6 cut(s)	144, 892, 1598, 1654, 2224, 3022
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	6 cut(s)	144, 892, 1598, 1654, 2224, 3022
BstZI	CGGCCG	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	2602
BsuI	GTATCC	3 cut(s)	1101, 1822, 2800
BsuRI	GGCC	6 cut(s)	252, 691, 1083, 1945, 2487, 2563
BsuTUI	ATCGAT	1 cut(s)	2602
BtgZI	GCGATG	1 cut(s)	3126
BtsIMutI	CAGTG	8 cut(s)	1138, 1188, 1294, 1827, 2458, 2469, 2718, 3186
BveI	ACCTGC	1 cut(s)	2942
Cac8I	GCNNGC	6 cut(s)	30, 1916, 1920, 1972, 2485, 3128
CaiI	CAGNNNCTG	3 cut(s)	1583, 1678, 2363
CciI	TCATGA	1 cut(s)	2473
CfoI	GCGC	4 cut(s)	30, 32, 50, 179
Cfr10I	RCCGGY	3 cut(s)	137, 1790, 2483
Cfr13I	GGNCC	5 cut(s)	689, 1088, 1391, 1944, 2562
ClaI	ATCGAT	1 cut(s)	2602
CseI	GACGC	2 cut(s)	140, 2261
CsiI	ACCWGGT	1 cut(s)	1117
CspCI	CAANNNNNGTGG	2 cut(s)	3063, 3098
CviAII	CATG	9 cut(s)	458, 614, 1027, 1348, 1538, 1919, 1924, 2474, 3104
DinI	GGCGCC	1 cut(s)	178
DrdI	GACNNNNNNGTC	3 cut(s)	230, 430, 1031
DseDI	GACNNNNNNGTC	3 cut(s)	230, 430, 1031
EaeI	YGGCCR	2 cut(s)	250, 1081
EagI	CGGCCG	1 cut(s)	250
Eam1104I	CTCTTC	5 cut(s)	159, 930, 1315, 1702, 2121
EarI	CTCTTC	5 cut(s)	159, 930, 1315, 1702, 2121
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	1883
EclXI	CGGCCG	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	2186, 2352
Eco24I	GRGCYC	1 cut(s)	1885
Eco31I	GGTCTC	2 cut(s)	305, 1039
Eco47I	GGWCC	2 cut(s)	1088, 1391
Eco52I	CGGCCG	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	1883
Eco57I	CTGAAG	3 cut(s)	954, 1605, 2447
Eco72I	CACGTG	1 cut(s)	3298
Eco88I	CYCGRG	2 cut(s)	99, 1731
Eco91I	GGTNACC	1 cut(s)	2988
EcoICRI	GAGCTC	1 cut(s)	1883
EcoO109I	RGGNCCY	1 cut(s)	1088
EcoO65I	GGTNACC	1 cut(s)	2988
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	9 cut(s)	876, 1083, 1117, 1156, 1414, 1946, 2487, 3148, 3246
EcoT14I	CCWWGG	2 cut(s)	2186, 2352
EcoT22I	ATGCAT	1 cut(s)	1216
EcoT38I	GRGCYC	1 cut(s)	1885
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	2186, 2352
FaeI	CATG	9 cut(s)	461, 617, 1030, 1351, 1541, 1922, 1927, 2477, 3107
FalI	AAGNNNNNCTT	4 cut(s)	1681, 1713, 2231, 2263
FaqI	GGGAC	4 cut(s)	2562, 2608, 2716, 3190
FatI	CATG	9 cut(s)	457, 613, 1026, 1347, 1537, 1918, 1923, 2473, 3103
FauNDI	CATATG	1 cut(s)	1624
FbaI	TGATCA	3 cut(s)	634, 994, 2104
FblI	GTMKAC	1 cut(s)	1795
Fnu4HI	GCNGC	9 cut(s)	135, 516, 827, 840, 1081, 2256, 2445, 2499, 3124
FokI	GGATG	9 cut(s)	698, 1752, 1766, 2174, 2330, 2666, 2879, 3011, 3258
FriOI	GRGCYC	1 cut(s)	1885
Fsp4HI	GCNGC	9 cut(s)	135, 516, 827, 840, 1081, 2256, 2445, 2499, 3124
FspBI	CTAG	9 cut(s)	266, 416, 555, 693, 966, 2052, 2154, 2696, 3323
GlaI	GCGC	4 cut(s)	29, 31, 49, 178
GluI	GCNGC	9 cut(s)	135, 516, 827, 840, 1081, 2256, 2445, 2499, 3124
GsuI	CTGGAG	4 cut(s)	8, 1569, 2601, 3269
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	6 cut(s)	252, 691, 1083, 1945, 2487, 2563
HgaI	GACGC	2 cut(s)	140, 2261
HhaI	GCGC	4 cut(s)	30, 32, 50, 179
Hin1I	GRCGYC	2 cut(s)	132, 177
Hin1II	CATG	9 cut(s)	461, 617, 1030, 1351, 1541, 1922, 1927, 2477, 3107
Hin6I	GCGC	4 cut(s)	28, 30, 48, 177
HinP1I	GCGC	4 cut(s)	28, 30, 48, 177
HincII	GTYRAC	4 cut(s)	367, 423, 705, 1517
HindII	GTYRAC	4 cut(s)	367, 423, 705, 1517
HindIII	AAGCTT	1 cut(s)	2081
Hpy99I	CGWCG	5 cut(s)	37, 98, 134, 239, 436
HpyCH4III	ACNGT	9 cut(s)	14, 1183, 1289, 1667, 1822, 1834, 2204, 2464, 3181
HpyCH4IV	ACGT	3 cut(s)	2690, 3228, 3297
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 45, 566, 1924, 2120
HpySE526I	ACGT	3 cut(s)	2690, 3228, 3297
Hsp92I	GRCGYC	2 cut(s)	132, 177
Hsp92II	CATG	9 cut(s)	461, 617, 1030, 1351, 1541, 1922, 1927, 2477, 3107
HspAI	GCGC	4 cut(s)	28, 30, 48, 177
KasI	GGCGCC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	2483
KroNI	GCCGGC	1 cut(s)	2485
Ksp22I	TGATCA	3 cut(s)	634, 994, 2104
LguI	GCTCTTC	1 cut(s)	2121
Lsp1109I	GCAGC	7 cut(s)	502, 826, 838, 2242, 2431, 2510, 3110
LweI	GCATC	8 cut(s)	1002, 1201, 1330, 1745, 2417, 2930, 3146, 3174
MabI	ACCWGGT	1 cut(s)	1117
MaeI	CTAG	9 cut(s)	266, 416, 555, 693, 966, 2052, 2154, 2696, 3323
MaeII	ACGT	3 cut(s)	2690, 3228, 3297
MaeIII	GTNAC	7 cut(s)	580, 730, 796, 1834, 2691, 2825, 2988
MfeI	CAATTG	1 cut(s)	1257
MflI	RGATCY	6 cut(s)	144, 892, 1598, 1654, 2224, 3022
MhlI	GDGCHC	5 cut(s)	448, 1885, 2340, 2718, 3073
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	3 cut(s)	145, 914, 2369
MmeI	TCCRAC	5 cut(s)	373, 522, 985, 2515, 3050
Mph1103I	ATGCAT	1 cut(s)	1216
MroNI	GCCGGC	1 cut(s)	2483
MseI	TTAA	6 cut(s)	609, 726, 975, 1902, 2019, 3327
MslI	CAYNNNNRTG	4 cut(s)	747, 1223, 1362, 3280
MspA1I	CMGCKG	2 cut(s)	2878, 3123
MspCI	CTTAAG	1 cut(s)	974
MunI	CAATTG	1 cut(s)	1257
Mva1269I	GAATGC	2 cut(s)	2114, 3209
MvaI	CCWGG	9 cut(s)	878, 1085, 1119, 1158, 1416, 1948, 2489, 3150, 3248
MvnI	CGCG	2 cut(s)	30, 32
MwoI	GCNNNNNNNGC	5 cut(s)	36, 45, 566, 1924, 2120
NaeI	GCCGGC	1 cut(s)	2485
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	3 cut(s)	210, 348, 675
NdeI	CATATG	1 cut(s)	1624
NgoMIV	GCCGGC	1 cut(s)	2483
NlaIII	CATG	9 cut(s)	461, 617, 1030, 1351, 1541, 1922, 1927, 2477, 3107
NlaIV	GGNNCC	9 cut(s)	178, 214, 241, 397, 672, 1089, 1656, 1759, 2539
NmuCI	GTSAC	5 cut(s)	580, 730, 796, 1834, 2825
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	1 cut(s)	1922
OliI	CACNNNNGTG	1 cut(s)	3280
PaeI	GCATGC	1 cut(s)	1922
PagI	TCATGA	1 cut(s)	2473
PaqCI	CACCTGC	1 cut(s)	2942
PauI	GCGCGC	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	2121
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	2114, 3209
PdiI	GCCGGC	1 cut(s)	2485
PflFI	GACNNNGTC	1 cut(s)	3230
PflMI	CCANNNNNTGG	2 cut(s)	3032, 3155
PfoI	TCCNGGA	1 cut(s)	1414
PkrI	GCNGC	9 cut(s)	136, 517, 828, 841, 1082, 2257, 2446, 2500, 3125
PleI	GAGTC	3 cut(s)	145, 913, 2368
PluTI	GGCGCC	1 cut(s)	180
PmaCI	CACGTG	1 cut(s)	3298
PmlI	CACGTG	1 cut(s)	3298
PpsI	GAGTC	3 cut(s)	145, 913, 2368
Ppu21I	YACGTR	1 cut(s)	3298
PpuMI	RGGWCCY	1 cut(s)	1088
PshBI	ATTAAT	1 cut(s)	1902
PsiI	TTATAA	1 cut(s)	1433
Psp124BI	GAGCTC	1 cut(s)	1885
Psp1406I	AACGTT	1 cut(s)	2690
Psp5II	RGGWCCY	1 cut(s)	1088
Psp6I	CCWGG	9 cut(s)	876, 1083, 1117, 1156, 1414, 1946, 2487, 3148, 3246
PspCI	CACGTG	1 cut(s)	3298
PspEI	GGTNACC	1 cut(s)	2988
PspGI	CCWGG	9 cut(s)	876, 1083, 1117, 1156, 1414, 1946, 2487, 3148, 3246
PspN4I	GGNNCC	9 cut(s)	178, 214, 241, 397, 672, 1089, 1656, 1759, 2539
PspPI	GGNCC	5 cut(s)	689, 1088, 1391, 1944, 2562
PspPPI	RGGWCCY	1 cut(s)	1088
PstNI	CAGNNNCTG	3 cut(s)	1583, 1678, 2363
PsuI	RGATCY	6 cut(s)	144, 892, 1598, 1654, 2224, 3022
PsyI	GACNNNGTC	1 cut(s)	3230
PteI	GCGCGC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	2878, 3123
RseI	CAYNNNNRTG	4 cut(s)	747, 1223, 1362, 3280
SacI	GAGCTC	1 cut(s)	1885
SapI	GCTCTTC	1 cut(s)	2121
SaqAI	TTAA	6 cut(s)	609, 726, 975, 1902, 2019, 3327
SatI	GCNGC	9 cut(s)	135, 516, 827, 840, 1081, 2256, 2445, 2499, 3124
Sau96I	GGNCC	5 cut(s)	689, 1088, 1391, 1944, 2562
ScaI	AGTACT	2 cut(s)	356, 779
SchI	GAGTC	3 cut(s)	145, 914, 2369
SduI	GDGCHC	5 cut(s)	448, 1885, 2340, 2718, 3073
SexAI	ACCWGGT	1 cut(s)	1117
SfaNI	GCATC	8 cut(s)	1002, 1201, 1330, 1745, 2417, 2930, 3146, 3174
SfcI	CTRYAG	2 cut(s)	10, 462
SfoI	GGCGCC	1 cut(s)	178
SinI	GGWCC	2 cut(s)	1088, 1391
SmiMI	CAYNNNNRTG	4 cut(s)	747, 1223, 1362, 3280
SmlI	CTYRAG	2 cut(s)	974, 1724
SmoI	CTYRAG	2 cut(s)	974, 1724
SphI	GCATGC	1 cut(s)	1922
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	2 cut(s)	1068, 2785
SspMI	CTAG	9 cut(s)	266, 416, 555, 693, 966, 2052, 2154, 2696, 3323
SstI	GAGCTC	1 cut(s)	1885
StyI	CCWWGG	2 cut(s)	2186, 2352
TaaI	ACNGT	9 cut(s)	14, 1183, 1289, 1667, 1822, 1834, 2204, 2464, 3181
TaiI	ACGT	3 cut(s)	2693, 3231, 3300
TaqI	TCGA	8 cut(s)	114, 473, 903, 1272, 1998, 2433, 2602, 2812
TatI	WGTACW	5 cut(s)	354, 777, 2459, 2880, 2976
TauI	GCSGC	2 cut(s)	137, 1083
Tru1I	TTAA	6 cut(s)	609, 726, 975, 1902, 2019, 3327
Tru9I	TTAA	6 cut(s)	609, 726, 975, 1902, 2019, 3327
TscAI	CASTG	8 cut(s)	1138, 1188, 1294, 1827, 2458, 2469, 2718, 3186
TseFI	GTSAC	5 cut(s)	580, 730, 796, 1834, 2825
TseI	GCWGC	7 cut(s)	515, 826, 839, 2255, 2444, 2498, 3123
Tsp45I	GTSAC	5 cut(s)	580, 730, 796, 1834, 2825
TspGWI	ACGGA	3 cut(s)	151, 186, 1037
TspRI	CASTG	8 cut(s)	1138, 1188, 1294, 1827, 2458, 2469, 2718, 3186
Tth111I	GACNNNGTC	1 cut(s)	3230
Van91I	CCANNNNNTGG	2 cut(s)	3032, 3155
Vha464I	CTTAAG	1 cut(s)	974
VpaK11BI	GGWCC	2 cut(s)	1088, 1391
VspI	ATTAAT	1 cut(s)	1902
XapI	RAATTY	5 cut(s)	168, 300, 655, 820, 2467
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	1922
XmiI	GTMKAC	1 cut(s)	1795
XspI	CTAG	9 cut(s)	266, 416, 555, 693, 966, 2052, 2154, 2696, 3323
ZrmI	AGTACT	2 cut(s)	356, 779
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.