Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Reverse (-)

56305355 .. 56309465

Gene Structure 4111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGTGTGTGTTGAATTCGCAGCTTTTGTTTGCTGCTTCGGAGTTTGGGAATCACGCTTTGTATCAGTTCCAGGCAATAGGCGAAGAGCCTGATGTGGAGTCCTCCTCAGCTTTGTTCATGGAAACTGAAGAGGATTTCCAGCCATTGTGTTTCCAACCTAGAAAACTTAAGAACCTTGTTGGGATTGATCAGGTTGAGAGCTTGATGCCGATAACGGACATGAAGGTCTCTAATCTGTTTGAAGAAGAAACACCTCAAATATTTACGCTTTGTGGCCAGGGTCCTCGTTCATCTCTCAGGATACTAAGACCTGGTTTGGCTATCAGTGAGATGGCAGTGTCAGAGCTTCCTGGCATACCGAGTGCTGTCTGGACAGTGAAAAAGAAGGTGACTAATGAGTTTGATGCATACATTGTGGTGTCATTTGCAAACGCTACTCTTGTGTTTTCAATTGGTGAGACAATCGAAGAAGTTATTGACAGTGGTTTTCTTGATACTACCCCTTCACTTGCCGTGTCTTTGATAGGTGATGATGCTCTCATGCAAGTTCACCCAAATGGCATTAGGCATATTAGGGAAGGTGGACATATCAATGAATGGAGAACTCCTGGAAAGAGAACGATTATAATGGTTGGCTCTAATAGACTTCAGGTGGTCATTGCTTTGAGTGGAGGAGAACTTATATACTTTGATGTTGATATGACTGGTCAACTGGTGGAGGTTAAGAAGCATGAATTGTCTGGAGATGTAGCTTGTCTGGACATTGCCCCAGTACCTGAAGGGAGACAAAGATCTCGTTTCCTTGCAGTTGGCTCATATGACAACACGATTCGTATTTTGTCTTTGGATCCTGATGACTGTATGCAGATTCTGAGTGTTCAAAGTGTCTCTTCAATTCCAGAATCTCTCCTCTTTCTTGAGGCTCAGGCATCAGTTAGTGGTGAGGATGGTGCGGATCATCCTGCCAACCTTTTCCTTTATGCCGGTCTACGAACTGGGATTTTGTTCAGAACAGTGGTGGATATGGTGACAGGTCAGCTTTCTGATTCCCATTCTCGATTCTTAGGACTAAGAGCTCCTAAGCTATTTTCTATTAATATAAGAGGCAAGCATGCCATGCTTTGTTTGTCATGTCGGCCCTGGCTTGGTTATATTCATCAAGGACATTTTCTGTTAACACCACTATCGTATGAGACTATTGAATATGTGGCCTCATTTTCATCTGATCAATGTGTGGAAGGTGTAGTTGCTGTTGCTGGCAGTTCTTTGAGGGTTTTAACTATTGAAAGATTGGGAGAAACATTTAATGAAACTGTGATTCCTCTGAGGTATACCCCTAGAAAGTTTGTAGTTCAAGTGAAACGAAAGCTTTTGGTAATTATTGAAAGTGATCAAGGAGCATTCACAGCAGAAGAGCGTAAAACTGCAAAAAGGAAAACTAGGAAGGATGTTGATGAAGATTTCTCTCCACCAAGGAAGCGTAGGAACACTAGTAGCAATGGTGGTGCAGATCTTTCTCCACCAAAGGAGTGCTTTGAGGCTGCAGAAATAGGTGAAAAAAGAAATGGTAATGTGGAGCAGATGGAAAATGATGATAATGAGGATGATCCCCTCTCTGATGAGCACTATGGCTATCCCAAGGCAGAGTCTGACAAATGGGTTTCTTGCATTAGAGTTCTTGACCCAAAGACAGCAACTACAACTTGTTTGCTGGAGCTCGATAACGAAGCTACAATCAGTGTATGTACAGTGAATTTTCATGATAACGCCGGCCTGGTTGGGGCAGCTCCTCCGAAGGAGTATGGTACGCTTTTGGCTGTTGGAACCACAAAGGGACTTCAATTTTGGCCCAAGAAAAGTATAACCGGAGGATTTATTCATATATATCGATTTCTTGATGATGGAAAGTCCCTTGAACTTTTGCACAAAACAGAAGTGGATGGTGTTCCTCTTGCTTTATGTCAGTTTCAGGGAAGGTTACTAGCAGGGATAGGATCAGTGCTCAGACTATATGATTTGGGGAGAAAAAGATTGCTTAGGAAATGTGAGAATAAGCTGTTTCCCAACAATATTGTATCCATTCACACCTATCGTGATCGAATATATGTAGGTGACATTCAGGAGTCATTCCACTACTGCAAGTATAGGCGGGATGAGAATCAGCTGTATATATTTGCTGATGATCGTGTTCCAAGATGGCTGACAGCATCGTTCCATATTGATTTTGACACGATGGCAGGTGCGGACAAGTTTGGGAATGTGTACTTTGTGCGGTTACCACAGGATGTTTCAGATGGGATAGAAGAAGATCCAACAGGTGGGAGGATAAAATGGAAGCAGGGGAAGTTGAATGGTGCTCCAAACAAAGTGAAGGAGATCGTGCAGTTTCATGTTGGCGATGTAGTCAGCTGCTTGCAGAAGGCATCTCTCATTCCAGGTGGTGGTGAGTGCATCATTTACGGGACAGTGATGGGTAGCTTGGGTGCATTGTTTGCATTCACTTCCCGTGATGACGTTGTCTTCTTTTCTCACCTGGAGATGTATATGAGGCAGGAACATCCACCCTTGTGTGGGAGAGATCACATGGCTTATAGATCAGCTTATTTCCCTGTTAAGGATGTGATTGATGGAGATCTTTGCGAGCAGTACCCAACACTGCCTATGGATGTACAGAGGAAAATTGCAGTCGAGTTGGATAGGACTCCTGGAGAGATACTAAAGAAACTCGAGGAAATTCGAAATAAGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

917

Amino Acids

102.25

Weight (kDa)

5.42

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_2nd	PF23726	108 - 428	1.3e-81	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	555 - 883	1.3e-90	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AarI	CACCTGC	1 cut(s)	2228
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	2228
AccB7I	CCANNNNNTGG	2 cut(s)	2318, 2441
AccI	GTMKAC	2 cut(s)	988, 1331
AciI	CCGC	4 cut(s)	953, 2149, 2243, 2272
AclWI	GGATC	6 cut(s)	842, 855, 963, 1601, 2002, 2303
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	13, 1753, 2733
AcuI	CTGAAG	3 cut(s)	147, 632, 798
AfaI	GTAC	6 cut(s)	774, 1747, 1807, 2264, 2648, 2670
AfiI	CCNNNNNNNGG	7 cut(s)	1145, 1780, 2318, 2441, 2570, 2571, 2614
AflII	CTTAAG	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	1490
AleI	CACNNNNGTG	1 cut(s)	2566
Alw21I	GWGCWC	5 cut(s)	1078, 1626, 1719, 2004, 2359
Alw26I	GTCTC	5 cut(s)	232, 452, 778, 892, 1187
AlwI	GGATC	6 cut(s)	842, 855, 963, 1601, 2002, 2303
AlwNI	CAGNNNCTG	3 cut(s)	776, 871, 1649
Ama87I	CYCGRG	1 cut(s)	2726
AoxI	GGCC	5 cut(s)	274, 1136, 1209, 1771, 1847
ApeKI	GCWGC	5 cut(s)	19, 32, 1541, 1784, 2409
ApoI	RAATTY	3 cut(s)	13, 1753, 2733
ArsI	GACNNNNNNTTYG	2 cut(s)	1827, 1859
AseI	ATTAAT	1 cut(s)	1095
AspS9I	GGNCC	3 cut(s)	281, 1137, 1848
AsuII	TTCGAA	1 cut(s)	2737
AvaI	CYCGRG	1 cut(s)	2726
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	847
BanII	GRGCYC	2 cut(s)	1078, 1719
BbsI	GAAGAC	1 cut(s)	2512
Bbv12I	GWGCWC	5 cut(s)	1078, 1626, 1719, 2004, 2359
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	5 cut(s)	19, 31, 1528, 1796, 2396
BceAI	ACGGC	1 cut(s)	497
BciVI	GTATCC	2 cut(s)	294, 2086
BclI	TGATCA	3 cut(s)	187, 1225, 1390
BcoDI	GTCTC	5 cut(s)	232, 452, 778, 892, 1187
BcuI	ACTAGT	1 cut(s)	1490
BfaI	CTAG	5 cut(s)	159, 1338, 1440, 1491, 1982
BfmI	CTRYAG	1 cut(s)	1542
BfrI	CTTAAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	2228
BfuI	GTATCC	2 cut(s)	294, 2086
BglII	AGATCT	3 cut(s)	791, 1510, 2632
BisI	GCNGC	5 cut(s)	20, 33, 1542, 1785, 2410
BlsI	GCNGC	5 cut(s)	21, 34, 1543, 1786, 2411
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	2726
BmgT120I	GGNCC	3 cut(s)	281, 1137, 1848
BmiI	GGNNCC	3 cut(s)	282, 849, 1825
BmrI	ACTGGG	2 cut(s)	764, 1005
BmsI	GCATC	7 cut(s)	195, 394, 523, 938, 2216, 2432, 2460
BmuI	ACTGGG	2 cut(s)	764, 1005
BpiI	GAAGAC	1 cut(s)	2512
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	4 cut(s)	762, 1733, 2555, 2727
Bpu10I	CCTNAGC	4 cut(s)	106, 924, 1080, 2036
Bpu14I	TTCGAA	1 cut(s)	2737
BpuEI	CTTGAG	1 cut(s)	938
Bsa29I	ATCGAT	1 cut(s)	1888
BsaBI	GATNNNNATC	2 cut(s)	2157, 2631
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	277, 1139, 1472, 1638
BsaWI	WCCGGW	1 cut(s)	1865
Bsc4I	CCNNNNNNNGG	7 cut(s)	1145, 1780, 2318, 2441, 2570, 2571, 2614
Bse118I	RCCGGY	2 cut(s)	983, 1769
Bse1I	ACTGG	4 cut(s)	709, 717, 770, 1000
Bse3DI	GCAATG	3 cut(s)	657, 762, 1504
Bse8I	GATNNNNATC	2 cut(s)	2157, 2631
BseCI	ATCGAT	1 cut(s)	1888
BseDI	CCNNGG	4 cut(s)	277, 1139, 1472, 1638
BseJI	GATNNNNATC	2 cut(s)	2157, 2631
BseLI	CCNNNNNNNGG	7 cut(s)	1145, 1780, 2318, 2441, 2570, 2571, 2614
BseMI	GCAATG	3 cut(s)	657, 762, 1504
BseMII	CTCAG	6 cut(s)	120, 310, 863, 938, 1316, 2017
BseNI	ACTGG	4 cut(s)	709, 717, 770, 1000
BseRI	GAGGAG	4 cut(s)	94, 687, 899, 1779
BseXI	GCAGC	5 cut(s)	19, 31, 1528, 1796, 2396
BsgI	GTGCAG	2 cut(s)	1527, 2402
BshFI	GGCC	5 cut(s)	276, 1138, 1211, 1773, 1849
BshVI	ATCGAT	1 cut(s)	1888
BsiHKAI	GWGCWC	5 cut(s)	1078, 1626, 1719, 2004, 2359
BsiHKCI	CYCGRG	1 cut(s)	2726
BsiSI	CCGG	3 cut(s)	984, 1770, 1866
BslFI	GGGAC	3 cut(s)	1848, 1894, 2476
BslI	CCNNNNNNNGG	7 cut(s)	1145, 1780, 2318, 2441, 2570, 2571, 2614
BsmAI	GTCTC	5 cut(s)	232, 452, 778, 892, 1187
BsmFI	GGGAC	3 cut(s)	1848, 1894, 2476
BsmI	GAATGC	2 cut(s)	1400, 2495
BsnI	GGCC	5 cut(s)	276, 1138, 1211, 1773, 1849
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	2726
Bsp119I	TTCGAA	1 cut(s)	2737
Bsp1286I	GDGCHC	5 cut(s)	1078, 1626, 1719, 2004, 2359
Bsp1407I	TGTACA	2 cut(s)	1745, 2668
BspACI	CCGC	4 cut(s)	953, 2149, 2243, 2272
BspANI	GGCC	5 cut(s)	276, 1138, 1211, 1773, 1849
BspCNI	CTCAG	6 cut(s)	119, 309, 864, 937, 1317, 2016
BspDI	ATCGAT	1 cut(s)	1888
BspHI	TCATGA	1 cut(s)	1759
BspLI	GGNNCC	3 cut(s)	282, 849, 1825
BspMAI	CTGCAG	1 cut(s)	1546
BspMI	ACCTGC	1 cut(s)	2228
BspPI	GGATC	6 cut(s)	842, 855, 963, 1601, 2002, 2303
BspQI	GCTCTTC	2 cut(s)	78, 1407
BspT104I	TTCGAA	1 cut(s)	2737
BspTI	CTTAAG	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	3 cut(s)	657, 762, 1504
BsrFI	RCCGGY	2 cut(s)	983, 1769
BsrGI	TGTACA	2 cut(s)	1745, 2668
BsrI	ACTGG	4 cut(s)	709, 717, 770, 1000
BssAI	RCCGGY	2 cut(s)	983, 1769
BssECI	CCNNGG	4 cut(s)	277, 1139, 1472, 1638
BssNAI	GTATAC	1 cut(s)	1332
BssT1I	CCWWGG	2 cut(s)	1472, 1638
Bst1107I	GTATAC	1 cut(s)	1332
Bst4CI	ACNGT	7 cut(s)	376, 482, 860, 1015, 1315, 1750, 2467
Bst6I	CTCTTC	4 cut(s)	78, 123, 895, 1407
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	2 cut(s)	1117, 2492
BstAUI	TGTACA	2 cut(s)	1745, 2668
BstBI	TTCGAA	1 cut(s)	2737
BstC8I	GCNNGC	6 cut(s)	1109, 1113, 1258, 1771, 2414, 2642
BstEII	GGTNACC	1 cut(s)	2274
BstMAI	GTCTC	5 cut(s)	232, 452, 778, 892, 1187
BstMWI	GCNNNNNNNGC	3 cut(s)	1117, 1406, 2492
BstNSI	RCATGY	1 cut(s)	1115
BstPI	GGTNACC	1 cut(s)	2274
BstSFI	CTRYAG	1 cut(s)	1542
BstV1I	GCAGC	5 cut(s)	19, 31, 1528, 1796, 2396
BstV2I	GAAGAC	1 cut(s)	2512
BstX2I	RGATCY	5 cut(s)	791, 847, 1510, 2308, 2632
BstYI	RGATCY	5 cut(s)	791, 847, 1510, 2308, 2632
BstZ17I	GTATAC	1 cut(s)	1332
Bsu15I	ATCGAT	1 cut(s)	1888
BsuI	GTATCC	2 cut(s)	294, 2086
BsuRI	GGCC	5 cut(s)	276, 1138, 1211, 1773, 1849
BsuTUI	ATCGAT	1 cut(s)	1888
BtgZI	GCGATG	1 cut(s)	2412
BtsI	GCAGTG	2 cut(s)	342, 2654
BveI	ACCTGC	1 cut(s)	2228
Cac8I	GCNNGC	6 cut(s)	1109, 1113, 1258, 1771, 2414, 2642
CaiI	CAGNNNCTG	3 cut(s)	776, 871, 1649
CciI	TCATGA	1 cut(s)	1759
Cfr10I	RCCGGY	2 cut(s)	983, 1769
Cfr13I	GGNCC	3 cut(s)	281, 1137, 1848
ClaI	ATCGAT	1 cut(s)	1888
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	6 cut(s)	773, 1746, 1806, 2263, 2647, 2669
CviQI	GTAC	6 cut(s)	773, 1746, 1806, 2263, 2647, 2669
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	4 cut(s)	78, 123, 895, 1407
EarI	CTCTTC	4 cut(s)	78, 123, 895, 1407
Ecl136II	GAGCTC	2 cut(s)	1076, 1717
Eco130I	CCWWGG	2 cut(s)	1472, 1638
Eco24I	GRGCYC	2 cut(s)	1078, 1719
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	2 cut(s)	1076, 1717
Eco57I	CTGAAG	3 cut(s)	147, 632, 798
Eco88I	CYCGRG	1 cut(s)	2726
Eco91I	GGTNACC	1 cut(s)	2274
EcoICRI	GAGCTC	2 cut(s)	1076, 1717
EcoO109I	RGGNCCY	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	2274
EcoRI	GAATTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	1472, 1638
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	1078, 1719
ErhI	CCWWGG	2 cut(s)	1472, 1638
FalI	AAGNNNNNCTT	4 cut(s)	874, 906, 1517, 1549
FaqI	GGGAC	3 cut(s)	1848, 1894, 2476
FauI	CCCGC	1 cut(s)	2142
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	3 cut(s)	187, 1225, 1390
FblI	GTMKAC	2 cut(s)	988, 1331
Fnu4HI	GCNGC	5 cut(s)	20, 33, 1542, 1785, 2410
FriOI	GRGCYC	2 cut(s)	1078, 1719
Fsp4HI	GCNGC	5 cut(s)	20, 33, 1542, 1785, 2410
FspBI	CTAG	5 cut(s)	159, 1338, 1440, 1491, 1982
GluI	GCNGC	5 cut(s)	20, 33, 1542, 1785, 2410
GsuI	CTGGAG	4 cut(s)	762, 1733, 2555, 2727
HaeIII	GGCC	5 cut(s)	276, 1138, 1211, 1773, 1849
HapII	CCGG	3 cut(s)	984, 1770, 1866
HincII	GTYRAC	2 cut(s)	710, 1176
HindII	GTYRAC	2 cut(s)	710, 1176
HindIII	AAGCTT	1 cut(s)	1367
HpaI	GTTAAC	1 cut(s)	1176
HpaII	CCGG	3 cut(s)	984, 1770, 1866
Hpy166II	GTNNAC	7 cut(s)	550, 584, 710, 989, 1176, 1332, 2263
Hpy8I	GTNNAC	7 cut(s)	550, 584, 710, 989, 1176, 1332, 2263
HpyCH4III	ACNGT	7 cut(s)	376, 482, 860, 1015, 1315, 1750, 2467
HpyCH4IV	ACGT	1 cut(s)	2514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1117, 1406, 2492
HpySE526I	ACGT	1 cut(s)	2514
KroI	GCCGGC	1 cut(s)	1769
KroNI	GCCGGC	1 cut(s)	1771
Ksp22I	TGATCA	3 cut(s)	187, 1225, 1390
KspAI	GTTAAC	1 cut(s)	1176
LguI	GCTCTTC	2 cut(s)	78, 1407
LmnI	GCTCC	6 cut(s)	1081, 1397, 1576, 1714, 1792, 2362
Lsp1109I	GCAGC	5 cut(s)	19, 31, 1528, 1796, 2396
LweI	GCATC	7 cut(s)	195, 394, 523, 938, 2216, 2432, 2460
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	5 cut(s)	159, 1338, 1440, 1491, 1982
MaeII	ACGT	1 cut(s)	2514
MaeIII	GTNAC	5 cut(s)	388, 1027, 1977, 2111, 2274
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	5 cut(s)	791, 847, 1510, 2308, 2632
MhlI	GDGCHC	5 cut(s)	1078, 1626, 1719, 2004, 2359
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	9 cut(s)	13, 450, 734, 894, 1377, 1753, 1841, 2679, 2733
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	4 cut(s)	107, 1655, 2132, 2695
MmeI	TCCRAC	4 cut(s)	178, 1801, 2336, 2673
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	409
MroNI	GCCGGC	1 cut(s)	1769
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	8 cut(s)	168, 723, 1095, 1175, 1277, 1305, 2613, 2752
MslI	CAYNNNNRTG	4 cut(s)	416, 555, 591, 2566
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	2 cut(s)	2164, 2409
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	3 cut(s)	984, 1770, 1866
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	2 cut(s)	1400, 2495
MwoI	GCNNNNNNNGC	3 cut(s)	1117, 1406, 2492
NaeI	GCCGGC	1 cut(s)	1771
NdeI	CATATG	1 cut(s)	817
NgoMIV	GCCGGC	1 cut(s)	1769
NlaIV	GGNNCC	3 cut(s)	282, 849, 1825
NmuCI	GTSAC	3 cut(s)	388, 1027, 2111
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	1115
NspV	TTCGAA	1 cut(s)	2737
OliI	CACNNNNGTG	1 cut(s)	2566
PaeI	GCATGC	1 cut(s)	1115
PaeR7I	CTCGAG	1 cut(s)	2726
PagI	TCATGA	1 cut(s)	1759
PaqCI	CACCTGC	1 cut(s)	2228
PciSI	GCTCTTC	2 cut(s)	78, 1407
PctI	GAATGC	2 cut(s)	1400, 2495
PdiI	GCCGGC	1 cut(s)	1771
PfeI	GAWTC	8 cut(s)	49, 829, 868, 902, 1046, 1059, 1318, 2158
PflFI	GACNNNGTC	1 cut(s)	2516
PflMI	CCANNNNNTGG	2 cut(s)	2318, 2441
PfoI	TCCNGGA	2 cut(s)	607, 2704
PkrI	GCNGC	5 cut(s)	21, 34, 1543, 1786, 2411
PleI	GAGTC	4 cut(s)	106, 1654, 2131, 2695
PpsI	GAGTC	4 cut(s)	106, 1654, 2131, 2695
PpuMI	RGGWCCY	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	626
Psp124BI	GAGCTC	2 cut(s)	1078, 1719
Psp5II	RGGWCCY	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	2274
PspN4I	GGNNCC	3 cut(s)	282, 849, 1825
PspPI	GGNCC	3 cut(s)	281, 1137, 1848
PspPPI	RGGWCCY	1 cut(s)	281
PspXI	VCTCGAGB	1 cut(s)	2726
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	3 cut(s)	776, 871, 1649
PsuI	RGATCY	5 cut(s)	791, 847, 1510, 2308, 2632
PsyI	GACNNNGTC	1 cut(s)	2516
PvuII	CAGCTG	2 cut(s)	2164, 2409
RsaI	GTAC	6 cut(s)	774, 1747, 1807, 2264, 2648, 2670
RsaNI	GTAC	6 cut(s)	773, 1746, 1806, 2263, 2647, 2669
RseI	CAYNNNNRTG	4 cut(s)	416, 555, 591, 2566
SacI	GAGCTC	2 cut(s)	1078, 1719
SapI	GCTCTTC	2 cut(s)	78, 1407
SaqAI	TTAA	8 cut(s)	168, 723, 1095, 1175, 1277, 1305, 2613, 2752
SatI	GCNGC	5 cut(s)	20, 33, 1542, 1785, 2410
Sau96I	GGNCC	3 cut(s)	281, 1137, 1848
SchI	GAGTC	4 cut(s)	107, 1655, 2132, 2695
SduI	GDGCHC	5 cut(s)	1078, 1626, 1719, 2004, 2359
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	7 cut(s)	195, 394, 523, 938, 2216, 2432, 2460
SfcI	CTRYAG	1 cut(s)	1542
Sfr274I	CTCGAG	1 cut(s)	2726
SfuI	TTCGAA	1 cut(s)	2737
SinI	GGWCC	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	2726
SmiMI	CAYNNNNRTG	4 cut(s)	416, 555, 591, 2566
SmlI	CTYRAG	3 cut(s)	167, 917, 2726
SmoI	CTYRAG	3 cut(s)	167, 917, 2726
SpeI	ACTAGT	1 cut(s)	1490
SphI	GCATGC	1 cut(s)	1115
Sse9I	AATT	9 cut(s)	13, 450, 734, 894, 1377, 1753, 1841, 2679, 2733
SsiI	CCGC	4 cut(s)	953, 2149, 2243, 2272
SspI	AATATT	2 cut(s)	261, 2071
SspMI	CTAG	5 cut(s)	159, 1338, 1440, 1491, 1982
SstI	GAGCTC	2 cut(s)	1078, 1719
StyI	CCWWGG	2 cut(s)	1472, 1638
TaaI	ACNGT	7 cut(s)	376, 482, 860, 1015, 1315, 1750, 2467
TaiI	ACGT	1 cut(s)	2517
TaqI	TCGA	8 cut(s)	465, 1057, 1719, 1888, 2098, 2688, 2727, 2737
TasI	AATT	9 cut(s)	13, 450, 734, 894, 1377, 1753, 1841, 2679, 2733
TatI	WGTACW	3 cut(s)	1745, 2262, 2668
TfiI	GAWTC	8 cut(s)	49, 829, 868, 902, 1046, 1059, 1318, 2158
Tru1I	TTAA	8 cut(s)	168, 723, 1095, 1175, 1277, 1305, 2613, 2752
Tru9I	TTAA	8 cut(s)	168, 723, 1095, 1175, 1277, 1305, 2613, 2752
TseFI	GTSAC	3 cut(s)	388, 1027, 2111
TseI	GCWGC	5 cut(s)	19, 32, 1541, 1784, 2409
Tsp45I	GTSAC	3 cut(s)	388, 1027, 2111
TspGWI	ACGGA	1 cut(s)	230
Tth111I	GACNNNGTC	1 cut(s)	2516
Van91I	CCANNNNNTGG	2 cut(s)	2318, 2441
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	1095
XapI	RAATTY	3 cut(s)	13, 1753, 2733
XceI	RCATGY	1 cut(s)	1115
XhoI	CTCGAG	1 cut(s)	2726
XmiI	GTMKAC	2 cut(s)	988, 1331
XspI	CTAG	5 cut(s)	159, 1338, 1440, 1491, 1982
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.