Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Reverse (-)

36700135 .. 36704465

Gene Structure 4331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG341900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3636 bp

ATGTACCTCTACAGTCTCACTCTCCAGCGCGCGACTGGCATAGTCTGCGCCATCAACGGCAACTTCTCCGGCGGAAAGCACCAGGAAATCGTCGTCGCCAGAGGCAAAGTGCTCGACCTTATTCGCCCCGACGACAACGGTAAGATCCAGACTCTTCTCTCCGTTGAAATTTTCGGCGCCATTAGGTCTTTAGCTCAGTTTAGGCTCACTGGCTCTCAGAAAGACTATATTGTAGTCGGTTCCGATTCGGGCCGGATTGTTATTCTAGAGTACAACAAGGAGAAGAATGTGTTTGATAAGATCCACCAGGAGACTTTTGGAAAATCTGGGTGTAGGAGGATAGTTCCGGGTCAGTACTTGGCTATTGACCCCAAAGGGAGGGCTGTTATGGTTGGAGCCTGTGAAAAGCAGAAACTAGTTTATGTTTTGAATAGAGATACATCTGCTAGGTTGACCATATCGTCGCCGCTGGAAGCTCATAAGTCTCATACTATAGTGTATTCGATTTGTGGGGTGGACTGTGGGTTTGATAATCCTATTTTTGCTGCCATTGAGTTGGATTATTCGGAGGTGGATCAGGATTCGAGTGGGAATGCGGAGAAGGAGGCCCAGAAGCATCTGACTTTCTATGAGCTAGATTTGGGGCTTAACCATGTCTCCAGAAAGTGGTCGGACCAGGTTGATAACGGTGCCAATTTGCTGGTTACTGTTCCTGGAGGTGGGGATGGGCCGAGTGGTGTGTTGGTCTGTGCAGAAAACTTTGTGATTTATAAGAACCAGGGACAAGCGGATGTTAGGGCTGTGATCCCGAGGCGTGCAGATTTGCCTGCTGAGCGCGGGGTTCTTATAGTTTCGGCAGCTACTCACAAGCAGAAGTCCATGTTCTTCTTTCTTTTGCAGACTGAGTATGGAGATATATTCAAGGTCACTTTGGAGCATAACAATGATCTTGTGTCAGAATTGAAGATCAAATACTTTGATACAATTCCAGTTACAACTTCAATCTGCGTGTTGAAATCAGGGTTTTTGTTTGCTGCTTCAGAGTTTGGGAATCACTCTTTATACCAATTCCAGGCAATAGGTGAAGATCCTGACGTGGAGTCTTCCTCGGCTTCTTTGATGGAAACTGAAGAGGGTTTCCAGCCTTTGTTTTTCCAGCCTAGAAAACTGAAGAACCTTGTTAGGATTGATCAGGTTGAGAGCTTGATGCCCATAATGGATATGAAGGTCTCAAATCTCTTTGAAGAAGAAACACCTCAGATATTTACGCTTTGTGGAAGGGGTCCGCGTTCATCCCTCAGGATACTAAGACCTGGTTTGGCTATCAGTGAGATGGCTGTGTCGGAGCTTCCTGGAGTGCCTAGTGCAGTCTGGACAGTGAAAAAGAATGTGACTGATGAGTTTGATGCATACATTGTGGTGTCATTTGCAAATGCTACTCTTGTGCTTTCAATTGGTGAGACAGTCGAAGAAGTTAGTGATAGTGGGTTTCTTGATACTACCCCATCACTTGCAGTGTCTTTGATAGGTGATGATTCTCTTATGCAAGTTCACCCAAATGGCATTAGGCATATTAGGGAAGACGGACGTATCAATGAATGGAGAACTCCTGGAAAGAGAACTATTGTTAAGGTTGGCTCCAATAGACTTCAGGTTGTTATTGCTCTCAGTGGAGGAGAACTTATATACTTTGAGGTTGATATGACTGGTCAATTGATGGAGGTTGAGAAGCATGAAATGTCTGGAGATGTAGCTTGTCTGGACATTGCCCCAGTACCTGAAGGGAGACAGAGATCTCGTTTCCTTGCAGTTGGTTCATATGACAACACAATTCGTATATTATCATTGGATCCTGATGATTGTATGCAGATTCTGAGTGTTCAAAGTGTTTCTTCAATTCCAGAATCTCTCCTGTTTCTTGAGGTTCAGGCATCAATTGGTGGTGAGGATGGTGCTGACCATCCTGCCAACCTTTTCCTTAATGCCGGTTTGCGAACTGGGATTTTGTTCAGAACAGTGGTGGATATGGTGACAGGTCAGCTCTCTGATTCCCGTTCTCGATTCTTAGGACTAAGAGCTCCAAAGCTATTTTCTATTAATATAAGAGGCAAGCATGCCATGCTTTGTTTGTCAAGTCGCCCCTGGCTTGGTTATATTCATCAAGGACATTTCCTGTTAACACCCCTATCGTATGAGACTCTTGAATATGCGGCCTCATTTTCATCTGATCAATGTGCGGAAGGTGTTGTCGCTGTTGCTGGCAGTGCTTTGAGGGTTTTTACTATTGAAAGACTGGGAGAAACATTTAATGAAACTGTTATTCCTCTGAGGTACACCCCTAGAAAGTTTGTGGTTCAAGTGAAACGAAAGCTTTTGGTAATTATCGAAAGTGATCAAGGAGCGTTCACCGCAGAAGAGCGTGAAGCTGCCAAAAAGGAGTGCTTTGAGGCTGCAGAACTAGGTGAAAATGGAAATGGTAATGTTGAGCAGATGGAAAATGGTGATACTGAGGATGACCCCCTCTCTGATGAACATTATGGCTATCCTAAGGCAGAGTCTGACAAATGGGTTTCTTGCATTCGAGTTCTTGACCCAAAGACAGCAACTACCACCTGTTTGCTGGAGCTTCTTGATAATGAGGCCGCATTCAGTGTATGTACAGTGAATTTTCATGATAAGGAGTACGGCACGCTTTTGGCTGTGGGTACTGCTAAGGGACTTCAATTTTGGCCCAAGAAAAGTATAACTGCAGGATATATTCACGTATATCGATTTCTAGATGATGGAAAGTCCCTTGAACTTTTGCACAAGACACAAGTGGATGGTGTTCCTCTTGCTTTATGTCAGTTTCAAGGAAGGTTACTCGCAGGGATAGGACCAGTGCTCAGACTATATGATTTGGGGAAGAAAAGACTGCTTAGGAAATGTGAAAATAAGCTGTTTCCCAACAATATCGTATCCATTCAAACGTATCGTGATCGAATTTACGTAGGTGACATTCAAGAGTCATTCCACTACTGCAAGTATAGGCGGGATGAGAATCAGCTGTATATATTTGCTGATGATTGTGTTCCAAGATGGCTTACAGCATCATTCCATATAGATTTTGACACCATGGCAGGTGCGGACAAGTTTGGAAATGTGTATTTTGTGCGGTTACCACAGGATGTTTCAGATGAGATAGAAGAAGATCCAACAGGTGGAAGGATAAAATGGGAGCAGGGGAAGTTGAATGGCGCTCCCAACAAAGTAGAGGAGATAGTGCAGTTTCATGTTGGTGATGTGGTCAGCTGCTTGCAGAAGGCATCTCTCATTCCAGGTGGTGGTGAGTGCATCATTTATGGGACAGTGATGGGTAGTTTGGGGGCATTGCTTGCTTTCACCTCCCGTGATGATGTTGACTTCTTTTCTCACCTGGAGATGTATATGAGGCAAGAACATCCCCCCTTGTGTGGAAGAGATCACATGGCTTACAGATCAGCTTATTTTCCGGTTAAGGATGTTATTGATGGGGATCTATGTGAGCAGTACCCAACATTGCCTATGGATCTGCAGAGAAAAATTGCAGATGAGTTGGACAGAACTCCTGGAGAGATACTGAAGAAACTTGAGGAAATTCGAAATAAGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1211

Amino Acids

134.64

Weight (kDa)

5.25

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	14 - 375	9.7e-123	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	442 - 762	1.5e-86	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	858 - 1177	4.6e-95	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AarI	CACCTGC	1 cut(s)	3110
AasI	GACNNNNNNGTC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	3110
AccB1I	GGYRCC	2 cut(s)	176, 689
AccB7I	CCANNNNNTGG	3 cut(s)	666, 3200, 3323
AccII	CGCG	4 cut(s)	30, 32, 837, 1288
AcsI	RAATTY	4 cut(s)	168, 2665, 2982, 3615
AcuI	CTGAAG	6 cut(s)	1023, 1149, 1190, 1634, 1800, 3620
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	9 cut(s)	5, 272, 356, 1776, 2333, 2659, 2684, 2707, 3530
AfiI	CCNNNNNNNGG	8 cut(s)	378, 666, 719, 1072, 2147, 3200, 3323, 3452
AhdI	GACNNNNNGTC	1 cut(s)	1099
AhlI	ACTAGT	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	1096
AjuI	GAANNNNNNNTTGG	2 cut(s)	2074, 2106
Alw21I	GWGCWC	3 cut(s)	114, 2080, 2886
Alw26I	GTCTC	8 cut(s)	20, 305, 489, 661, 1234, 1454, 1780, 2189
AlwNI	CAGNNNCTG	3 cut(s)	1778, 1873, 2558
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	6 cut(s)	250, 606, 728, 2211, 2640, 2729
ApeKI	GCWGC	6 cut(s)	545, 857, 1034, 2426, 2450, 3291
ApoI	RAATTY	4 cut(s)	168, 2665, 2982, 3615
ArsI	GACNNNNNNTTYG	4 cut(s)	509, 541, 2709, 2741
AseI	ATTAAT	1 cut(s)	2097
AspLEI	GCGC	6 cut(s)	30, 32, 50, 179, 837, 3239
AspS9I	GGNCC	7 cut(s)	250, 607, 673, 728, 1283, 2730, 2876
AsuC2I	CCSGG	1 cut(s)	348
AsuII	TTCGAA	1 cut(s)	3619
AvaI	CYCGRG	1 cut(s)	808
AvaII	GGWCC	3 cut(s)	673, 1283, 2876
AxyI	CCTNAGG	2 cut(s)	1298, 2547
BaeI	ACNNNNGTAYC	2 cut(s)	1573, 1606
BamHI	GGATCC	1 cut(s)	1849
BanI	GGYRCC	2 cut(s)	176, 689
BanII	GRGCYC	1 cut(s)	2080
BarI	GAAGNNNNNNTAC	2 cut(s)	956, 988
BbsI	GAAGAC	2 cut(s)	1095, 1587
Bbv12I	GWGCWC	3 cut(s)	114, 2080, 2886
BbvI	GCAGC	6 cut(s)	532, 869, 1021, 2413, 2437, 3278
BceAI	ACGGC	2 cut(s)	73, 2701
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciVI	GTATCC	2 cut(s)	1296, 2968
BclI	TGATCA	3 cut(s)	1189, 2227, 2392
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	8 cut(s)	20, 305, 489, 661, 1234, 1454, 1780, 2189
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	9 cut(s)	266, 416, 447, 635, 1161, 1362, 2340, 2459, 2777
BfmI	CTRYAG	5 cut(s)	10, 492, 2451, 2748, 3551
BfoI	RGCGCY	2 cut(s)	180, 3240
BfuAI	ACCTGC	1 cut(s)	3110
BfuI	GTATCC	2 cut(s)	1296, 2968
BglII	AGATCT	1 cut(s)	1793
BisI	GCNGC	9 cut(s)	467, 546, 858, 1035, 2211, 2427, 2451, 2643, 3292
BlpI	GCTNAGC	1 cut(s)	831
BlsI	GCNGC	9 cut(s)	468, 547, 859, 1036, 2212, 2428, 2452, 2644, 3293
BmcAI	AGTACT	1 cut(s)	356
Bme18I	GGWCC	3 cut(s)	673, 1283, 2876
BmeRI	GACNNNNNGTC	1 cut(s)	1099
BmeT110I	CYCGRG	1 cut(s)	808
BmgBI	CACGTC	1 cut(s)	1096
BmgT120I	GGNCC	7 cut(s)	250, 607, 673, 728, 1283, 2730, 2876
BmiI	GGNNCC	7 cut(s)	178, 241, 397, 691, 1284, 1639, 1851
BmrI	ACTGGG	3 cut(s)	1766, 2007, 2303
BmsI	GCATC	7 cut(s)	625, 1197, 1396, 1940, 3098, 3314, 3342
BmuI	ACTGGG	3 cut(s)	1766, 2007, 2303
BpiI	GAAGAC	2 cut(s)	1095, 1587
BplI	GAGNNNNNCTC	2 cut(s)	1091, 1123
BpmI	CTGGAG	8 cut(s)	8, 643, 735, 1374, 1764, 2642, 3437, 3609
Bpu10I	CCTNAGC	2 cut(s)	2712, 2918
Bpu1102I	GCTNAGC	1 cut(s)	831
Bpu14I	TTCGAA	1 cut(s)	3619
BpuEI	CTTGAG	2 cut(s)	1940, 3629
BpuMI	CCSGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	2770
BsaAI	YACGTR	2 cut(s)	2764, 2989
BsaBI	GATNNNNATC	2 cut(s)	3039, 3513
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	1234
BsaJI	CCNNGG	5 cut(s)	778, 809, 1107, 2141, 3114
BsaWI	WCCGGW	1 cut(s)	3490
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	8 cut(s)	378, 666, 719, 1072, 2147, 3200, 3323, 3452
Bse118I	RCCGGY	1 cut(s)	1985
Bse1I	ACTGG	8 cut(s)	40, 214, 989, 1711, 1772, 2002, 2298, 2879
Bse21I	CCTNAGG	2 cut(s)	1298, 2547
Bse3DI	GCAATG	3 cut(s)	1764, 3368, 3536
Bse8I	GATNNNNATC	2 cut(s)	3039, 3513
BseCI	ATCGAT	1 cut(s)	2770
BseDI	CCNNGG	5 cut(s)	778, 809, 1107, 2141, 3114
BseJI	GATNNNNATC	2 cut(s)	3039, 3513
BseLI	CCNNNNNNNGG	8 cut(s)	378, 666, 719, 1072, 2147, 3200, 3323, 3452
BseMI	GCAATG	3 cut(s)	1764, 3368, 3536
BseNI	ACTGG	8 cut(s)	40, 214, 989, 1711, 1772, 2002, 2298, 2879
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	1689, 3269
BseXI	GCAGC	6 cut(s)	532, 869, 1021, 2413, 2437, 3278
BsgI	GTGCAG	4 cut(s)	771, 837, 1386, 3284
Bsh1236I	CGCG	4 cut(s)	30, 32, 837, 1288
BshFI	GGCC	6 cut(s)	252, 608, 730, 2213, 2642, 2731
BshNI	GGYRCC	2 cut(s)	176, 689
BshVI	ATCGAT	1 cut(s)	2770
BsiHKAI	GWGCWC	3 cut(s)	114, 2080, 2886
BsiHKCI	CYCGRG	1 cut(s)	808
BsiSI	CCGG	5 cut(s)	69, 253, 347, 1986, 3491
BslFI	GGGAC	4 cut(s)	795, 2730, 2776, 3358
BslI	CCNNNNNNNGG	8 cut(s)	378, 666, 719, 1072, 2147, 3200, 3323, 3452
BsmAI	GTCTC	8 cut(s)	20, 305, 489, 661, 1234, 1454, 1780, 2189
BsmFI	GGGAC	4 cut(s)	795, 2730, 2776, 3358
BsmI	GAATGC	3 cut(s)	598, 2577, 2645
BsnI	GGCC	6 cut(s)	252, 608, 730, 2213, 2642, 2731
Bso31I	GGTCTC	1 cut(s)	1234
BsoBI	CYCGRG	1 cut(s)	808
Bsp119I	TTCGAA	1 cut(s)	3619
Bsp1286I	GDGCHC	3 cut(s)	114, 2080, 2886
Bsp1407I	TGTACA	1 cut(s)	2657
Bsp1720I	GCTNAGC	1 cut(s)	831
Bsp19I	CCATGG	1 cut(s)	3114
BspANI	GGCC	6 cut(s)	252, 608, 730, 2213, 2642, 2731
BspDI	ATCGAT	1 cut(s)	2770
BspFNI	CGCG	4 cut(s)	30, 32, 837, 1288
BspHI	TCATGA	1 cut(s)	2671
BspLI	GGNNCC	7 cut(s)	178, 241, 397, 691, 1284, 1639, 1851
BspMAI	CTGCAG	3 cut(s)	2455, 2752, 3555
BspMI	ACCTGC	1 cut(s)	3110
BspQI	GCTCTTC	1 cut(s)	2409
BspT104I	TTCGAA	1 cut(s)	3619
BspT107I	GGYRCC	2 cut(s)	176, 689
BspTNI	GGTCTC	1 cut(s)	1234
BsrDI	GCAATG	3 cut(s)	1764, 3368, 3536
BsrFI	RCCGGY	1 cut(s)	1985
BsrGI	TGTACA	1 cut(s)	2657
BsrI	ACTGG	8 cut(s)	40, 214, 989, 1711, 1772, 2002, 2298, 2879
BssAI	RCCGGY	1 cut(s)	1985
BssECI	CCNNGG	5 cut(s)	778, 809, 1107, 2141, 3114
BssHII	GCGCGC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	3114
Bst6I	CTCTTC	4 cut(s)	159, 1125, 2409, 3451
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	3 cut(s)	45, 2119, 3374
BstAUI	TGTACA	1 cut(s)	2657
BstBAI	YACGTR	2 cut(s)	2764, 2989
BstBI	TTCGAA	1 cut(s)	3619
BstC8I	GCNNGC	9 cut(s)	30, 816, 828, 2111, 2115, 2260, 2690, 3296, 3375
BstDSI	CCRYGG	1 cut(s)	3114
BstEII	GGTNACC	1 cut(s)	3156
BstFNI	CGCG	4 cut(s)	30, 32, 837, 1288
BstH2I	RGCGCY	2 cut(s)	180, 3240
BstHHI	GCGC	6 cut(s)	30, 32, 50, 179, 837, 3239
BstMAI	GTCTC	8 cut(s)	20, 305, 489, 661, 1234, 1454, 1780, 2189
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 45, 832, 2119, 2264, 2408, 3374
BstNSI	RCATGY	1 cut(s)	2117
BstPI	GGTNACC	1 cut(s)	3156
BstSFI	CTRYAG	5 cut(s)	10, 492, 2451, 2748, 3551
BstSNI	TACGTA	1 cut(s)	2989
BstUI	CGCG	4 cut(s)	30, 32, 837, 1288
BstV1I	GCAGC	6 cut(s)	532, 869, 1021, 2413, 2437, 3278
BstV2I	GAAGAC	2 cut(s)	1095, 1587
BstX2I	RGATCY	8 cut(s)	144, 300, 1087, 1793, 1849, 3190, 3514, 3547
BstXI	CCANNNNNNTGG	2 cut(s)	556, 700
BstYI	RGATCY	8 cut(s)	144, 300, 1087, 1793, 1849, 3190, 3514, 3547
Bsu15I	ATCGAT	1 cut(s)	2770
Bsu36I	CCTNAGG	2 cut(s)	1298, 2547
BsuI	GTATCC	2 cut(s)	1296, 2968
BsuRI	GGCC	6 cut(s)	252, 608, 730, 2213, 2642, 2731
BsuTUI	ATCGAT	1 cut(s)	2770
BtgI	CCRYGG	1 cut(s)	3114
BtrI	CACGTC	1 cut(s)	1096
BtsI	GCAGTG	2 cut(s)	1521, 2269
BveI	ACCTGC	1 cut(s)	3110
Cac8I	GCNNGC	9 cut(s)	30, 816, 828, 2111, 2115, 2260, 2690, 3296, 3375
CaiI	CAGNNNCTG	3 cut(s)	1778, 1873, 2558
CciI	TCATGA	1 cut(s)	2671
CfoI	GCGC	6 cut(s)	30, 32, 50, 179, 837, 3239
Cfr10I	RCCGGY	1 cut(s)	1985
Cfr13I	GGNCC	7 cut(s)	250, 607, 673, 728, 1283, 2730, 2876
ClaI	ATCGAT	1 cut(s)	2770
CsiI	ACCWGGT	2 cut(s)	675, 1312
Csp6I	GTAC	9 cut(s)	4, 271, 355, 1775, 2332, 2658, 2683, 2706, 3529
CviAII	CATG	9 cut(s)	653, 880, 1733, 2114, 2119, 2672, 3115, 3272, 3466
CviQI	GTAC	9 cut(s)	4, 271, 355, 1775, 2332, 2658, 2683, 2706, 3529
DinI	GGCGCC	1 cut(s)	178
DrdI	GACNNNNNNGTC	1 cut(s)	460
DriI	GACNNNNNGTC	1 cut(s)	1099
DseDI	GACNNNNNNGTC	1 cut(s)	460
Eam1104I	CTCTTC	4 cut(s)	159, 1125, 2409, 3451
Eam1105I	GACNNNNNGTC	1 cut(s)	1099
EarI	CTCTTC	4 cut(s)	159, 1125, 2409, 3451
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	2078
Eco105I	TACGTA	1 cut(s)	2989
Eco130I	CCWWGG	1 cut(s)	3114
Eco24I	GRGCYC	1 cut(s)	2080
Eco31I	GGTCTC	1 cut(s)	1234
Eco47I	GGWCC	3 cut(s)	673, 1283, 2876
Eco53kI	GAGCTC	1 cut(s)	2078
Eco57I	CTGAAG	6 cut(s)	1023, 1149, 1190, 1634, 1800, 3620
Eco81I	CCTNAGG	2 cut(s)	1298, 2547
Eco88I	CYCGRG	1 cut(s)	808
Eco91I	GGTNACC	1 cut(s)	3156
EcoICRI	GAGCTC	1 cut(s)	2078
EcoO65I	GGTNACC	1 cut(s)	3156
EcoT14I	CCWWGG	1 cut(s)	3114
EcoT22I	ATGCAT	1 cut(s)	1411
EcoT38I	GRGCYC	1 cut(s)	2080
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	3114
FaeI	CATG	9 cut(s)	656, 883, 1736, 2117, 2122, 2675, 3118, 3275, 3469
FalI	AAGNNNNNCTT	4 cut(s)	1876, 1908, 2426, 2458
FaqI	GGGAC	4 cut(s)	795, 2730, 2776, 3358
FatI	CATG	9 cut(s)	652, 879, 1732, 2113, 2118, 2671, 3114, 3271, 3465
FauI	CCCGC	2 cut(s)	830, 3024
FauNDI	CATATG	1 cut(s)	1819
FbaI	TGATCA	3 cut(s)	1189, 2227, 2392
Fnu4HI	GCNGC	9 cut(s)	467, 546, 858, 1035, 2211, 2427, 2451, 2643, 3292
FriOI	GRGCYC	1 cut(s)	2080
Fsp4HI	GCNGC	9 cut(s)	467, 546, 858, 1035, 2211, 2427, 2451, 2643, 3292
FspBI	CTAG	9 cut(s)	266, 416, 447, 635, 1161, 1362, 2340, 2459, 2777
GlaI	GCGC	6 cut(s)	29, 31, 49, 178, 836, 3238
GluI	GCNGC	9 cut(s)	467, 546, 858, 1035, 2211, 2427, 2451, 2643, 3292
GsuI	CTGGAG	8 cut(s)	8, 643, 735, 1374, 1764, 2642, 3437, 3609
HaeII	RGCGCY	2 cut(s)	180, 3240
HaeIII	GGCC	6 cut(s)	252, 608, 730, 2213, 2642, 2731
HapII	CCGG	5 cut(s)	69, 253, 347, 1986, 3491
HhaI	GCGC	6 cut(s)	30, 32, 50, 179, 837, 3239
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	9 cut(s)	656, 883, 1736, 2117, 2122, 2675, 3118, 3275, 3469
Hin6I	GCGC	6 cut(s)	28, 30, 48, 177, 835, 3237
HinP1I	GCGC	6 cut(s)	28, 30, 48, 177, 835, 3237
HincII	GTYRAC	3 cut(s)	453, 2178, 3400
HindII	GTYRAC	3 cut(s)	453, 2178, 3400
HindIII	AAGCTT	1 cut(s)	2369
HpaI	GTTAAC	1 cut(s)	2178
HpaII	CCGG	5 cut(s)	69, 253, 347, 1986, 3491
Hpy166II	GTNNAC	7 cut(s)	453, 517, 1552, 2178, 2334, 2406, 3400
Hpy8I	GTNNAC	7 cut(s)	453, 517, 1552, 2178, 2334, 2406, 3400
Hpy99I	CGWCG	4 cut(s)	95, 98, 134, 466
HpyAV	CCTTC	8 cut(s)	595, 1219, 1272, 1775, 2234, 2850, 3198, 3295
HpyCH4IV	ACGT	5 cut(s)	1095, 1588, 2763, 2969, 2988
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 45, 832, 2119, 2264, 2408, 3374
HpySE526I	ACGT	5 cut(s)	1095, 1588, 2763, 2969, 2988
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	9 cut(s)	656, 883, 1736, 2117, 2122, 2675, 3118, 3275, 3469
HspAI	GCGC	6 cut(s)	28, 30, 48, 177, 835, 3237
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	3 cut(s)	1189, 2227, 2392
KspAI	GTTAAC	1 cut(s)	2178
LguI	GCTCTTC	1 cut(s)	2409
LmnI	GCTCC	9 cut(s)	395, 934, 1345, 1643, 2083, 2399, 2623, 3217, 3244
Lsp1109I	GCAGC	6 cut(s)	532, 869, 1021, 2413, 2437, 3278
LweI	GCATC	7 cut(s)	625, 1197, 1396, 1940, 3098, 3314, 3342
MabI	ACCWGGT	2 cut(s)	675, 1312
MaeI	CTAG	9 cut(s)	266, 416, 447, 635, 1161, 1362, 2340, 2459, 2777
MaeII	ACGT	5 cut(s)	1095, 1588, 2763, 2969, 2988
MaeIII	GTNAC	8 cut(s)	703, 925, 991, 1390, 2029, 2859, 2993, 3156
MfeI	CAATTG	3 cut(s)	1452, 1712, 1935
MflI	RGATCY	8 cut(s)	144, 300, 1087, 1793, 1849, 3190, 3514, 3547
MhlI	GDGCHC	3 cut(s)	114, 2080, 2886
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	5 cut(s)	145, 1109, 2191, 2564, 3014
MmeI	TCCRAC	6 cut(s)	373, 537, 651, 1323, 3218, 3555
Mph1103I	ATGCAT	1 cut(s)	1411
MseI	TTAA	8 cut(s)	648, 1629, 1980, 2097, 2177, 2307, 3495, 3634
MslI	CAYNNNNRTG	4 cut(s)	942, 1418, 1557, 3276
MspA1I	CMGCKG	3 cut(s)	469, 3046, 3291
MspI	CCGG	5 cut(s)	69, 253, 347, 1986, 3491
MunI	CAATTG	3 cut(s)	1452, 1712, 1935
Mva1269I	GAATGC	3 cut(s)	598, 2577, 2645
MvnI	CGCG	4 cut(s)	30, 32, 837, 1288
MwoI	GCNNNNNNNGC	7 cut(s)	36, 45, 832, 2119, 2264, 2408, 3374
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	3114
NdeI	CATATG	1 cut(s)	1819
NlaIII	CATG	9 cut(s)	656, 883, 1736, 2117, 2122, 2675, 3118, 3275, 3469
NlaIV	GGNNCC	7 cut(s)	178, 241, 397, 691, 1284, 1639, 1851
NmeAIII	GCCGAG	2 cut(s)	756, 1088
NmuCI	GTSAC	4 cut(s)	925, 1390, 2029, 2993
NsiI	ATGCAT	1 cut(s)	1411
NspI	RCATGY	1 cut(s)	2117
NspV	TTCGAA	1 cut(s)	3619
PaeI	GCATGC	1 cut(s)	2117
PagI	TCATGA	1 cut(s)	2671
PaqCI	CACCTGC	1 cut(s)	3110
PauI	GCGCGC	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	2409
PctI	GAATGC	3 cut(s)	598, 2577, 2645
PfeI	GAWTC	9 cut(s)	245, 581, 1051, 1535, 1870, 1904, 2048, 2061, 3040
PflMI	CCANNNNNTGG	3 cut(s)	666, 3200, 3323
PfoI	TCCNGGA	4 cut(s)	712, 1351, 1609, 3586
PkrI	GCNGC	9 cut(s)	468, 547, 859, 1036, 2212, 2428, 2452, 2644, 3293
PleI	GAGTC	5 cut(s)	145, 1108, 2191, 2563, 3013
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	5 cut(s)	145, 1108, 2191, 2563, 3013
Ppu21I	YACGTR	2 cut(s)	2764, 2989
PshBI	ATTAAT	1 cut(s)	2097
PsiI	TTATAA	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	2080
PspEI	GGTNACC	1 cut(s)	3156
PspN4I	GGNNCC	7 cut(s)	178, 241, 397, 691, 1284, 1639, 1851
PspPI	GGNCC	7 cut(s)	250, 607, 673, 728, 1283, 2730, 2876
PstI	CTGCAG	3 cut(s)	2455, 2752, 3555
PstNI	CAGNNNCTG	3 cut(s)	1778, 1873, 2558
PsuI	RGATCY	8 cut(s)	144, 300, 1087, 1793, 1849, 3190, 3514, 3547
PteI	GCGCGC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	3046, 3291
RsaI	GTAC	9 cut(s)	5, 272, 356, 1776, 2333, 2659, 2684, 2707, 3530
RsaNI	GTAC	9 cut(s)	4, 271, 355, 1775, 2332, 2658, 2683, 2706, 3529
RseI	CAYNNNNRTG	4 cut(s)	942, 1418, 1557, 3276
SacI	GAGCTC	1 cut(s)	2080
SapI	GCTCTTC	1 cut(s)	2409
SaqAI	TTAA	8 cut(s)	648, 1629, 1980, 2097, 2177, 2307, 3495, 3634
SatI	GCNGC	9 cut(s)	467, 546, 858, 1035, 2211, 2427, 2451, 2643, 3292
Sau96I	GGNCC	7 cut(s)	250, 607, 673, 728, 1283, 2730, 2876
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	5 cut(s)	145, 1109, 2191, 2564, 3014
SduI	GDGCHC	3 cut(s)	114, 2080, 2886
SexAI	ACCWGGT	2 cut(s)	675, 1312
SfaNI	GCATC	7 cut(s)	625, 1197, 1396, 1940, 3098, 3314, 3342
SfcI	CTRYAG	5 cut(s)	10, 492, 2451, 2748, 3551
SfoI	GGCGCC	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	3619
SinI	GGWCC	3 cut(s)	673, 1283, 2876
SmiMI	CAYNNNNRTG	4 cut(s)	942, 1418, 1557, 3276
SmlI	CTYRAG	2 cut(s)	1919, 3608
SmoI	CTYRAG	2 cut(s)	1919, 3608
SnaBI	TACGTA	1 cut(s)	2989
SpeI	ACTAGT	1 cut(s)	415
SphI	GCATGC	1 cut(s)	2117
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	9 cut(s)	266, 416, 447, 635, 1161, 1362, 2340, 2459, 2777
SstI	GAGCTC	1 cut(s)	2080
StyI	CCWWGG	1 cut(s)	3114
TaiI	ACGT	5 cut(s)	1098, 1591, 2766, 2972, 2991
TatI	WGTACW	3 cut(s)	270, 354, 2657
TauI	GCSGC	3 cut(s)	469, 2213, 2645
TfiI	GAWTC	9 cut(s)	245, 581, 1051, 1535, 1870, 1904, 2048, 2061, 3040
Tru1I	TTAA	8 cut(s)	648, 1629, 1980, 2097, 2177, 2307, 3495, 3634
Tru9I	TTAA	8 cut(s)	648, 1629, 1980, 2097, 2177, 2307, 3495, 3634
TseFI	GTSAC	4 cut(s)	925, 1390, 2029, 2993
TseI	GCWGC	6 cut(s)	545, 857, 1034, 2426, 2450, 3291
Tsp45I	GTSAC	4 cut(s)	925, 1390, 2029, 2993
TspGWI	ACGGA	2 cut(s)	151, 1599
Van91I	CCANNNNNTGG	3 cut(s)	666, 3200, 3323
VpaK11BI	GGWCC	3 cut(s)	673, 1283, 2876
VspI	ATTAAT	1 cut(s)	2097
XapI	RAATTY	4 cut(s)	168, 2665, 2982, 3615
XbaI	TCTAGA	2 cut(s)	265, 2776
XceI	RCATGY	1 cut(s)	2117
XcmI	CCANNNNNNNNNTGG	3 cut(s)	32, 314, 2617
XspI	CTAG	9 cut(s)	266, 416, 447, 635, 1161, 1362, 2340, 2459, 2777
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	1411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.