Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008527.1

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Reverse (-)

693 .. 4439

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3687 bp

atgcacctctacagtctcactctccagcgcgcgacgggcatagtctgcgccatcagcggcaacttctccggcgaaaagaccccagaaatcgccgtcgcccgaggcaaagtcctcgaccttctccgccccgacgccgccggtaagatccagactctcctctccgttgaaattttcggcgccattaggtctttagctccgtttaggcttaccggctcccgaaaagactacattgtcgtcggctccgattccggccgaatcgtaatactagaatacaacaaagataagaatgtatttaataaaattcaccaagagaccttcggaaaatccgggtctcgccggattgttccgggtcagtacttggcggttgacccgaaaggcagagctgttatggttggagcctgtgagaaacagaaactagtgtacattttgaatagggatgtagctaataggttgactatttcgtcgccgttggaggcacataagtctcatactatagtgttttcgatttgtggggttgattgtgggtttgataatcctgtatttgctgccattgagctggattattccgagttggatcaggattcgagtggggaggtggctcggaagtatgtgactttctatgagcttgatttggggcttaaccatgtgtgttggaagtggtctgatcaggttgatgatggggcgaatttgctggttatggtgccgggaggtggggatgggccgagtggagtgttggtttgtgcagaaaattttgtgatttataagaatcagggacagggggatgtgagggctgtgattcctaggcgtgctgatttgcctgcgcagcgtgggactgagtatggggatatattcaaggtgactttggagcataatgatgatgttgtctcggaattaaagatcaagtactttgatacaatcccagtcacaacttcaatgtgtgtgttgaattcgcaggttttgtttgctgcttcggagtttgggaatcacgctttgtatcagttccaggcaataggcgaagatcctgatgtggagtcctcctcagctttgttcatggaaactgaagaggatttccagccattgtgtttccaacctagaaaacttaagaaccttgttgggattgatctggttgagagcttgatgccgataacagacatgaaggtctctaatctgtttgaagaagaaacacctcaaatatttacgctttgtggccagggtcctcgttcatctctcaggatactaagacctggtttggctatcagtgagatggctgtgtcagagcttcctggcataccgagtgctgtctggacagtgaaaaagaaggtgactgatgagtttgatgcatacattgtggtgtcatttgcaaacgctactcttgtattttcaattggtgagacaatcgaagaagttattgacagtggttttcttgatactaccccttcacttgccgtgtctttgataggtgatgatgctctcatgcaagttcacccaaatggcattaggcatattagggaaggtggacatatcaatgaatggagaactcctggaaagagaacgattataatggttggctctaatagacttcaggtggtcattgctttgagtggaggagaacttatatactttgatgttgatatgactggtcaactggtggaggttaagaagcatgaattgtctggagatgtagcttgtctggacattgccccagtacctgaagggagacaaagatctcgtttccttgcagttggctcatatgacaacacgattcgtattttgtctttggatcctgatgactgtatgcagattctgagtgttcaaagtgtctcttcaattccagaatctctcctctttcttgaggctcaggcatcagttagtggtgaggatggtgcggatcatcctgccaaccttttcctttatgccggtctacgaactgggattttgttcagaacagtggtggatatggtgacaggtcagctttctgattcccattctcgattcttaggactaagagctcctaagctattttctattaatataagaggcaagcatgccatgctttgtttgtcatgtcggccctggcttggttatattcatcaaggacattttctgttaacaccactatcgtatgagactattgaatatgtggcctcattttcatctgatcaatgtgtggaaggtgtagttgctgttgctggcagttctttgagggttttaactattgaaagattgggagaaacatttaatgaaactgtgattcctctgaggtatacccctagaaagtttgtggttcaagtgaaacgaaagcttttggtaattattgaaagtgatcaaggagcattcacagcagaagagcgtaaaactgcaaaaaggaaaactaggaaggatgttgatgaagatttctctccaccaaggaagcgtaggaacactagtagcaatggtggtgcagatctttctccaccaaaggagtgctttgaggctgcagaaataggtgaaaaaagaaatggtaatgtggagcagatggaaaatgatgataatgaggatgatcccctctctgatgagcactatggctatcccaaggcagagtctgacaaatgggtttcttgcattagagttcttgacccaaagacagcaactacaacttgtttgctggaactcgataacgaagctgcaatcagtgtatgtacagtgaattttcatgataacgccggcctggttggggcagctcctccgaaggagtatggtacgcttttggctgttggaaccacaaagggacttcaattttggcccaagaaaagtataaccggaggatttattcatatatatcgatttcttgatgatggaaagtcccttgaacttttgcacaaaacagaagtggatggtgttcctcttgctttatgtcagtttcagggaaggttactagcagggataggatcagtgctcagactatatgatttggggagaaaaagattgcttaggaaatgtgagaataagctgtttcccaacaatattgtatccattcatacctatcgtgatcgaatatatgtaggtgacattcaggagtcattccactactgcaagtataggcgggatgagaatcagctgtatatatttgctgatgatcgtgttccaagatggctgacagcatcgttccatattgattttgacacgatggcaggtgcggacaagtttgggaatgtgtactttgtgcggttaccacaggatgtttcagatgggatagaagaagatccaacaggtgggaggataaaatggaagcaggggaagttgaatggtgctccaaacaaagtgaaggagatcgtgcagtttcatgttggcgatgtagtcagctgcttgcagaaggcatctctcattccaggtggtggtgagtgcatcatttacgggacagtgatgggtagcttgggtgcattgtttgcattcacttcccgtgatgacgttgtcttcttttctcacctggagatgcatatgaggcaggaacatccacccttgtgtgagagagatcacatggcttatagatcagcttatttcccggttaaggatgtgattgatggagatctttgcgagcagtacccaacactgcctatggatgtacagaggaaaattgcagtcgagttggataggactcctggagagatactaaagaaactcaaggaaattcgaaataagatcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1228

Amino Acids

136.29

Weight (kDa)

5.57

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	762, 1559
AarI	CACCTGC	1 cut(s)	3161
AasI	GACNNNNNNGTC	3 cut(s)	230, 460, 1157
Acc16I	TGCGCA	1 cut(s)	822
Acc36I	ACCTGC	2 cut(s)	943, 3161
AccB1I	GGYRCC	2 cut(s)	176, 700
AccB7I	CCANNNNNTGG	2 cut(s)	3251, 3374
AccI	GTMKAC	2 cut(s)	1921, 2264
AccII	CGCG	2 cut(s)	30, 32
AciI	CCGC	8 cut(s)	57, 124, 135, 362, 1886, 3082, 3176, 3205
AclWI	GGATC	9 cut(s)	139, 582, 1013, 1775, 1788, 1896, 2534, 2935, 3236
AcoI	YGGCCR	2 cut(s)	250, 1207
AcsI	RAATTY	7 cut(s)	168, 300, 685, 748, 946, 2686, 3666
AcuI	CTGAAG	3 cut(s)	1080, 1565, 1731
AcyI	GRCGYC	2 cut(s)	132, 177
AfaI	GTAC	9 cut(s)	356, 422, 905, 1707, 2680, 2740, 3197, 3581, 3603
AfiI	CCNNNNNNNGG	6 cut(s)	710, 2078, 2713, 3251, 3374, 3547
AflII	CTTAAG	1 cut(s)	1100
AhlI	ACTAGT	2 cut(s)	415, 2423
AleI	CACNNNNGTG	1 cut(s)	3499
Alw21I	GWGCWC	4 cut(s)	2011, 2559, 2937, 3292
AlwI	GGATC	9 cut(s)	139, 582, 1013, 1775, 1788, 1896, 2534, 2935, 3236
AlwNI	CAGNNNCTG	3 cut(s)	1709, 1804, 2582
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	7 cut(s)	250, 719, 1207, 2069, 2142, 2704, 2780
ApeKI	GCWGC	7 cut(s)	545, 823, 965, 2474, 2663, 2717, 3342
ApoI	RAATTY	7 cut(s)	168, 300, 685, 748, 946, 2686, 3666
ArsI	GACNNNNNNTTYG	2 cut(s)	2760, 2792
AseI	ATTAAT	1 cut(s)	2028
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	5 cut(s)	30, 32, 50, 179, 823
AspS9I	GGNCC	4 cut(s)	719, 1214, 2070, 2781
AsuC2I	CCSGG	4 cut(s)	328, 348, 705, 3542
AsuII	TTCGAA	1 cut(s)	3670
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	1214
AvrII	CCTAGG	1 cut(s)	800
BalI	TGGCCA	1 cut(s)	1209
BamHI	GGATCC	1 cut(s)	1780
BanI	GGYRCC	2 cut(s)	176, 700
BanII	GRGCYC	1 cut(s)	2011
BbsI	GAAGAC	1 cut(s)	3445
Bbv12I	GWGCWC	4 cut(s)	2011, 2559, 2937, 3292
BbvCI	CCTCAGC	1 cut(s)	1039
BbvI	GCAGC	7 cut(s)	532, 835, 952, 2461, 2650, 2729, 3329
BceAI	ACGGC	3 cut(s)	77, 451, 1430
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciVI	GTATCC	2 cut(s)	1227, 3019
BclI	TGATCA	3 cut(s)	664, 2158, 2323
BcnI	CCSGG	4 cut(s)	328, 348, 705, 3542
BcuI	ACTAGT	2 cut(s)	415, 2423
BfaI	CTAG	8 cut(s)	266, 416, 801, 1092, 2271, 2373, 2424, 2915
BfmI	CTRYAG	3 cut(s)	10, 492, 2475
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	1100
BfuAI	ACCTGC	2 cut(s)	943, 3161
BfuI	GTATCC	2 cut(s)	1227, 3019
BglII	AGATCT	3 cut(s)	1724, 2443, 3565
BisI	GCNGC	9 cut(s)	58, 135, 546, 824, 966, 2475, 2664, 2718, 3343
BlnI	CCTAGG	1 cut(s)	800
BlsI	GCNGC	9 cut(s)	59, 136, 547, 825, 967, 2476, 2665, 2719, 3344
BmcAI	AGTACT	2 cut(s)	356, 905
Bme18I	GGWCC	1 cut(s)	1214
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	4 cut(s)	719, 1214, 2070, 2781
BmiI	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1215, 1782, 2758
BmrI	ACTGGG	3 cut(s)	914, 1697, 1938
BmsI	GCATC	8 cut(s)	1128, 1327, 1456, 1871, 3149, 3365, 3393, 3462
BmuI	ACTGGG	3 cut(s)	914, 1697, 1938
BpiI	GAAGAC	1 cut(s)	3445
BplI	GAGNNNNNCTC	2 cut(s)	1022, 1054
BpmI	CTGGAG	4 cut(s)	8, 1695, 3488, 3660
Bpu10I	CCTNAGC	4 cut(s)	1039, 1857, 2013, 2969
Bpu14I	TTCGAA	1 cut(s)	3670
BpuEI	CTTGAG	2 cut(s)	1871, 3644
BpuMI	CCSGG	4 cut(s)	328, 348, 705, 3542
Bsa29I	ATCGAT	1 cut(s)	2821
BsaBI	GATNNNNATC	2 cut(s)	3090, 3564
BsaHI	GRCGYC	2 cut(s)	132, 177
BsaI	GGTCTC	3 cut(s)	305, 336, 1165
BsaJI	CCNNGG	6 cut(s)	100, 800, 1210, 2072, 2405, 2571
BsaWI	WCCGGW	1 cut(s)	2798
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	6 cut(s)	710, 2078, 2713, 3251, 3374, 3547
Bse118I	RCCGGY	4 cut(s)	137, 209, 1916, 2702
Bse1I	ACTGG	5 cut(s)	920, 1642, 1650, 1703, 1933
Bse3DI	GCAATG	3 cut(s)	1590, 1695, 2437
Bse8I	GATNNNNATC	2 cut(s)	3090, 3564
BseCI	ATCGAT	1 cut(s)	2821
BseDI	CCNNGG	6 cut(s)	100, 800, 1210, 2072, 2405, 2571
BseJI	GATNNNNATC	2 cut(s)	3090, 3564
BseLI	CCNNNNNNNGG	6 cut(s)	710, 2078, 2713, 3251, 3374, 3547
BseMI	GCAATG	3 cut(s)	1590, 1695, 2437
BseMII	CTCAG	7 cut(s)	825, 1053, 1243, 1796, 1871, 2249, 2950
BseNI	ACTGG	5 cut(s)	920, 1642, 1650, 1703, 1933
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	5 cut(s)	146, 1027, 1620, 1832, 2712
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	7 cut(s)	532, 835, 952, 2461, 2650, 2729, 3329
BsgI	GTGCAG	3 cut(s)	762, 2460, 3335
Bsh1236I	CGCG	2 cut(s)	30, 32
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	7 cut(s)	252, 721, 1209, 2071, 2144, 2706, 2782
BshNI	GGYRCC	2 cut(s)	176, 700
BshVI	ATCGAT	1 cut(s)	2821
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	4 cut(s)	2011, 2559, 2937, 3292
BsiHKCI	CYCGRG	1 cut(s)	99
BslFI	GGGAC	5 cut(s)	786, 844, 2781, 2827, 3409
BslI	CCNNNNNNNGG	6 cut(s)	710, 2078, 2713, 3251, 3374, 3547
BsmFI	GGGAC	5 cut(s)	786, 844, 2781, 2827, 3409
BsmI	GAATGC	2 cut(s)	2333, 3428
BsnI	GGCC	7 cut(s)	252, 721, 1209, 2071, 2144, 2706, 2782
Bso31I	GGTCTC	3 cut(s)	305, 336, 1165
BsoBI	CYCGRG	1 cut(s)	99
Bsp119I	TTCGAA	1 cut(s)	3670
Bsp1286I	GDGCHC	4 cut(s)	2011, 2559, 2937, 3292
Bsp1407I	TGTACA	3 cut(s)	420, 2678, 3601
BspACI	CCGC	8 cut(s)	57, 124, 135, 362, 1886, 3082, 3176, 3205
BspANI	GGCC	7 cut(s)	252, 721, 1209, 2071, 2144, 2706, 2782
BspCNI	CTCAG	7 cut(s)	826, 1052, 1242, 1797, 1870, 2250, 2949
BspDI	ATCGAT	1 cut(s)	2821
BspFNI	CGCG	2 cut(s)	30, 32
BspHI	TCATGA	1 cut(s)	2692
BspLI	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1215, 1782, 2758
BspMAI	CTGCAG	1 cut(s)	2479
BspMI	ACCTGC	2 cut(s)	943, 3161
BspPI	GGATC	9 cut(s)	139, 582, 1013, 1775, 1788, 1896, 2534, 2935, 3236
BspQI	GCTCTTC	1 cut(s)	2340
BspT104I	TTCGAA	1 cut(s)	3670
BspT107I	GGYRCC	2 cut(s)	176, 700
BspTI	CTTAAG	1 cut(s)	1100
BspTNI	GGTCTC	3 cut(s)	305, 336, 1165
BsrDI	GCAATG	3 cut(s)	1590, 1695, 2437
BsrFI	RCCGGY	4 cut(s)	137, 209, 1916, 2702
BsrGI	TGTACA	3 cut(s)	420, 2678, 3601
BsrI	ACTGG	5 cut(s)	920, 1642, 1650, 1703, 1933
BssAI	RCCGGY	4 cut(s)	137, 209, 1916, 2702
BssECI	CCNNGG	6 cut(s)	100, 800, 1210, 2072, 2405, 2571
BssHII	GCGCGC	1 cut(s)	28
BssNAI	GTATAC	1 cut(s)	2265
BssNI	GRCGYC	2 cut(s)	132, 177
BssT1I	CCWWGG	3 cut(s)	800, 2405, 2571
Bst1107I	GTATAC	1 cut(s)	2265
Bst4CI	ACNGT	8 cut(s)	14, 1309, 1415, 1793, 1948, 2248, 2683, 3400
Bst6I	CTCTTC	3 cut(s)	1056, 1828, 2340
BstACI	GRCGYC	2 cut(s)	132, 177
BstAFI	CTTAAG	1 cut(s)	1100
BstAPI	GCANNNNNTGC	3 cut(s)	45, 2050, 3425
BstAUI	TGTACA	3 cut(s)	420, 2678, 3601
BstBI	TTCGAA	1 cut(s)	3670
BstC8I	GCNNGC	9 cut(s)	30, 807, 819, 2042, 2046, 2191, 2704, 3347, 3575
BstEII	GGTNACC	1 cut(s)	3207
BstFNI	CGCG	2 cut(s)	30, 32
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	5 cut(s)	30, 32, 50, 179, 823
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	8 cut(s)	36, 45, 54, 823, 2050, 2339, 3425, 3481
BstNSI	RCATGY	1 cut(s)	2048
BstPI	GGTNACC	1 cut(s)	3207
BstSFI	CTRYAG	3 cut(s)	10, 492, 2475
BstUI	CGCG	2 cut(s)	30, 32
BstV1I	GCAGC	7 cut(s)	532, 835, 952, 2461, 2650, 2729, 3329
BstV2I	GAAGAC	1 cut(s)	3445
BstX2I	RGATCY	7 cut(s)	144, 1018, 1724, 1780, 2443, 3241, 3565
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	7 cut(s)	144, 1018, 1724, 1780, 2443, 3241, 3565
BstZ17I	GTATAC	1 cut(s)	2265
BstZI	CGGCCG	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	2821
BsuI	GTATCC	2 cut(s)	1227, 3019
BsuRI	GGCC	7 cut(s)	252, 721, 1209, 2071, 2144, 2706, 2782
BsuTUI	ATCGAT	1 cut(s)	2821
BtgZI	GCGATG	1 cut(s)	3345
BtsI	GCAGTG	1 cut(s)	3587
BtsIMutI	CAGTG	9 cut(s)	1264, 1314, 1420, 1953, 2677, 2688, 2937, 3405, 3587
BveI	ACCTGC	2 cut(s)	943, 3161
Cac8I	GCNNGC	9 cut(s)	30, 807, 819, 2042, 2046, 2191, 2704, 3347, 3575
CaiI	CAGNNNCTG	3 cut(s)	1709, 1804, 2582
CciI	TCATGA	1 cut(s)	2692
CfoI	GCGC	5 cut(s)	30, 32, 50, 179, 823
Cfr10I	RCCGGY	4 cut(s)	137, 209, 1916, 2702
Cfr13I	GGNCC	4 cut(s)	719, 1214, 2070, 2781
ClaI	ATCGAT	1 cut(s)	2821
CseI	GACGC	1 cut(s)	140
CsiI	ACCWGGT	1 cut(s)	1243
Csp6I	GTAC	9 cut(s)	355, 421, 904, 1706, 2679, 2739, 3196, 3580, 3602
CviQI	GTAC	9 cut(s)	355, 421, 904, 1706, 2679, 2739, 3196, 3580, 3602
DinI	GGCGCC	1 cut(s)	178
DrdI	GACNNNNNNGTC	3 cut(s)	230, 460, 1157
DseDI	GACNNNNNNGTC	3 cut(s)	230, 460, 1157
EaeI	YGGCCR	2 cut(s)	250, 1207
EagI	CGGCCG	1 cut(s)	250
Eam1104I	CTCTTC	3 cut(s)	1056, 1828, 2340
EarI	CTCTTC	3 cut(s)	1056, 1828, 2340
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	2009
EclXI	CGGCCG	1 cut(s)	250
Eco130I	CCWWGG	3 cut(s)	800, 2405, 2571
Eco24I	GRGCYC	1 cut(s)	2011
Eco31I	GGTCTC	3 cut(s)	305, 336, 1165
Eco47I	GGWCC	1 cut(s)	1214
Eco52I	CGGCCG	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	2009
Eco57I	CTGAAG	3 cut(s)	1080, 1565, 1731
Eco88I	CYCGRG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	3207
EcoICRI	GAGCTC	1 cut(s)	2009
EcoO109I	RGGNCCY	1 cut(s)	1214
EcoO65I	GGTNACC	1 cut(s)	3207
EcoRI	GAATTC	1 cut(s)	946
EcoT14I	CCWWGG	3 cut(s)	800, 2405, 2571
EcoT22I	ATGCAT	2 cut(s)	1342, 3477
EcoT38I	GRGCYC	1 cut(s)	2011
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	800, 2405, 2571
FalI	AAGNNNNNCTT	4 cut(s)	1807, 1839, 2450, 2482
FaqI	GGGAC	5 cut(s)	786, 844, 2781, 2827, 3409
FauI	CCCGC	1 cut(s)	3075
FauNDI	CATATG	2 cut(s)	1750, 3477
FbaI	TGATCA	3 cut(s)	664, 2158, 2323
FblI	GTMKAC	2 cut(s)	1921, 2264
Fnu4HI	GCNGC	9 cut(s)	58, 135, 546, 824, 966, 2475, 2664, 2718, 3343
FriOI	GRGCYC	1 cut(s)	2011
Fsp4HI	GCNGC	9 cut(s)	58, 135, 546, 824, 966, 2475, 2664, 2718, 3343
FspBI	CTAG	8 cut(s)	266, 416, 801, 1092, 2271, 2373, 2424, 2915
FspI	TGCGCA	1 cut(s)	822
GlaI	GCGC	5 cut(s)	29, 31, 49, 178, 822
GluI	GCNGC	9 cut(s)	58, 135, 546, 824, 966, 2475, 2664, 2718, 3343
GsuI	CTGGAG	4 cut(s)	8, 1695, 3488, 3660
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	7 cut(s)	252, 721, 1209, 2071, 2144, 2706, 2782
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	5 cut(s)	30, 32, 50, 179, 823
Hin1I	GRCGYC	2 cut(s)	132, 177
Hin6I	GCGC	5 cut(s)	28, 30, 48, 177, 821
HinP1I	GCGC	5 cut(s)	28, 30, 48, 177, 821
HincII	GTYRAC	4 cut(s)	367, 453, 1643, 2109
HindII	GTYRAC	4 cut(s)	367, 453, 1643, 2109
HindIII	AAGCTT	1 cut(s)	2300
HpaI	GTTAAC	1 cut(s)	2109
Hpy99I	CGWCG	5 cut(s)	37, 98, 134, 239, 466
HpyCH4III	ACNGT	8 cut(s)	14, 1309, 1415, 1793, 1948, 2248, 2683, 3400
HpyCH4IV	ACGT	1 cut(s)	3447
HpyF10VI	GCNNNNNNNGC	8 cut(s)	36, 45, 54, 823, 2050, 2339, 3425, 3481
HpySE526I	ACGT	1 cut(s)	3447
Hsp92I	GRCGYC	2 cut(s)	132, 177
HspAI	GCGC	5 cut(s)	28, 30, 48, 177, 821
KasI	GGCGCC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	2702
KroNI	GCCGGC	1 cut(s)	2704
Ksp22I	TGATCA	3 cut(s)	664, 2158, 2323
KspAI	GTTAAC	1 cut(s)	2109
LguI	GCTCTTC	1 cut(s)	2340
Lsp1109I	GCAGC	7 cut(s)	532, 835, 952, 2461, 2650, 2729, 3329
LweI	GCATC	8 cut(s)	1128, 1327, 1456, 1871, 3149, 3365, 3393, 3462
MabI	ACCWGGT	1 cut(s)	1243
MaeI	CTAG	8 cut(s)	266, 416, 801, 1092, 2271, 2373, 2424, 2915
MaeII	ACGT	1 cut(s)	3447
MaeIII	GTNAC	8 cut(s)	610, 856, 922, 1321, 1960, 2910, 3044, 3207
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	7 cut(s)	144, 1018, 1724, 1780, 2443, 3241, 3565
MhlI	GDGCHC	4 cut(s)	2011, 2559, 2937, 3292
MlsI	TGGCCA	1 cut(s)	1209
MluNI	TGGCCA	1 cut(s)	1209
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	5 cut(s)	145, 1040, 2588, 3065, 3628
MmeI	TCCRAC	8 cut(s)	373, 450, 552, 632, 1111, 2734, 3269, 3606
Mox20I	TGGCCA	1 cut(s)	1209
Mph1103I	ATGCAT	2 cut(s)	1342, 3477
MroNI	GCCGGC	1 cut(s)	2702
MscI	TGGCCA	1 cut(s)	1209
MslI	CAYNNNNRTG	5 cut(s)	873, 1349, 1488, 1524, 3499
Msp20I	TGGCCA	1 cut(s)	1209
MspA1I	CMGCKG	3 cut(s)	57, 3097, 3342
MspCI	CTTAAG	1 cut(s)	1100
MunI	CAATTG	1 cut(s)	1383
Mva1269I	GAATGC	2 cut(s)	2333, 3428
MvnI	CGCG	2 cut(s)	30, 32
MwoI	GCNNNNNNNGC	8 cut(s)	36, 45, 54, 823, 2050, 2339, 3425, 3481
NaeI	GCCGGC	1 cut(s)	2704
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	4 cut(s)	328, 348, 705, 3542
NdeI	CATATG	2 cut(s)	1750, 3477
NgoMIV	GCCGGC	1 cut(s)	2702
NlaIV	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1215, 1782, 2758
NmeAIII	GCCGAG	1 cut(s)	747
NmuCI	GTSAC	6 cut(s)	610, 856, 922, 1321, 1960, 3044
NsbI	TGCGCA	1 cut(s)	822
NsiI	ATGCAT	2 cut(s)	1342, 3477
NspI	RCATGY	1 cut(s)	2048
NspV	TTCGAA	1 cut(s)	3670
OliI	CACNNNNGTG	1 cut(s)	3499
PaeI	GCATGC	1 cut(s)	2048
PagI	TCATGA	1 cut(s)	2692
PaqCI	CACCTGC	1 cut(s)	3161
PauI	GCGCGC	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	2340
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	2333, 3428
PdiI	GCCGGC	1 cut(s)	2704
PflFI	GACNNNGTC	1 cut(s)	3449
PflMI	CCANNNNNTGG	2 cut(s)	3251, 3374
PfoI	TCCNGGA	2 cut(s)	1540, 3637
PkrI	GCNGC	9 cut(s)	59, 136, 547, 825, 967, 2476, 2665, 2719, 3344
PleI	GAGTC	5 cut(s)	145, 1039, 2587, 3064, 3628
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	5 cut(s)	145, 1039, 2587, 3064, 3628
PpuMI	RGGWCCY	1 cut(s)	1214
PshBI	ATTAAT	1 cut(s)	2028
PsiI	TTATAA	2 cut(s)	762, 1559
Psp124BI	GAGCTC	1 cut(s)	2011
Psp5II	RGGWCCY	1 cut(s)	1214
PspEI	GGTNACC	1 cut(s)	3207
PspN4I	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1215, 1782, 2758
PspPI	GGNCC	4 cut(s)	719, 1214, 2070, 2781
PspPPI	RGGWCCY	1 cut(s)	1214
PstI	CTGCAG	1 cut(s)	2479
PstNI	CAGNNNCTG	3 cut(s)	1709, 1804, 2582
PsuI	RGATCY	7 cut(s)	144, 1018, 1724, 1780, 2443, 3241, 3565
PsyI	GACNNNGTC	1 cut(s)	3449
PteI	GCGCGC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	3097, 3342
RsaI	GTAC	9 cut(s)	356, 422, 905, 1707, 2680, 2740, 3197, 3581, 3603
RsaNI	GTAC	9 cut(s)	355, 421, 904, 1706, 2679, 2739, 3196, 3580, 3602
RseI	CAYNNNNRTG	5 cut(s)	873, 1349, 1488, 1524, 3499
SacI	GAGCTC	1 cut(s)	2011
SapI	GCTCTTC	1 cut(s)	2340
SatI	GCNGC	9 cut(s)	58, 135, 546, 824, 966, 2475, 2664, 2718, 3343
Sau96I	GGNCC	4 cut(s)	719, 1214, 2070, 2781
ScaI	AGTACT	2 cut(s)	356, 905
SchI	GAGTC	5 cut(s)	145, 1040, 2588, 3065, 3628
SduI	GDGCHC	4 cut(s)	2011, 2559, 2937, 3292
SexAI	ACCWGGT	1 cut(s)	1243
SfaNI	GCATC	8 cut(s)	1128, 1327, 1456, 1871, 3149, 3365, 3393, 3462
SfcI	CTRYAG	3 cut(s)	10, 492, 2475
SfoI	GGCGCC	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	3670
SinI	GGWCC	1 cut(s)	1214
SmiMI	CAYNNNNRTG	5 cut(s)	873, 1349, 1488, 1524, 3499
SmlI	CTYRAG	3 cut(s)	1100, 1850, 3659
SmoI	CTYRAG	3 cut(s)	1100, 1850, 3659
SpeI	ACTAGT	2 cut(s)	415, 2423
SphI	GCATGC	1 cut(s)	2048
SsiI	CCGC	8 cut(s)	57, 124, 135, 362, 1886, 3082, 3176, 3205
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	2 cut(s)	1194, 3004
SspMI	CTAG	8 cut(s)	266, 416, 801, 1092, 2271, 2373, 2424, 2915
SstI	GAGCTC	1 cut(s)	2011
StyI	CCWWGG	3 cut(s)	800, 2405, 2571
TaaI	ACNGT	8 cut(s)	14, 1309, 1415, 1793, 1948, 2248, 2683, 3400
TaiI	ACGT	1 cut(s)	3450
TatI	WGTACW	6 cut(s)	354, 420, 903, 2678, 3195, 3601
TauI	GCSGC	2 cut(s)	60, 137
TscAI	CASTG	9 cut(s)	1264, 1314, 1420, 1953, 2677, 2688, 2937, 3405, 3594
TseFI	GTSAC	6 cut(s)	610, 856, 922, 1321, 1960, 3044
TseI	GCWGC	7 cut(s)	545, 823, 965, 2474, 2663, 2717, 3342
Tsp45I	GTSAC	6 cut(s)	610, 856, 922, 1321, 1960, 3044
TspGWI	ACGGA	2 cut(s)	151, 186
TspRI	CASTG	9 cut(s)	1264, 1314, 1420, 1953, 2677, 2688, 2937, 3405, 3594
Tth111I	GACNNNGTC	1 cut(s)	3449
Van91I	CCANNNNNTGG	2 cut(s)	3251, 3374
Vha464I	CTTAAG	1 cut(s)	1100
VpaK11BI	GGWCC	1 cut(s)	1214
VspI	ATTAAT	1 cut(s)	2028
XapI	RAATTY	7 cut(s)	168, 300, 685, 748, 946, 2686, 3666
XceI	RCATGY	1 cut(s)	2048
XmaJI	CCTAGG	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	1921, 2264
XspI	CTAG	8 cut(s)	266, 416, 801, 1092, 2271, 2373, 2424, 2915
ZrmI	AGTACT	2 cut(s)	356, 905
Zsp2I	ATGCAT	2 cut(s)	1342, 3477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.