Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010918.1

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3538

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3267 bp

tcccgaaaagactacattgtcgtcggctccgattccggccgaatcgtaatactagaatacaacaaagataagaatgtatttaataaaattcaccaagagaccttcggaaaatccgggtctcgccggattgttccgggtcagtacttggcggttgacccgaaaggcagagctgttatggttggagcctgtgagaaacagaaactagtgtacattttgaatagggatgtagctaataggttgactatttcgtcgccgttggaggcacataagtctcatactatagtgttttcgatttgtggggttgattgtgggtttgataatcctgtatttgctgccattgagctggattattccgagttggatcaggattcgagtggggaggttgctcggcagtatgtgactttctatgcgcttgatttggggcttaaccatgtgtgtaggaagaggtctgatcaggttgatgatggggcgagtttgctggttatggtgccgggaggcggggatgggccgagtggagtgttggtttgtgcagaaaattttgtgatttataagaatcagggacagggggatgtgagggctgtgattcctaggcgtgctgatttgcctgcgcagcgtgggactgagtatggggatatattcaaggtgactttggagcataatgatgatgttgtctcggaattaaagatcaagtactttgatacaatcccagtcacaacttcaatgtgtgtgttgaattcgcaggttttgtttgctgcttcggagtttgggaatcacgctttgtatcagttccaggcaataggcgaagatcctgatgtggagtcctcctcagctttgttcatggaaactgaagaggatttccagccattgtgtttccaacctagaaaacttaagaaccttgttgggattgatctggttgagagcttgatgccgataacagacatgaaggtctctaatctgtttgaagaagaaacacctcaaatatttacgctttgtggccagggtcctcgttcatctctcaggatactaagacctggtttggctatcagtgagatggctgtgtcagagcttcctggcataccgagtgctgtctggacagtgaaaaagaaggtgactgatgagtttgatgcatacattgtggtgtcatttgcaaacgctactcttgtattttcaattggtgagacaatcgaagaagttattgacagtggttttcttgatactaccccttcacttgccgtgtctttgataggtgatgatgctctcatgcaagttcacccaaatggcattaggcatattagggaaggtggacatatcaatgaatggagaactcctggaaagagaacgattataatggttggctctaatagacttcaggtggtcattgctttgagtggaggagaacttatatactttgatgttgatatgactggtcaactggtggaggttaagaagcatgaattgtctggagatgtagcttgtctggacattgccccagtacctgaagggagacaaagatctcgtttccttgcagttggctcatatgacaacacgattcgtattttgtctttggatcctgatgactgtatgcagattctgagtgttcaaagtgtctcttcaattccagaatctctcctctttcttgaggctcaggcatcagttagtggtgaggatggtgcggatcatcctgccaaccttttcctttatgccggtctacgaactgggattttgttcagaacagtggtggatatggtgacaggtgtagttgctgttgctggcagttctttgagggttttaactattgaaagattgggagaaacatttaatgaaactgtgattcctctgaggtatacccctagaaagtttgtggttcaagtgaaacgaaagcttttggtaattattgaaagtgatcaaggagcattcacagcagaagagcgtaaaactgcaaaaaggaaaactaggaaggatgttgatgaagatttctctccaccaaggaagcgtaggaacactagtagcaatggtggtgcagatctttctccaccaaaggagtgctttgaggctgcagaaataggtgaaaaaagaaatggtaatgtggagcagatggaaaatgatgataatgaggatgatcccctctctgatgagcactatggctatcccaaggcagagtctgacaaatgggtttcttgcattagagttcttgacccaaagacagcaactacaacttgtttgctggaactcgataacgaagctgcaatcagtgtatgtacagtgaattttcatgataacgccggcctggttggggcagctcctccgaaggagtatggtacgcttttggctgttggaaccacaaagggacttcaattttggcccaagaaaagtataaccggaggatttattcatatatatcgatttcttgatgatggaaagtcccttgaacttttgcacaaaacagaagtggatggtgttcctcttgctttatgtcagtttcagggaaggttactagcagggataggatcagtgctcagactatatgatttggggagaaaaagattgcttaggaaatgtgagaataagctgtttcccaacaatattgtatccattcatacctatcgtgatcgaatatatgtaggtgacattcaggagtcattccactactgcaagtataggcgggatgagaatcagctgtatatatttgctgatgatcgtgttccaagatggctgacagcatcgttccatattgattttgacacgatggcaggtgcggacaagtttgggaatgtgtactttgtgcggttaccacaggatgtttcagatgggatagaagaagatccaacaggtgggaggataaaatggaagcaggggaagttgaatggtgctccaaacaaagtgaaggagatcgtgcagtttcatgttggcgatgtagtcagctgcttgcagaaggcatctctcattccaggtggtggtgagtgcatcatttacgggacagtgatgggtagcttgggtgcattgtttgcattcacttcccgtgatgacgttgtcttcttttctcacctggagatgcatatgaggcaggaacatccacccttgtgtgagagagatcacatggcttatagatcagcttatttcccggttaaggatgtgattgatggagatctttgcgagcagtacccaacactgcctatggatgtacagaggaaaattgcagtcgagttggataggactcctggagagatactaaagaaactcaaggaaattcgaaataagatcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1088

Amino Acids

120.8

Weight (kDa)

5.36

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	549, 1346
AarI	CACCTGC	1 cut(s)	2741
AasI	GACNNNNNNGTC	3 cut(s)	17, 247, 944
Acc16I	TGCGCA	1 cut(s)	609
Acc36I	ACCTGC	2 cut(s)	730, 2741
AccB1I	GGYRCC	1 cut(s)	487
AccB7I	CCANNNNNTGG	2 cut(s)	2831, 2954
AccI	GTMKAC	2 cut(s)	1708, 1844
AciI	CCGC	6 cut(s)	149, 498, 1673, 2662, 2756, 2785
AclWI	GGATC	8 cut(s)	369, 800, 1562, 1575, 1683, 2114, 2515, 2816
AcoI	YGGCCR	2 cut(s)	37, 994
AcsI	RAATTY	5 cut(s)	87, 535, 733, 2266, 3246
AcuI	CTGAAG	3 cut(s)	867, 1352, 1518
AfaI	GTAC	9 cut(s)	143, 209, 692, 1494, 2260, 2320, 2777, 3161, 3183
AfiI	CCNNNNNNNGG	5 cut(s)	497, 2293, 2831, 2954, 3127
AflII	CTTAAG	1 cut(s)	887
AhlI	ACTAGT	2 cut(s)	202, 2003
AjnI	CCWGG	9 cut(s)	789, 996, 1030, 1069, 1327, 2286, 2947, 3045, 3217
AleI	CACNNNNGTG	1 cut(s)	3079
Alw21I	GWGCWC	3 cut(s)	2139, 2517, 2872
Alw26I	GTCTC	8 cut(s)	92, 123, 276, 676, 952, 1172, 1498, 1612
AlwI	GGATC	8 cut(s)	369, 800, 1562, 1575, 1683, 2114, 2515, 2816
AlwNI	CAGNNNCTG	3 cut(s)	1496, 1591, 2162
AoxI	GGCC	5 cut(s)	37, 506, 994, 2284, 2360
ApeKI	GCWGC	7 cut(s)	332, 610, 752, 2054, 2243, 2297, 2922
ApoI	RAATTY	5 cut(s)	87, 535, 733, 2266, 3246
ArsI	GACNNNNNNTTYG	2 cut(s)	2340, 2372
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	412, 610
AspS9I	GGNCC	3 cut(s)	506, 1001, 2361
AsuC2I	CCSGG	4 cut(s)	115, 135, 492, 3122
AsuII	TTCGAA	1 cut(s)	3250
AvaII	GGWCC	1 cut(s)	1001
AvrII	CCTAGG	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	996
BamHI	GGATCC	1 cut(s)	1567
BanI	GGYRCC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	3025
Bbv12I	GWGCWC	3 cut(s)	2139, 2517, 2872
BbvCI	CCTCAGC	1 cut(s)	826
BbvI	GCAGC	7 cut(s)	319, 622, 739, 2041, 2230, 2309, 2909
BceAI	ACGGC	2 cut(s)	238, 1217
BciT130I	CCWGG	9 cut(s)	791, 998, 1032, 1071, 1329, 2288, 2949, 3047, 3219
BciVI	GTATCC	2 cut(s)	1014, 2599
BclI	TGATCA	2 cut(s)	451, 1903
BcnI	CCSGG	4 cut(s)	115, 135, 492, 3122
BcoDI	GTCTC	8 cut(s)	92, 123, 276, 676, 952, 1172, 1498, 1612
BcuI	ACTAGT	2 cut(s)	202, 2003
BfaI	CTAG	8 cut(s)	53, 203, 588, 879, 1851, 1953, 2004, 2495
BfmI	CTRYAG	2 cut(s)	279, 2055
BfrI	CTTAAG	1 cut(s)	887
BfuAI	ACCTGC	2 cut(s)	730, 2741
BfuI	GTATCC	2 cut(s)	1014, 2599
BglII	AGATCT	3 cut(s)	1511, 2023, 3145
BisI	GCNGC	7 cut(s)	333, 611, 753, 2055, 2244, 2298, 2923
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	7 cut(s)	334, 612, 754, 2056, 2245, 2299, 2924
BmcAI	AGTACT	2 cut(s)	143, 692
Bme18I	GGWCC	1 cut(s)	1001
BmgT120I	GGNCC	3 cut(s)	506, 1001, 2361
BmiI	GGNNCC	6 cut(s)	28, 184, 489, 1002, 1569, 2338
BmrI	ACTGGG	3 cut(s)	701, 1484, 1725
BmsI	GCATC	8 cut(s)	915, 1114, 1243, 1658, 2729, 2945, 2973, 3042
BmuI	ACTGGG	3 cut(s)	701, 1484, 1725
BpiI	GAAGAC	1 cut(s)	3025
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	3 cut(s)	1482, 3068, 3240
Bpu10I	CCTNAGC	3 cut(s)	826, 1644, 2549
Bpu14I	TTCGAA	1 cut(s)	3250
BpuEI	CTTGAG	2 cut(s)	1658, 3224
BpuMI	CCSGG	4 cut(s)	115, 135, 492, 3122
Bsa29I	ATCGAT	1 cut(s)	2401
BsaBI	GATNNNNATC	2 cut(s)	2670, 3144
BsaI	GGTCTC	3 cut(s)	92, 123, 952
BsaJI	CCNNGG	4 cut(s)	587, 997, 1985, 2151
BsaWI	WCCGGW	1 cut(s)	2378
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	5 cut(s)	497, 2293, 2831, 2954, 3127
Bse118I	RCCGGY	2 cut(s)	1703, 2282
Bse1I	ACTGG	5 cut(s)	707, 1429, 1437, 1490, 1720
Bse3DI	GCAATG	3 cut(s)	1377, 1482, 2017
Bse8I	GATNNNNATC	2 cut(s)	2670, 3144
BseBI	CCWGG	9 cut(s)	791, 998, 1032, 1071, 1329, 2288, 2949, 3047, 3219
BseCI	ATCGAT	1 cut(s)	2401
BseDI	CCNNGG	4 cut(s)	587, 997, 1985, 2151
BseJI	GATNNNNATC	2 cut(s)	2670, 3144
BseLI	CCNNNNNNNGG	5 cut(s)	497, 2293, 2831, 2954, 3127
BseMI	GCAATG	3 cut(s)	1377, 1482, 2017
BseMII	CTCAG	7 cut(s)	612, 840, 1030, 1583, 1658, 1829, 2530
BseNI	ACTGG	5 cut(s)	707, 1429, 1437, 1490, 1720
BseRI	GAGGAG	4 cut(s)	814, 1407, 1619, 2292
BseX3I	CGGCCG	1 cut(s)	37
BseXI	GCAGC	7 cut(s)	319, 622, 739, 2041, 2230, 2309, 2909
BsgI	GTGCAG	3 cut(s)	549, 2040, 2915
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	5 cut(s)	39, 508, 996, 2286, 2362
BshNI	GGYRCC	1 cut(s)	487
BshVI	ATCGAT	1 cut(s)	2401
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	3 cut(s)	2139, 2517, 2872
BsiSI	CCGG	9 cut(s)	36, 114, 124, 134, 491, 1704, 2283, 2379, 3122
BslFI	GGGAC	5 cut(s)	573, 631, 2361, 2407, 2989
BslI	CCNNNNNNNGG	5 cut(s)	497, 2293, 2831, 2954, 3127
BsmAI	GTCTC	8 cut(s)	92, 123, 276, 676, 952, 1172, 1498, 1612
BsmFI	GGGAC	5 cut(s)	573, 631, 2361, 2407, 2989
BsmI	GAATGC	2 cut(s)	1913, 3008
BsnI	GGCC	5 cut(s)	39, 508, 996, 2286, 2362
Bso31I	GGTCTC	3 cut(s)	92, 123, 952
Bsp119I	TTCGAA	1 cut(s)	3250
Bsp1286I	GDGCHC	3 cut(s)	2139, 2517, 2872
Bsp1407I	TGTACA	3 cut(s)	207, 2258, 3181
BspACI	CCGC	6 cut(s)	149, 498, 1673, 2662, 2756, 2785
BspANI	GGCC	5 cut(s)	39, 508, 996, 2286, 2362
BspCNI	CTCAG	7 cut(s)	613, 839, 1029, 1584, 1657, 1830, 2529
BspDI	ATCGAT	1 cut(s)	2401
BspHI	TCATGA	1 cut(s)	2272
BspLI	GGNNCC	6 cut(s)	28, 184, 489, 1002, 1569, 2338
BspMAI	CTGCAG	1 cut(s)	2059
BspMI	ACCTGC	2 cut(s)	730, 2741
BspPI	GGATC	8 cut(s)	369, 800, 1562, 1575, 1683, 2114, 2515, 2816
BspQI	GCTCTTC	1 cut(s)	1920
BspT104I	TTCGAA	1 cut(s)	3250
BspT107I	GGYRCC	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	887
BspTNI	GGTCTC	3 cut(s)	92, 123, 952
BsrDI	GCAATG	3 cut(s)	1377, 1482, 2017
BsrFI	RCCGGY	2 cut(s)	1703, 2282
BsrGI	TGTACA	3 cut(s)	207, 2258, 3181
BsrI	ACTGG	5 cut(s)	707, 1429, 1437, 1490, 1720
BssAI	RCCGGY	2 cut(s)	1703, 2282
BssECI	CCNNGG	4 cut(s)	587, 997, 1985, 2151
BssNAI	GTATAC	1 cut(s)	1845
BssT1I	CCWWGG	3 cut(s)	587, 1985, 2151
Bst1107I	GTATAC	1 cut(s)	1845
Bst2UI	CCWGG	9 cut(s)	791, 998, 1032, 1071, 1329, 2288, 2949, 3047, 3219
Bst4CI	ACNGT	7 cut(s)	1096, 1202, 1580, 1735, 1828, 2263, 2980
Bst6I	CTCTTC	4 cut(s)	437, 843, 1615, 1920
BstAFI	CTTAAG	1 cut(s)	887
BstAPI	GCANNNNNTGC	1 cut(s)	3005
BstAUI	TGTACA	3 cut(s)	207, 2258, 3181
BstBI	TTCGAA	1 cut(s)	3250
BstC8I	GCNNGC	6 cut(s)	594, 606, 1771, 2284, 2927, 3155
BstDEI	CTNAG	9 cut(s)	621, 826, 1016, 1025, 1592, 1644, 1838, 2516, 2549
BstEII	GGTNACC	1 cut(s)	2787
BstHHI	GCGC	2 cut(s)	412, 610
BstMAI	GTCTC	8 cut(s)	92, 123, 276, 676, 952, 1172, 1498, 1612
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	610, 1919, 3005, 3061
BstNI	CCWGG	9 cut(s)	791, 998, 1032, 1071, 1329, 2288, 2949, 3047, 3219
BstPI	GGTNACC	1 cut(s)	2787
BstSFI	CTRYAG	2 cut(s)	279, 2055
BstV1I	GCAGC	7 cut(s)	319, 622, 739, 2041, 2230, 2309, 2909
BstV2I	GAAGAC	1 cut(s)	3025
BstX2I	RGATCY	6 cut(s)	805, 1511, 1567, 2023, 2821, 3145
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstYI	RGATCY	6 cut(s)	805, 1511, 1567, 2023, 2821, 3145
BstZ17I	GTATAC	1 cut(s)	1845
BstZI	CGGCCG	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	2401
BsuI	GTATCC	2 cut(s)	1014, 2599
BsuRI	GGCC	5 cut(s)	39, 508, 996, 2286, 2362
BsuTUI	ATCGAT	1 cut(s)	2401
BtgZI	GCGATG	1 cut(s)	2925
BtsI	GCAGTG	1 cut(s)	3167
BtsIMutI	CAGTG	9 cut(s)	1051, 1101, 1207, 1740, 2257, 2268, 2517, 2985, 3167
BveI	ACCTGC	2 cut(s)	730, 2741
Cac8I	GCNNGC	6 cut(s)	594, 606, 1771, 2284, 2927, 3155
CaiI	CAGNNNCTG	3 cut(s)	1496, 1591, 2162
CciI	TCATGA	1 cut(s)	2272
CfoI	GCGC	2 cut(s)	412, 610
Cfr10I	RCCGGY	2 cut(s)	1703, 2282
Cfr13I	GGNCC	3 cut(s)	506, 1001, 2361
ClaI	ATCGAT	1 cut(s)	2401
CsiI	ACCWGGT	1 cut(s)	1030
Csp6I	GTAC	9 cut(s)	142, 208, 691, 1493, 2259, 2319, 2776, 3160, 3182
CviAII	CATG	8 cut(s)	431, 838, 940, 1261, 1451, 2273, 2903, 3097
CviQI	GTAC	9 cut(s)	142, 208, 691, 1493, 2259, 2319, 2776, 3160, 3182
DdeI	CTNAG	9 cut(s)	621, 826, 1016, 1025, 1592, 1644, 1838, 2516, 2549
DrdI	GACNNNNNNGTC	3 cut(s)	17, 247, 944
DseDI	GACNNNNNNGTC	3 cut(s)	17, 247, 944
EaeI	YGGCCR	2 cut(s)	37, 994
EagI	CGGCCG	1 cut(s)	37
Eam1104I	CTCTTC	4 cut(s)	437, 843, 1615, 1920
EarI	CTCTTC	4 cut(s)	437, 843, 1615, 1920
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	587, 1985, 2151
Eco31I	GGTCTC	3 cut(s)	92, 123, 952
Eco47I	GGWCC	1 cut(s)	1001
Eco52I	CGGCCG	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	867, 1352, 1518
Eco91I	GGTNACC	1 cut(s)	2787
EcoO109I	RGGNCCY	1 cut(s)	1001
EcoO65I	GGTNACC	1 cut(s)	2787
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	9 cut(s)	789, 996, 1030, 1069, 1327, 2286, 2947, 3045, 3217
EcoT14I	CCWWGG	3 cut(s)	587, 1985, 2151
EcoT22I	ATGCAT	2 cut(s)	1129, 3057
ErhI	CCWWGG	3 cut(s)	587, 1985, 2151
FaeI	CATG	8 cut(s)	434, 841, 943, 1264, 1454, 2276, 2906, 3100
FalI	AAGNNNNNCTT	4 cut(s)	1594, 1626, 2030, 2062
FaqI	GGGAC	5 cut(s)	573, 631, 2361, 2407, 2989
FatI	CATG	8 cut(s)	430, 837, 939, 1260, 1450, 2272, 2902, 3096
FauI	CCCGC	2 cut(s)	491, 2655
FauNDI	CATATG	2 cut(s)	1537, 3057
FbaI	TGATCA	2 cut(s)	451, 1903
FblI	GTMKAC	2 cut(s)	1708, 1844
Fnu4HI	GCNGC	7 cut(s)	333, 611, 753, 2055, 2244, 2298, 2923
Fsp4HI	GCNGC	7 cut(s)	333, 611, 753, 2055, 2244, 2298, 2923
FspBI	CTAG	8 cut(s)	53, 203, 588, 879, 1851, 1953, 2004, 2495
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	2 cut(s)	411, 609
GluI	GCNGC	7 cut(s)	333, 611, 753, 2055, 2244, 2298, 2923
GsuI	CTGGAG	3 cut(s)	1482, 3068, 3240
HaeIII	GGCC	5 cut(s)	39, 508, 996, 2286, 2362
HapII	CCGG	9 cut(s)	36, 114, 124, 134, 491, 1704, 2283, 2379, 3122
HhaI	GCGC	2 cut(s)	412, 610
Hin1II	CATG	8 cut(s)	434, 841, 943, 1264, 1454, 2276, 2906, 3100
Hin6I	GCGC	2 cut(s)	410, 608
HinP1I	GCGC	2 cut(s)	410, 608
HincII	GTYRAC	3 cut(s)	154, 240, 1430
HindII	GTYRAC	3 cut(s)	154, 240, 1430
HindIII	AAGCTT	1 cut(s)	1880
HpaII	CCGG	9 cut(s)	36, 114, 124, 134, 491, 1704, 2283, 2379, 3122
Hpy166II	GTNNAC	9 cut(s)	154, 208, 240, 1270, 1304, 1430, 1709, 1845, 2776
Hpy8I	GTNNAC	9 cut(s)	154, 208, 240, 1270, 1304, 1430, 1709, 1845, 2776
Hpy99I	CGWCG	2 cut(s)	26, 253
HpyCH4III	ACNGT	7 cut(s)	1096, 1202, 1580, 1735, 1828, 2263, 2980
HpyCH4IV	ACGT	1 cut(s)	3027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	610, 1919, 3005, 3061
HpyF3I	CTNAG	9 cut(s)	621, 826, 1016, 1025, 1592, 1644, 1838, 2516, 2549
HpySE526I	ACGT	1 cut(s)	3027
Hsp92II	CATG	8 cut(s)	434, 841, 943, 1264, 1454, 2276, 2906, 3100
HspAI	GCGC	2 cut(s)	410, 608
KroI	GCCGGC	1 cut(s)	2282
KroNI	GCCGGC	1 cut(s)	2284
Ksp22I	TGATCA	2 cut(s)	451, 1903
LguI	GCTCTTC	1 cut(s)	1920
LmnI	GCTCC	7 cut(s)	32, 182, 652, 1910, 2089, 2305, 2875
Lsp1109I	GCAGC	7 cut(s)	319, 622, 739, 2041, 2230, 2309, 2909
LweI	GCATC	8 cut(s)	915, 1114, 1243, 1658, 2729, 2945, 2973, 3042
MabI	ACCWGGT	1 cut(s)	1030
MaeI	CTAG	8 cut(s)	53, 203, 588, 879, 1851, 1953, 2004, 2495
MaeII	ACGT	1 cut(s)	3027
MaeIII	GTNAC	8 cut(s)	397, 643, 709, 1108, 1747, 2490, 2624, 2787
MfeI	CAATTG	1 cut(s)	1170
MflI	RGATCY	6 cut(s)	805, 1511, 1567, 2023, 2821, 3145
MhlI	GDGCHC	3 cut(s)	2139, 2517, 2872
MlsI	TGGCCA	1 cut(s)	996
MluNI	TGGCCA	1 cut(s)	996
MlyI	GAGTC	4 cut(s)	827, 2168, 2645, 3208
MmeI	TCCRAC	7 cut(s)	160, 237, 339, 898, 2314, 2849, 3186
Mox20I	TGGCCA	1 cut(s)	996
Mph1103I	ATGCAT	2 cut(s)	1129, 3057
MroNI	GCCGGC	1 cut(s)	2282
MscI	TGGCCA	1 cut(s)	996
MseI	TTAA	9 cut(s)	81, 426, 680, 888, 1443, 1790, 1818, 3126, 3265
MslI	CAYNNNNRTG	5 cut(s)	660, 1136, 1275, 1311, 3079
Msp20I	TGGCCA	1 cut(s)	996
MspA1I	CMGCKG	2 cut(s)	2677, 2922
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	9 cut(s)	36, 114, 124, 134, 491, 1704, 2283, 2379, 3122
MunI	CAATTG	1 cut(s)	1170
Mva1269I	GAATGC	2 cut(s)	1913, 3008
MvaI	CCWGG	9 cut(s)	791, 998, 1032, 1071, 1329, 2288, 2949, 3047, 3219
MwoI	GCNNNNNNNGC	4 cut(s)	610, 1919, 3005, 3061
NaeI	GCCGGC	1 cut(s)	2284
NciI	CCSGG	4 cut(s)	115, 135, 492, 3122
NdeI	CATATG	2 cut(s)	1537, 3057
NgoMIV	GCCGGC	1 cut(s)	2282
NlaIII	CATG	8 cut(s)	434, 841, 943, 1264, 1454, 2276, 2906, 3100
NlaIV	GGNNCC	6 cut(s)	28, 184, 489, 1002, 1569, 2338
NmeAIII	GCCGAG	2 cut(s)	367, 534
NmuCI	GTSAC	6 cut(s)	397, 643, 709, 1108, 1747, 2624
NsbI	TGCGCA	1 cut(s)	609
NsiI	ATGCAT	2 cut(s)	1129, 3057
NspV	TTCGAA	1 cut(s)	3250
OliI	CACNNNNGTG	1 cut(s)	3079
PagI	TCATGA	1 cut(s)	2272
PaqCI	CACCTGC	1 cut(s)	2741
PciSI	GCTCTTC	1 cut(s)	1920
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	2 cut(s)	1913, 3008
PdiI	GCCGGC	1 cut(s)	2284
PflFI	GACNNNGTC	1 cut(s)	3029
PflMI	CCANNNNNTGG	2 cut(s)	2831, 2954
PfoI	TCCNGGA	2 cut(s)	1327, 3217
PkrI	GCNGC	7 cut(s)	334, 612, 754, 2056, 2245, 2299, 2924
PleI	GAGTC	4 cut(s)	826, 2167, 2644, 3208
PpsI	GAGTC	4 cut(s)	826, 2167, 2644, 3208
PpuMI	RGGWCCY	1 cut(s)	1001
PsiI	TTATAA	2 cut(s)	549, 1346
Psp5II	RGGWCCY	1 cut(s)	1001
Psp6I	CCWGG	9 cut(s)	789, 996, 1030, 1069, 1327, 2286, 2947, 3045, 3217
PspEI	GGTNACC	1 cut(s)	2787
PspGI	CCWGG	9 cut(s)	789, 996, 1030, 1069, 1327, 2286, 2947, 3045, 3217
PspN4I	GGNNCC	6 cut(s)	28, 184, 489, 1002, 1569, 2338
PspPI	GGNCC	3 cut(s)	506, 1001, 2361
PspPPI	RGGWCCY	1 cut(s)	1001
PstI	CTGCAG	1 cut(s)	2059
PstNI	CAGNNNCTG	3 cut(s)	1496, 1591, 2162
PsuI	RGATCY	6 cut(s)	805, 1511, 1567, 2023, 2821, 3145
PsyI	GACNNNGTC	1 cut(s)	3029
PvuII	CAGCTG	2 cut(s)	2677, 2922
RsaI	GTAC	9 cut(s)	143, 209, 692, 1494, 2260, 2320, 2777, 3161, 3183
RsaNI	GTAC	9 cut(s)	142, 208, 691, 1493, 2259, 2319, 2776, 3160, 3182
RseI	CAYNNNNRTG	5 cut(s)	660, 1136, 1275, 1311, 3079
SapI	GCTCTTC	1 cut(s)	1920
SaqAI	TTAA	9 cut(s)	81, 426, 680, 888, 1443, 1790, 1818, 3126, 3265
SatI	GCNGC	7 cut(s)	333, 611, 753, 2055, 2244, 2298, 2923
Sau96I	GGNCC	3 cut(s)	506, 1001, 2361
ScaI	AGTACT	2 cut(s)	143, 692
SchI	GAGTC	4 cut(s)	827, 2168, 2645, 3208
SduI	GDGCHC	3 cut(s)	2139, 2517, 2872
SexAI	ACCWGGT	1 cut(s)	1030
SfaNI	GCATC	8 cut(s)	915, 1114, 1243, 1658, 2729, 2945, 2973, 3042
SfcI	CTRYAG	2 cut(s)	279, 2055
SfuI	TTCGAA	1 cut(s)	3250
SinI	GGWCC	1 cut(s)	1001
SmiMI	CAYNNNNRTG	5 cut(s)	660, 1136, 1275, 1311, 3079
SmlI	CTYRAG	3 cut(s)	887, 1637, 3239
SmoI	CTYRAG	3 cut(s)	887, 1637, 3239
SpeI	ACTAGT	2 cut(s)	202, 2003
SsiI	CCGC	6 cut(s)	149, 498, 1673, 2662, 2756, 2785
SspI	AATATT	2 cut(s)	981, 2584
SspMI	CTAG	8 cut(s)	53, 203, 588, 879, 1851, 1953, 2004, 2495
StyI	CCWWGG	3 cut(s)	587, 1985, 2151
TaaI	ACNGT	7 cut(s)	1096, 1202, 1580, 1735, 1828, 2263, 2980
TaiI	ACGT	1 cut(s)	3030
TaqI	TCGA	8 cut(s)	290, 371, 1185, 2232, 2401, 2611, 3201, 3250
TatI	WGTACW	6 cut(s)	141, 207, 690, 2258, 2775, 3181
Tru1I	TTAA	9 cut(s)	81, 426, 680, 888, 1443, 1790, 1818, 3126, 3265
Tru9I	TTAA	9 cut(s)	81, 426, 680, 888, 1443, 1790, 1818, 3126, 3265
TscAI	CASTG	9 cut(s)	1051, 1101, 1207, 1740, 2257, 2268, 2517, 2985, 3174
TseFI	GTSAC	6 cut(s)	397, 643, 709, 1108, 1747, 2624
TseI	GCWGC	7 cut(s)	332, 610, 752, 2054, 2243, 2297, 2922
Tsp45I	GTSAC	6 cut(s)	397, 643, 709, 1108, 1747, 2624
TspRI	CASTG	9 cut(s)	1051, 1101, 1207, 1740, 2257, 2268, 2517, 2985, 3174
Tth111I	GACNNNGTC	1 cut(s)	3029
Van91I	CCANNNNNTGG	2 cut(s)	2831, 2954
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	1001
XapI	RAATTY	5 cut(s)	87, 535, 733, 2266, 3246
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	1708, 1844
XspI	CTAG	8 cut(s)	53, 203, 588, 879, 1851, 1953, 2004, 2495
ZrmI	AGTACT	2 cut(s)	143, 692
Zsp2I	ATGCAT	2 cut(s)	1129, 3057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.