Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Reverse (-)

37296080 .. 37300367

Gene Structure 4288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3633 bp

ATGTACCTCTACAGTCTCACTCTCCAGCGCGCGACTGGCATAGTCTGCGCCATCAACGGCAACTTCTCCGGCGGAAAGCACCAGGAAATCGTCGTCGCCAGAGGCAAAGTGCTCGACCTTATTCGCCCCGACGACAACGGTAAGATCCAGACTCTTCTCTCCGTTGAAATTTTCGGCGCCATTAGGTCTTTAGCTCAGTTTAGGCTCACTGGCTCTCAGAAAGACTATATTGTAGTCGGTTCCGATTCGGGCCGGATTGTTATTCTAGAGTACAAAGAGAAGAATGTGTTTGATAAGATCCACCAGGAGACTTTTGGCAAATCTGGGTGTAGGAGGATAGTTCCGGGTCAGTACTTGGCTATTGACCCCAAAGGGAGGGCTGTTATGGTTGGAGCCTGTGAAAAGCAGAAACTAGTATATGTTTTGAATAGAGATACATCTGCTAGGTTGACCATATCGTCCCCGCTGGAAGCTCATAAGTCTCATACTATAGTGTATTCGATTTGTGGGGTGGACTGTGGGTTTGATAATCCTATTTTTGCTGCCATTGAGTTGGATTATTCGGAGGTGGATCAGGATTCGAGTGGGAATGCGGAGAAGGAGGCCCAGAAGCATTTGACTTTCTATGAGCTAGATTTGGGGCTTAACCATGTCTCCAGAAAGTGGTCGGACCAGGTTGATAACGGTGCCAATTTGCTGGTTACTGTTCCTGGAGGCGGGGATGGGCCGAGTGGTGTGTTGGTCTGTGCAGAAAACTTTGTGATTTATAAGAACCAGGGACAAGCGGATGTTAGGGCTGTGATCCCGAGGCGTGCAGATTTGCCTGCTGAGCGCGGGGTTCTTATAGTTTCGGCAGCGACTCACAAGCAGAAGTCCATGTTCTTCTTTCTTTTGCAGACTGAGTATGGAGATATATTTAAGGTCACTTTGGAGCATAACAATGATCTTGTGTCAGAATTGAAGATCAAATACTTTGATACAATTCCAGTTACAACTTCAATCTGCGTGTTGAAATCAGGGTTTTTGTTTGCTGCTTCAGAGTTTGGGAATCACTCTTTGTACCAATTCCAGGCAATTGGTGAAGATCCTGATGTGGAGTCTTCCTCGGCTTCTTTGATGGAAACTGAAGAGGGTTTCCAGCCTTTGTTTTTCCAGCCTAGAAAACTGAAGAACCTTGTTAGGATTGATCAGGTTGAGAGCTTGATGCCCATAATGGATATGAAGGTCTCAAATCTCTTTGAAGAAGAAACACCTCAGATATTTACGCTTTGTGGACGGGGTCCGCGCTCATCCCTCAGGATACTAAGACCCGGTTTGGCTATCAGTGAGATGGCTGTGTCGGAGCTTCCTGGAGTGCCTAGTGCAGTCTGGACAGTGAAAAAGAATGTGACTGATGAGTTTGATGCATACATTGTGGTGTCATTCGCAAATGCTACTCTTGTGCTTTCAATTGGTGAGACAGTCGAAGAAGTTAGTGATAGTGGGTTTCTTGATACTACCCCATCACTTGCAGTGTCTTTGATAGGTGATGATTCTCTTATGCAAGTTCACCCAAATGGCATTAGGCATATTAGGGAAGACGGACGTATCAATGAATGGAGAACTCCTGGAAAGAGAACTATTGTTAAGGTGGGCTCCAATAGACTTCAGGTTGTTATTGCTCTCAGTGGAGGAGAACTTATATACTTTGAGGTTGATATGACTGGTCAATTGATGGAGGTTGAGAAGCATGAAATGTCTGGAGATGTAGCTTGTCTGGACATTGCCCCAGTACCTGAAGGGAGACAGAGATCTCGTTTCCTTGCAGTTGGTTCATATGACAACACAATTCGTATATTATCATTGGATCCTGATGACTGTATGCAGATTCTGAGTGTTCAAAGTGTTTCTTCAATTCCAGAATCTCTCCTGTTTCTTGAGGTTCAGGCATCAATTGGTGGTGAGGATGGTGCTGATCATCCTGCCAACCTTTTCCTTAATGCCGGTTTGCGAACTGGGATTTTGTTCAGAACGGTGGTGGATATGGTGACAGGTCAGCTTTCTGATTCCCGTTCTCGATTCTTAGGACTAAGAGCTCCAAAGCTATTTTCTATTAATATAAGAGGCAAGCATGCCATGCTTTGTTTGTCAAGTCGCCCTTGGCTTGGTTATATTCATCAAGGACATTTCCTGTTAACACCCCTATCGTATGAGACTCTTGAATATGCGGCCTCATTTTCATCTGATCAATGTGCGGAAGGTGTAGTTGCTGTTGCTGGCAGTGCTTTGAGGGTTTTTACTATTGAAAGACTGGGAGAAACATTTAATGAAACTGTTATTCCTCTGAGGTACACCCCTAGAAAGTTTGTGGTTCAAGTGAAACGGAAGCTTTTGGTAATTATCGAAAGTGATCAAGGAGCGTTCACCGCAGAAGAGCGTGAAGCTGCAAAAAAGGAGTGCTTTGAGGCTGCAGAACTAGGTGAAAATGGAAATGGTAATGTTGAGCAGATGGAAAATGGTGATACTGAGGATGACCCCCTCTCTGATGAGCATTATGGCTATCCTAAGGCAGAGTCTGACAAATGGGTTTCTTGCATTCGAGTTCTTGACCCAAAGACAGCAACTACAACCTGTTTGCTGGAGCTTCTTGATAATGAGGCCGCATTCAGTGTATGTACGGTGAATTTTCATGATAAGGAGTATGGTACGCTTTTGGCTGTGGGTACTGCTAAGGGACTTCAATTTTGGCCCAGGAAAAGTATAACTGCAGGATATATTCACATTTATCGATTTCTAGATGATGGGAAGTCCCTTGAACTTTTGCACAAGACACAAGTGGATGGTGTTCCTCTTGCTTTATGTCAGTTTCAAGGAAGGTTACTGGCAGGGATAGGACCAGTGCTCAGACTATATGATTTGGGGAAGAAAAGACTGCTTAGGAAATGTGAAAATAAGTTGTTTCCCAACAATATCGTATCCATTCAAACGTATCGTGATCGAATTTACGTAGGTGACATTCAAGAGTCATTCCACTACTGCAAGTATAGGCGGGATGAGAATCAGCTGTATATATTTGCTGATGATTGTGTTCCAAGATGGCTTACAGCATCATTCCATATAGATTTTGACACCATGGCAGGTGCGGACAAGTTTGGAAATGTGTATTTCGTGCGGTTACCACAGGATGTTTCAGATGAGATAGAAGAAGATCCAACAGGTGGGAGGATAAAATGGGAGCAGGGGAAGTTGAATGGCGCTCCCAACAAAGTAGAGGAGATAGTGCAGTTTCATGTTGGTGATGTGGTCAGCTGCTTGCAGAAGGCATCTCTCATTCCAGGTGGTGGTGAGTGCATCATTTATGGGACAGTGATGGGTAGTTTGGGTGCATTGCTTGCATTCACTTCCCGTGATGATGTTGACTTCTTTTCTCACCTGGAGATGTATATGAGGCAAGAGCATCCCCCCTTGTGTGGAAGAGATCACATGGCTTACAGATCAGCTTATTTCCCGGTTAAGGATGTTATTGATGGGGATCTATGTGAGCAGTACCCAACATTGCCTATGGATCTACAGAGGAAAATTGCAGATGAGTTGGACAGAACTCCTGGAGAGATACTGAAGAAACTCGAGGAAATTCGAAATAAGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1210

Amino Acids

134.57

Weight (kDa)

5.25

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	14 - 374	5.5e-120	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	441 - 761	1.5e-86	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	857 - 1176	4.9e-95	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AarI	CACCTGC	1 cut(s)	3107
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	3107
AccB1I	GGYRCC	2 cut(s)	176, 686
AccB7I	CCANNNNNTGG	3 cut(s)	663, 3197, 3320
AccII	CGCG	4 cut(s)	30, 32, 834, 1285
AcsI	RAATTY	4 cut(s)	168, 2662, 2979, 3612
AcuI	CTGAAG	6 cut(s)	1020, 1146, 1187, 1631, 1797, 3617
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	9 cut(s)	375, 663, 716, 1069, 2144, 3197, 3320, 3449, 3493
AhlI	ACTAGT	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	2071, 2103
Alw21I	GWGCWC	3 cut(s)	114, 2077, 2883
Alw26I	GTCTC	8 cut(s)	20, 302, 486, 658, 1231, 1451, 1777, 2186
AlwNI	CAGNNNCTG	3 cut(s)	1775, 1870, 2555
Ama87I	CYCGRG	2 cut(s)	805, 3605
AoxI	GGCC	6 cut(s)	250, 603, 725, 2208, 2637, 2726
ApeKI	GCWGC	6 cut(s)	542, 854, 1031, 2423, 2447, 3288
ApoI	RAATTY	4 cut(s)	168, 2662, 2979, 3612
ArsI	GACNNNNNNTTYG	4 cut(s)	506, 538, 2706, 2738
AseI	ATTAAT	1 cut(s)	2094
AspLEI	GCGC	7 cut(s)	30, 32, 50, 179, 834, 1287, 3236
AspS9I	GGNCC	7 cut(s)	250, 604, 670, 725, 1280, 2727, 2873
AsuC2I	CCSGG	3 cut(s)	345, 1311, 3488
AsuII	TTCGAA	1 cut(s)	3616
AvaI	CYCGRG	2 cut(s)	805, 3605
AvaII	GGWCC	3 cut(s)	670, 1280, 2873
AxyI	CCTNAGG	2 cut(s)	1295, 2544
BaeI	ACNNNNGTAYC	2 cut(s)	1570, 1603
BamHI	GGATCC	1 cut(s)	1846
BanI	GGYRCC	2 cut(s)	176, 686
BanII	GRGCYC	2 cut(s)	1637, 2077
BarI	GAAGNNNNNNTAC	2 cut(s)	953, 985
BbsI	GAAGAC	2 cut(s)	1092, 1584
Bbv12I	GWGCWC	3 cut(s)	114, 2077, 2883
BbvI	GCAGC	6 cut(s)	529, 866, 1018, 2410, 2434, 3275
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciVI	GTATCC	2 cut(s)	1293, 2965
BclI	TGATCA	4 cut(s)	1186, 1954, 2224, 2389
BcnI	CCSGG	3 cut(s)	345, 1311, 3488
BcoDI	GTCTC	8 cut(s)	20, 302, 486, 658, 1231, 1451, 1777, 2186
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	9 cut(s)	266, 413, 444, 632, 1158, 1359, 2337, 2456, 2774
BfmI	CTRYAG	5 cut(s)	10, 489, 2448, 2745, 3548
BfoI	RGCGCY	2 cut(s)	180, 3237
BfuAI	ACCTGC	1 cut(s)	3107
BfuI	GTATCC	2 cut(s)	1293, 2965
BglII	AGATCT	1 cut(s)	1790
BisI	GCNGC	8 cut(s)	543, 855, 1032, 2208, 2424, 2448, 2640, 3289
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	8 cut(s)	544, 856, 1033, 2209, 2425, 2449, 2641, 3290
BmcAI	AGTACT	1 cut(s)	353
Bme18I	GGWCC	3 cut(s)	670, 1280, 2873
BmeT110I	CYCGRG	2 cut(s)	805, 3605
BmgT120I	GGNCC	7 cut(s)	250, 604, 670, 725, 1280, 2727, 2873
BmiI	GGNNCC	7 cut(s)	178, 241, 394, 688, 1281, 1636, 1848
BmrI	ACTGGG	3 cut(s)	1763, 2004, 2300
BmsI	GCATC	7 cut(s)	1194, 1393, 1937, 3095, 3311, 3339, 3445
BmuI	ACTGGG	3 cut(s)	1763, 2004, 2300
BpiI	GAAGAC	2 cut(s)	1092, 1584
BplI	GAGNNNNNCTC	2 cut(s)	1088, 1120
BpmI	CTGGAG	8 cut(s)	8, 640, 732, 1371, 1761, 2639, 3434, 3606
Bpu10I	CCTNAGC	2 cut(s)	2709, 2915
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	3616
BpuEI	CTTGAG	1 cut(s)	1937
BpuMI	CCSGG	3 cut(s)	345, 1311, 3488
Bsa29I	ATCGAT	1 cut(s)	2767
BsaAI	YACGTR	1 cut(s)	2986
BsaBI	GATNNNNATC	2 cut(s)	3036, 3510
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	1231
BsaJI	CCNNGG	6 cut(s)	775, 806, 1104, 2138, 2729, 3111
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	9 cut(s)	375, 663, 716, 1069, 2144, 3197, 3320, 3449, 3493
Bse118I	RCCGGY	1 cut(s)	1982
Bse1I	ACTGG	9 cut(s)	40, 214, 986, 1708, 1769, 1999, 2295, 2865, 2876
Bse21I	CCTNAGG	2 cut(s)	1295, 2544
Bse3DI	GCAATG	3 cut(s)	1761, 3365, 3533
Bse8I	GATNNNNATC	2 cut(s)	3036, 3510
BseCI	ATCGAT	1 cut(s)	2767
BseDI	CCNNGG	6 cut(s)	775, 806, 1104, 2138, 2729, 3111
BseJI	GATNNNNATC	2 cut(s)	3036, 3510
BseLI	CCNNNNNNNGG	9 cut(s)	375, 663, 716, 1069, 2144, 3197, 3320, 3449, 3493
BseMI	GCAATG	3 cut(s)	1761, 3365, 3533
BseNI	ACTGG	9 cut(s)	40, 214, 986, 1708, 1769, 1999, 2295, 2865, 2876
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	1686, 3266
BseXI	GCAGC	6 cut(s)	529, 866, 1018, 2410, 2434, 3275
BsgI	GTGCAG	4 cut(s)	768, 834, 1383, 3281
Bsh1236I	CGCG	4 cut(s)	30, 32, 834, 1285
BshFI	GGCC	6 cut(s)	252, 605, 727, 2210, 2639, 2728
BshNI	GGYRCC	2 cut(s)	176, 686
BshVI	ATCGAT	1 cut(s)	2767
BsiHKAI	GWGCWC	3 cut(s)	114, 2077, 2883
BsiHKCI	CYCGRG	2 cut(s)	805, 3605
BsiSI	CCGG	6 cut(s)	69, 253, 344, 1311, 1983, 3488
BslFI	GGGAC	5 cut(s)	445, 792, 2727, 2773, 3355
BslI	CCNNNNNNNGG	9 cut(s)	375, 663, 716, 1069, 2144, 3197, 3320, 3449, 3493
BsmAI	GTCTC	8 cut(s)	20, 302, 486, 658, 1231, 1451, 1777, 2186
BsmFI	GGGAC	5 cut(s)	445, 792, 2727, 2773, 3355
BsmI	GAATGC	4 cut(s)	595, 2574, 2642, 3374
BsnI	GGCC	6 cut(s)	252, 605, 727, 2210, 2639, 2728
Bso31I	GGTCTC	1 cut(s)	1231
BsoBI	CYCGRG	2 cut(s)	805, 3605
Bsp119I	TTCGAA	1 cut(s)	3616
Bsp1286I	GDGCHC	4 cut(s)	114, 1637, 2077, 2883
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	1 cut(s)	3111
BspANI	GGCC	6 cut(s)	252, 605, 727, 2210, 2639, 2728
BspDI	ATCGAT	1 cut(s)	2767
BspFNI	CGCG	4 cut(s)	30, 32, 834, 1285
BspHI	TCATGA	1 cut(s)	2668
BspLI	GGNNCC	7 cut(s)	178, 241, 394, 688, 1281, 1636, 1848
BspMAI	CTGCAG	2 cut(s)	2452, 2749
BspMI	ACCTGC	1 cut(s)	3107
BspQI	GCTCTTC	1 cut(s)	2406
BspT104I	TTCGAA	1 cut(s)	3616
BspT107I	GGYRCC	2 cut(s)	176, 686
BspTNI	GGTCTC	1 cut(s)	1231
BsrDI	GCAATG	3 cut(s)	1761, 3365, 3533
BsrFI	RCCGGY	1 cut(s)	1982
BsrI	ACTGG	9 cut(s)	40, 214, 986, 1708, 1769, 1999, 2295, 2865, 2876
BssAI	RCCGGY	1 cut(s)	1982
BssECI	CCNNGG	6 cut(s)	775, 806, 1104, 2138, 2729, 3111
BssHII	GCGCGC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	2138, 3111
Bst6I	CTCTTC	4 cut(s)	159, 1122, 2406, 3448
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	3 cut(s)	45, 2116, 3371
BstBAI	YACGTR	1 cut(s)	2986
BstBI	TTCGAA	1 cut(s)	3616
BstC8I	GCNNGC	8 cut(s)	30, 813, 825, 2108, 2112, 2257, 3293, 3372
BstDSI	CCRYGG	1 cut(s)	3111
BstEII	GGTNACC	1 cut(s)	3153
BstFNI	CGCG	4 cut(s)	30, 32, 834, 1285
BstH2I	RGCGCY	2 cut(s)	180, 3237
BstHHI	GCGC	7 cut(s)	30, 32, 50, 179, 834, 1287, 3236
BstMAI	GTCTC	8 cut(s)	20, 302, 486, 658, 1231, 1451, 1777, 2186
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 45, 829, 2116, 2261, 2405, 3371
BstNSI	RCATGY	1 cut(s)	2114
BstPI	GGTNACC	1 cut(s)	3153
BstSFI	CTRYAG	5 cut(s)	10, 489, 2448, 2745, 3548
BstSNI	TACGTA	1 cut(s)	2986
BstUI	CGCG	4 cut(s)	30, 32, 834, 1285
BstV1I	GCAGC	6 cut(s)	529, 866, 1018, 2410, 2434, 3275
BstV2I	GAAGAC	2 cut(s)	1092, 1584
BstX2I	RGATCY	8 cut(s)	144, 297, 1084, 1790, 1846, 3187, 3511, 3544
BstXI	CCANNNNNNTGG	3 cut(s)	553, 697, 1076
BstYI	RGATCY	8 cut(s)	144, 297, 1084, 1790, 1846, 3187, 3511, 3544
Bsu15I	ATCGAT	1 cut(s)	2767
Bsu36I	CCTNAGG	2 cut(s)	1295, 2544
BsuI	GTATCC	2 cut(s)	1293, 2965
BsuRI	GGCC	6 cut(s)	252, 605, 727, 2210, 2639, 2728
BsuTUI	ATCGAT	1 cut(s)	2767
BtgI	CCRYGG	1 cut(s)	3111
BtsI	GCAGTG	2 cut(s)	1518, 2266
BtsIMutI	CAGTG	9 cut(s)	207, 1330, 1380, 1518, 1672, 2266, 2653, 2883, 3351
BveI	ACCTGC	1 cut(s)	3107
Cac8I	GCNNGC	8 cut(s)	30, 813, 825, 2108, 2112, 2257, 3293, 3372
CaiI	CAGNNNCTG	3 cut(s)	1775, 1870, 2555
CciI	TCATGA	1 cut(s)	2668
CfoI	GCGC	7 cut(s)	30, 32, 50, 179, 834, 1287, 3236
Cfr10I	RCCGGY	1 cut(s)	1982
Cfr13I	GGNCC	7 cut(s)	250, 604, 670, 725, 1280, 2727, 2873
ClaI	ATCGAT	1 cut(s)	2767
CsiI	ACCWGGT	1 cut(s)	672
CviAII	CATG	9 cut(s)	650, 877, 1730, 2111, 2116, 2669, 3112, 3269, 3463
DinI	GGCGCC	1 cut(s)	178
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	4 cut(s)	159, 1122, 2406, 3448
EarI	CTCTTC	4 cut(s)	159, 1122, 2406, 3448
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	2075
Eco105I	TACGTA	1 cut(s)	2986
Eco130I	CCWWGG	2 cut(s)	2138, 3111
Eco24I	GRGCYC	2 cut(s)	1637, 2077
Eco31I	GGTCTC	1 cut(s)	1231
Eco47I	GGWCC	3 cut(s)	670, 1280, 2873
Eco53kI	GAGCTC	1 cut(s)	2075
Eco57I	CTGAAG	6 cut(s)	1020, 1146, 1187, 1631, 1797, 3617
Eco81I	CCTNAGG	2 cut(s)	1295, 2544
Eco88I	CYCGRG	2 cut(s)	805, 3605
Eco91I	GGTNACC	1 cut(s)	3153
EcoICRI	GAGCTC	1 cut(s)	2075
EcoO65I	GGTNACC	1 cut(s)	3153
EcoT14I	CCWWGG	2 cut(s)	2138, 3111
EcoT22I	ATGCAT	1 cut(s)	1408
EcoT38I	GRGCYC	2 cut(s)	1637, 2077
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	2138, 3111
FaeI	CATG	9 cut(s)	653, 880, 1733, 2114, 2119, 2672, 3115, 3272, 3466
FalI	AAGNNNNNCTT	6 cut(s)	1873, 1905, 2122, 2154, 2423, 2455
FaqI	GGGAC	5 cut(s)	445, 792, 2727, 2773, 3355
FatI	CATG	9 cut(s)	649, 876, 1729, 2110, 2115, 2668, 3111, 3268, 3462
FauI	CCCGC	4 cut(s)	471, 710, 827, 3021
FauNDI	CATATG	1 cut(s)	1816
FbaI	TGATCA	4 cut(s)	1186, 1954, 2224, 2389
Fnu4HI	GCNGC	8 cut(s)	543, 855, 1032, 2208, 2424, 2448, 2640, 3289
FriOI	GRGCYC	2 cut(s)	1637, 2077
Fsp4HI	GCNGC	8 cut(s)	543, 855, 1032, 2208, 2424, 2448, 2640, 3289
FspBI	CTAG	9 cut(s)	266, 413, 444, 632, 1158, 1359, 2337, 2456, 2774
GlaI	GCGC	7 cut(s)	29, 31, 49, 178, 833, 1286, 3235
GluI	GCNGC	8 cut(s)	543, 855, 1032, 2208, 2424, 2448, 2640, 3289
GsuI	CTGGAG	8 cut(s)	8, 640, 732, 1371, 1761, 2639, 3434, 3606
HaeII	RGCGCY	2 cut(s)	180, 3237
HaeIII	GGCC	6 cut(s)	252, 605, 727, 2210, 2639, 2728
HapII	CCGG	6 cut(s)	69, 253, 344, 1311, 1983, 3488
HhaI	GCGC	7 cut(s)	30, 32, 50, 179, 834, 1287, 3236
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	9 cut(s)	653, 880, 1733, 2114, 2119, 2672, 3115, 3272, 3466
Hin6I	GCGC	7 cut(s)	28, 30, 48, 177, 832, 1285, 3234
HinP1I	GCGC	7 cut(s)	28, 30, 48, 177, 832, 1285, 3234
HincII	GTYRAC	3 cut(s)	450, 2175, 3397
HindII	GTYRAC	3 cut(s)	450, 2175, 3397
HindIII	AAGCTT	1 cut(s)	2366
HpaI	GTTAAC	1 cut(s)	2175
HpaII	CCGG	6 cut(s)	69, 253, 344, 1311, 1983, 3488
Hpy166II	GTNNAC	8 cut(s)	450, 514, 1274, 1549, 2175, 2331, 2403, 3397
Hpy8I	GTNNAC	8 cut(s)	450, 514, 1274, 1549, 2175, 2331, 2403, 3397
Hpy99I	CGWCG	3 cut(s)	95, 98, 134
HpyAV	CCTTC	6 cut(s)	592, 1216, 1772, 2231, 2847, 3292
HpyCH4IV	ACGT	3 cut(s)	1585, 2966, 2985
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 45, 829, 2116, 2261, 2405, 3371
HpySE526I	ACGT	3 cut(s)	1585, 2966, 2985
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	9 cut(s)	653, 880, 1733, 2114, 2119, 2672, 3115, 3272, 3466
HspAI	GCGC	7 cut(s)	28, 30, 48, 177, 832, 1285, 3234
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	4 cut(s)	1186, 1954, 2224, 2389
KspAI	GTTAAC	1 cut(s)	2175
LguI	GCTCTTC	1 cut(s)	2406
LmnI	GCTCC	9 cut(s)	392, 931, 1342, 1640, 2080, 2396, 2620, 3214, 3241
Lsp1109I	GCAGC	6 cut(s)	529, 866, 1018, 2410, 2434, 3275
LweI	GCATC	7 cut(s)	1194, 1393, 1937, 3095, 3311, 3339, 3445
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	9 cut(s)	266, 413, 444, 632, 1158, 1359, 2337, 2456, 2774
MaeII	ACGT	3 cut(s)	1585, 2966, 2985
MaeIII	GTNAC	8 cut(s)	700, 922, 988, 1387, 2026, 2856, 2990, 3153
MfeI	CAATTG	4 cut(s)	1074, 1449, 1709, 1932
MflI	RGATCY	8 cut(s)	144, 297, 1084, 1790, 1846, 3187, 3511, 3544
MhlI	GDGCHC	4 cut(s)	114, 1637, 2077, 2883
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	6 cut(s)	145, 853, 1106, 2188, 2561, 3011
MmeI	TCCRAC	6 cut(s)	370, 534, 648, 1320, 3215, 3552
Mph1103I	ATGCAT	1 cut(s)	1408
MseI	TTAA	9 cut(s)	645, 918, 1626, 1977, 2094, 2174, 2304, 3492, 3631
MslI	CAYNNNNRTG	4 cut(s)	939, 1415, 1554, 3273
MspA1I	CMGCKG	3 cut(s)	466, 3043, 3288
MspI	CCGG	6 cut(s)	69, 253, 344, 1311, 1983, 3488
MunI	CAATTG	4 cut(s)	1074, 1449, 1709, 1932
Mva1269I	GAATGC	4 cut(s)	595, 2574, 2642, 3374
MvnI	CGCG	4 cut(s)	30, 32, 834, 1285
MwoI	GCNNNNNNNGC	7 cut(s)	36, 45, 829, 2116, 2261, 2405, 3371
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	3 cut(s)	345, 1311, 3488
NcoI	CCATGG	1 cut(s)	3111
NdeI	CATATG	1 cut(s)	1816
NlaIII	CATG	9 cut(s)	653, 880, 1733, 2114, 2119, 2672, 3115, 3272, 3466
NlaIV	GGNNCC	7 cut(s)	178, 241, 394, 688, 1281, 1636, 1848
NmeAIII	GCCGAG	2 cut(s)	753, 1085
NmuCI	GTSAC	4 cut(s)	922, 1387, 2026, 2990
NsiI	ATGCAT	1 cut(s)	1408
NspI	RCATGY	1 cut(s)	2114
NspV	TTCGAA	1 cut(s)	3616
PaeI	GCATGC	1 cut(s)	2114
PaeR7I	CTCGAG	1 cut(s)	3605
PagI	TCATGA	1 cut(s)	2668
PaqCI	CACCTGC	1 cut(s)	3107
PauI	GCGCGC	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	2406
PctI	GAATGC	4 cut(s)	595, 2574, 2642, 3374
PfeI	GAWTC	9 cut(s)	245, 578, 1048, 1532, 1867, 1901, 2045, 2058, 3037
PflFI	GACNNNGTC	1 cut(s)	1278
PflMI	CCANNNNNTGG	3 cut(s)	663, 3197, 3320
PfoI	TCCNGGA	4 cut(s)	709, 1348, 1606, 3583
PkrI	GCNGC	8 cut(s)	544, 856, 1033, 2209, 2425, 2449, 2641, 3290
PleI	GAGTC	6 cut(s)	145, 853, 1105, 2188, 2560, 3010
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	6 cut(s)	145, 853, 1105, 2188, 2560, 3010
Ppu21I	YACGTR	1 cut(s)	2986
PshBI	ATTAAT	1 cut(s)	2094
PsiI	TTATAA	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	2077
PspEI	GGTNACC	1 cut(s)	3153
PspN4I	GGNNCC	7 cut(s)	178, 241, 394, 688, 1281, 1636, 1848
PspPI	GGNCC	7 cut(s)	250, 604, 670, 725, 1280, 2727, 2873
PspXI	VCTCGAGB	1 cut(s)	3605
PstI	CTGCAG	2 cut(s)	2452, 2749
PstNI	CAGNNNCTG	3 cut(s)	1775, 1870, 2555
PsuI	RGATCY	8 cut(s)	144, 297, 1084, 1790, 1846, 3187, 3511, 3544
PsyI	GACNNNGTC	1 cut(s)	1278
PteI	GCGCGC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	3043, 3288
RseI	CAYNNNNRTG	4 cut(s)	939, 1415, 1554, 3273
SacI	GAGCTC	1 cut(s)	2077
SapI	GCTCTTC	1 cut(s)	2406
SaqAI	TTAA	9 cut(s)	645, 918, 1626, 1977, 2094, 2174, 2304, 3492, 3631
SatI	GCNGC	8 cut(s)	543, 855, 1032, 2208, 2424, 2448, 2640, 3289
Sau96I	GGNCC	7 cut(s)	250, 604, 670, 725, 1280, 2727, 2873
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	6 cut(s)	145, 853, 1106, 2188, 2561, 3011
SduI	GDGCHC	4 cut(s)	114, 1637, 2077, 2883
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	7 cut(s)	1194, 1393, 1937, 3095, 3311, 3339, 3445
SfcI	CTRYAG	5 cut(s)	10, 489, 2448, 2745, 3548
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	3605
SfuI	TTCGAA	1 cut(s)	3616
SinI	GGWCC	3 cut(s)	670, 1280, 2873
SlaI	CTCGAG	1 cut(s)	3605
SmiMI	CAYNNNNRTG	4 cut(s)	939, 1415, 1554, 3273
SmlI	CTYRAG	2 cut(s)	1916, 3605
SmoI	CTYRAG	2 cut(s)	1916, 3605
SnaBI	TACGTA	1 cut(s)	2986
SpeI	ACTAGT	1 cut(s)	412
SphI	GCATGC	1 cut(s)	2114
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	9 cut(s)	266, 413, 444, 632, 1158, 1359, 2337, 2456, 2774
SstI	GAGCTC	1 cut(s)	2077
StyI	CCWWGG	2 cut(s)	2138, 3111
TaiI	ACGT	3 cut(s)	1588, 2969, 2988
TatI	WGTACW	2 cut(s)	270, 351
TauI	GCSGC	2 cut(s)	2210, 2642
TfiI	GAWTC	9 cut(s)	245, 578, 1048, 1532, 1867, 1901, 2045, 2058, 3037
Tru1I	TTAA	9 cut(s)	645, 918, 1626, 1977, 2094, 2174, 2304, 3492, 3631
Tru9I	TTAA	9 cut(s)	645, 918, 1626, 1977, 2094, 2174, 2304, 3492, 3631
TscAI	CASTG	9 cut(s)	214, 1330, 1380, 1518, 1672, 2266, 2653, 2883, 3351
TseFI	GTSAC	4 cut(s)	922, 1387, 2026, 2990
TseI	GCWGC	6 cut(s)	542, 854, 1031, 2423, 2447, 3288
Tsp45I	GTSAC	4 cut(s)	922, 1387, 2026, 2990
TspDTI	ATGAA	9 cut(s)	1235, 1608, 1746, 1803, 2144, 2208, 2322, 2657, 3257
TspGWI	ACGGA	3 cut(s)	151, 1596, 2377
TspRI	CASTG	9 cut(s)	214, 1330, 1380, 1518, 1672, 2266, 2653, 2883, 3351
Tth111I	GACNNNGTC	1 cut(s)	1278
Van91I	CCANNNNNTGG	3 cut(s)	663, 3197, 3320
VpaK11BI	GGWCC	3 cut(s)	670, 1280, 2873
VspI	ATTAAT	1 cut(s)	2094
XapI	RAATTY	4 cut(s)	168, 2662, 2979, 3612
XbaI	TCTAGA	2 cut(s)	265, 2773
XceI	RCATGY	1 cut(s)	2114
XcmI	CCANNNNNNNNNTGG	2 cut(s)	32, 311
XhoI	CTCGAG	1 cut(s)	3605
XspI	CTAG	9 cut(s)	266, 413, 444, 632, 1158, 1359, 2337, 2456, 2774
ZrmI	AGTACT	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.