Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004744

Physical Location & Seq

Genomic Coordinates Reverse (-)

56979184 .. 56982930

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3747 bp

ATGCACCTCTACAGTCTCACTCTCCAGCGCGCGACGGGCATAGTCTGCGCCATCAGCGGCAACTTCTCCGGCGAAAAGACCCCAGAAATCGCCGTCGCCCGAGGCAAAGTCCTCGACCTTCTCCGCCCCGACGCCGCCGGTAAGATCCAGACTCTCCTCTCCGTTGAAATTTTCGGCGCCATTAGGTCTTTAGCTCCGTTTAGGCTTACCGGCTCCCGAAAAGACTACATTGTCGTCGGCTCCGATTCCGGCCGAATCGTAATACTAGAATACAACAAAGATAAGAATGTATTTGATAAAATTCACCAAGAGACCTTCGGAAAATCCGGGTCTCGCCGGATTGTTCCGGGTCAGTACTTGGCGGTTGACCCGAAAGGCAGGGCTGTTATGGTTGGAGCCTGTGAGAAGCAGAAGCTAGTGTACATTTTGAATAGGGATGTAGCTAATAGGTTGACTATATCGTCGCCGTTGGAGGCACATAAGTCTCATACTATAGTGTTTTCGATTTGTGGGGTTGATTGTGGGTTTGATAATCCTGTATTTGCTGCCATTGAGCTGGATTATTCCGAGTTGGATCAGGATTCGAGTGGGGAGGTGGCTCGGAAGTATGTGACTTTCTATGAGCTTGATTTGGGGCTTAACCATGTGTGTAGGAAGTGGTCTGATCAGGTTGATGATGGGGCGAATTTGCTGGTTATGGTGCCGGGAGGTGGGGATGGGCCGAGTGGAGTGTTGGTTTGTGCAGAAAATTTTGTGATTTATAAGAATCAGGGACAGGGGGATGTGAGGGCTGTGATTCCTAGGCGTGCTGATTTGCCTGCGCAGCGTGGGGTTCTTATAGTTTCGGCAGCTACTTATAAGCTGAAGTCCATGTTCTTTTTTCTTTTGCAGACTGAGTATGGGGATATATTCAAGGTGACTTTGGAGCATAATGATGATGTTGTCTCGGAATTGAAGATCAAGTACTTTGATACAATCCCAGTCACAACTTCAATGTGTGTGTTGAATTCGCAGCTTTTGTTTGCTGCTTCGGAGTTTGGGAATCACGCTTTGTATCAGTTCCAGGCAATAGGCGAAGATCCTGATGTGGAGTCCTCCTCAGCTTTGTTCATGGAAACTGAAGAGGATTTCCAGCCGTTGTGTTTCCAACCTAGAAAACTTAAGAACCTTGTTGGGATTGATCAGGTTGAGAGCTTGATGCCGATAACGGACATGAAGATCTCTAATCTGTTTGAAGAAGAAACACCTCAAATATTTACGCTTTGTGGCCAGGGTCCTCATTCATCTCTCAGGATACTAAGACCTGGTTTGGCTATCAGTGAGATGGCTGTGTCAGAGCTTCCTGGCATACCGAGTGCTGTCTGGACAGTGAAAAAGAAGGTGACTGATGAGTTTGATGCATACATTGTGGTGTCATTTGCAAACGCTACTCTTGTGTTTTCAATTGGTGAGACAATCGAAGAAGTTATTGACAGTGGTTTTCTTGATACTACCCCTTCACTTGCCGTGTCTTTGATAGGTGATGATGCTCTCATGCAAGTTCACCCAAATGGCATTAGGCATATTAGGGAAGGTGGACATATCAATGAATGGAGAACTCCTGGAAAGAGAACGATTATAATGGTTGGCTCTAATAGACTTCAGGTGGTCATTGCTTTGAGTGGAGGAGAACTTATATACTTTGATGTTGATATGACTGGTCAACTGGTGGAGGTTAAGAAGCATGAATTGTCTGGAGAAGTAGCTTGTCTGGACATTGCCCCAGTACCTGAAGGGAGACAAAGATCTCGTTTCCTTGCAGTTGGCTCATATGACAACACGATTCGTATTTTGTCTTTGGATCCTGATGACTGTATGCAGATTCTGAGTGTTCAAAGTGTCTCTTCAATTCCAGAATCTCTCCTCTTTCTTGAGGCTCAGGCATCAGTTAGTGGTGAGGATGGTGCGGATCATCCTGCCAACCTTTTCCTTTATGCCGGTCTACGAACTGGGATTTTGTTCAGAACAGTGGTGGATATGGTGACAGGTCAGCTTTCTGATTCCCATTCTCGATTCTTAGGACTAAGAGCTCCTAAGCTATTTTCTATTAATATAAGAGGCAAGCATGCCATGCTTTGTTTGTCATGTCGGCCCTGGCTTGGTTATATTCATCAAGGACATTTTCTGTTAACACCACTATCGTATGAGACTATTGAATATGTGGCCTCATTTTCATCTGATCAATGTGTGGAAGGTGTAGTTGCTGTTGCTGGCAGTTCTTTGAGGGTTTTAACTATTGAAAGATTGGGAGAAACATTTAATGAAACTGTGATTCCTCTGAGGTATACCCCTAGAAAGTTTGTGGTTCAAGTGAAACGAAAGCTTTTGGTAATTATTGAAAGTGATCAAGGAGCATTCACAGCAGAAGAGCGTAAAACTGCAAAAAGGAAAACTAGGAAGGATGTTGATGAAGATTTCTCTCCACCAAGGAAGCGTAGGAACACTAGTAGCAATGGTGGTGCAGATCTTTCTCCACCAAAGGAGTGCTTTGAGGCTGCAGAAATAGGTGAAAAAAGAAATGGTAATGTGGAGCAGATGGAAAATGATGATAATGAGGATGATCCCCTCTCTGATGAGCACTATGGCTATCCCAAGGCAGAGTCTGACAAATGGGTTTCTTGCATTAGAGTTCTTGACCCAAAGACAGCAACTACAACTTGTTTGCTGGAGCTCGATAACGAAGCTGCAATCAGTGTATGTACAGTGAATTTTCATGATAACGCCGGCCTGGTTGGGGCAGCTCCTCCGAAGGAGTATGGTACGCTTTTGGCTGTTGGAACCACAAAGGGACTTCAATTTTGGCCCAAGAAAAGTATAACCGGAGGATTTATTCATATATATCGATTTCTTGATGATGGAAAGTCCCTTGAACTTTTGCACAAAACAGAAGTGGATGGTGTTCCTCTTGCTTTATGTCAGTTTCAGGGAAGGTTACTAGCAGGGATAGGATCAGTGCTCAGACTATATGATTTGGGGAGAAAAAGATTGCTTAGGAAATGTGAGAATAAGCTGTTTCCCAACAATATTGTATCCATTCACACCTATCGTGATCGAATATATGTAGGTGACATTCAGGGGTCATTCCACTACTGCAAGTATAGGCGGGATGAGAATCAGCTGTATATATTTGCTGATGATCGTGTTCCAAGATGGCTGACAGCATCGTTCCATATTGATTTTGACACGATGGCAGGTGCGGACAAGTTTGGGAATGTGTACTCTGTGCGGTTACCACAGGATGTTTCAGATGGGATAGAAGAAGATCCAACAGGTGGGAGGATAAAATGGAAGCAGGGGAAGTTGAATGGTGCTCCAAACAAAGTGAAGGAGATCGTGCAGTTTCATGTTGGCGATGTAGTCAGCTGCTTGCAGAAGGCATCTCTCATTCCAGGTGGTGGTGAGTGCATCATTTACGGGACAGTGATGGGTAGCTTGGGTGCATTGTTTGCATTCACTTCCCGTGATGACGTTGTCTTCTTTTCTCACCTGGAGATGTATATGAGGCAGGAACATCCACCCTTGTGTGGGAGAGATCACATGGCTTATAGATCAGCTTATTTCCCGGTTAAGGATGTGATTGATGGAGATCTTTGCGAGCAGTACCCAACACTGCCTATGGATGTACAGAGGAAAATTGCAGTCGAGTTGGATAGGACTCCTGGAGAGATACTAAAGAAACTCGAGGAAATTCGAAATAAGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1248

Amino Acids

138.43

Weight (kDa)

5.61

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	14 - 364	3e-114	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	439 - 759	8.9e-82	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	886 - 1214	3.9e-90	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55200 AT3G55200 AT3G55200 AT3G55220
fragaria_vesca	FvH4_1g28630
malus_domestica	MD01G1119800.v1.1 MD07G1189000.v1.1
prunus_persica	Prupe.2G226500_v2.0.a1 Prupe.2G226500_v2.0.a1
pyrus_communis	pycom07g17890
rosa_chinensis	RchiOBHm_Chr1g0365341 RchiOBHm_Chr3g0492631
rosa_laevigata	RLG00000022753 RLG00000027428
rosa_multiflora	Rmu_sc0000831.1_g000021 Rmu_sc0008527.1_g000001 Rmu_sc0010918.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291290 Rroxscaffold_6G00392170
rosa_rugosa	Rorug01G0321300 Rorug03G0255200
rosa_samantha	Rh1AG330200 Rh1BG291700 Rh1CG308300 Rh1DG323400 Rh3AG305400 Rh3BG341900 Rh3CG339300 Rh3DG341200
rosa_wichuraiana	Rw1G029280 Rw3G026890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	762, 858, 1619
AarI	CACCTGC	1 cut(s)	3221
AasI	GACNNNNNNGTC	2 cut(s)	230, 460
Acc16I	TGCGCA	1 cut(s)	822
Acc36I	ACCTGC	1 cut(s)	3221
AccB1I	GGYRCC	2 cut(s)	176, 700
AccB7I	CCANNNNNTGG	2 cut(s)	3311, 3434
AccI	GTMKAC	2 cut(s)	1981, 2324
AccII	CGCG	2 cut(s)	30, 32
AciI	CCGC	8 cut(s)	57, 124, 135, 362, 1946, 3142, 3236, 3265
AclWI	GGATC	9 cut(s)	139, 582, 1073, 1835, 1848, 1956, 2594, 2995, 3296
AcoI	YGGCCR	2 cut(s)	250, 1267
AcsI	RAATTY	7 cut(s)	168, 300, 685, 748, 1006, 2746, 3726
AcuI	CTGAAG	4 cut(s)	884, 1140, 1625, 1791
AcyI	GRCGYC	2 cut(s)	132, 177
AfaI	GTAC	9 cut(s)	356, 422, 965, 1767, 2740, 2800, 3257, 3641, 3663
AfiI	CCNNNNNNNGG	8 cut(s)	710, 2138, 2773, 3311, 3434, 3563, 3564, 3607
AflII	CTTAAG	1 cut(s)	1160
AhlI	ACTAGT	1 cut(s)	2483
AleI	CACNNNNGTG	1 cut(s)	3559
Alw21I	GWGCWC	5 cut(s)	2071, 2619, 2712, 2997, 3352
Alw26I	GTCTC	9 cut(s)	20, 305, 336, 489, 949, 1445, 1771, 1885, 2180
AlwI	GGATC	9 cut(s)	139, 582, 1073, 1835, 1848, 1956, 2594, 2995, 3296
AlwNI	CAGNNNCTG	3 cut(s)	1769, 1864, 2642
Ama87I	CYCGRG	2 cut(s)	99, 3719
AoxI	GGCC	7 cut(s)	250, 719, 1267, 2129, 2202, 2764, 2840
ApeKI	GCWGC	9 cut(s)	545, 823, 848, 1012, 1025, 2534, 2723, 2777, 3402
ApoI	RAATTY	7 cut(s)	168, 300, 685, 748, 1006, 2746, 3726
ArsI	GACNNNNNNTTYG	2 cut(s)	2820, 2852
AseI	ATTAAT	1 cut(s)	2088
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	5 cut(s)	30, 32, 50, 179, 823
AspS9I	GGNCC	4 cut(s)	719, 1274, 2130, 2841
AsuC2I	CCSGG	4 cut(s)	328, 348, 705, 3602
AsuII	TTCGAA	1 cut(s)	3730
AvaI	CYCGRG	2 cut(s)	99, 3719
AvaII	GGWCC	1 cut(s)	1274
AvrII	CCTAGG	1 cut(s)	800
BalI	TGGCCA	1 cut(s)	1269
BamHI	GGATCC	1 cut(s)	1840
BanI	GGYRCC	2 cut(s)	176, 700
BanII	GRGCYC	2 cut(s)	2071, 2712
BarI	GAAGNNNNNNTAC	4 cut(s)	404, 436, 947, 979
BbsI	GAAGAC	1 cut(s)	3505
Bbv12I	GWGCWC	5 cut(s)	2071, 2619, 2712, 2997, 3352
BbvCI	CCTCAGC	1 cut(s)	1099
BbvI	GCAGC	9 cut(s)	532, 835, 860, 1012, 1024, 2521, 2710, 2789, 3389
BceAI	ACGGC	4 cut(s)	77, 451, 1120, 1490
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciVI	GTATCC	2 cut(s)	1287, 3079
BclI	TGATCA	4 cut(s)	664, 1180, 2218, 2383
BcnI	CCSGG	4 cut(s)	328, 348, 705, 3602
BcoDI	GTCTC	9 cut(s)	20, 305, 336, 489, 949, 1445, 1771, 1885, 2180
BcuI	ACTAGT	1 cut(s)	2483
BfaI	CTAG	8 cut(s)	266, 416, 801, 1152, 2331, 2433, 2484, 2975
BfmI	CTRYAG	3 cut(s)	10, 492, 2535
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	1160
BfuAI	ACCTGC	1 cut(s)	3221
BfuI	GTATCC	2 cut(s)	1287, 3079
BglII	AGATCT	4 cut(s)	1218, 1784, 2503, 3625
BlnI	CCTAGG	1 cut(s)	800
BmcAI	AGTACT	2 cut(s)	356, 965
Bme18I	GGWCC	1 cut(s)	1274
BmeT110I	CYCGRG	2 cut(s)	99, 3719
BmgT120I	GGNCC	4 cut(s)	719, 1274, 2130, 2841
BmiI	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1275, 1842, 2818
BmrI	ACTGGG	3 cut(s)	974, 1757, 1998
BmsI	GCATC	7 cut(s)	1188, 1387, 1516, 1931, 3209, 3425, 3453
BmuI	ACTGGG	3 cut(s)	974, 1757, 1998
BpiI	GAAGAC	1 cut(s)	3505
BplI	GAGNNNNNCTC	2 cut(s)	1082, 1114
BpmI	CTGGAG	5 cut(s)	8, 1755, 2726, 3548, 3720
Bpu10I	CCTNAGC	4 cut(s)	1099, 1917, 2073, 3029
Bpu14I	TTCGAA	1 cut(s)	3730
BpuEI	CTTGAG	1 cut(s)	1931
BpuMI	CCSGG	4 cut(s)	328, 348, 705, 3602
Bsa29I	ATCGAT	1 cut(s)	2881
BsaBI	GATNNNNATC	2 cut(s)	3150, 3624
BsaHI	GRCGYC	2 cut(s)	132, 177
BsaI	GGTCTC	2 cut(s)	305, 336
BsaJI	CCNNGG	6 cut(s)	100, 800, 1270, 2132, 2465, 2631
BsaWI	WCCGGW	1 cut(s)	2858
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	8 cut(s)	710, 2138, 2773, 3311, 3434, 3563, 3564, 3607
Bse118I	RCCGGY	4 cut(s)	137, 209, 1976, 2762
Bse1I	ACTGG	5 cut(s)	980, 1702, 1710, 1763, 1993
Bse3DI	GCAATG	3 cut(s)	1650, 1755, 2497
Bse8I	GATNNNNATC	2 cut(s)	3150, 3624
BseCI	ATCGAT	1 cut(s)	2881
BseDI	CCNNGG	6 cut(s)	100, 800, 1270, 2132, 2465, 2631
BseJI	GATNNNNATC	2 cut(s)	3150, 3624
BseLI	CCNNNNNNNGG	8 cut(s)	710, 2138, 2773, 3311, 3434, 3563, 3564, 3607
BseMI	GCAATG	3 cut(s)	1650, 1755, 2497
BseMII	CTCAG	7 cut(s)	885, 1113, 1303, 1856, 1931, 2309, 3010
BseNI	ACTGG	5 cut(s)	980, 1702, 1710, 1763, 1993
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	5 cut(s)	146, 1087, 1680, 1892, 2772
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	9 cut(s)	532, 835, 860, 1012, 1024, 2521, 2710, 2789, 3389
BsgI	GTGCAG	3 cut(s)	762, 2520, 3395
Bsh1236I	CGCG	2 cut(s)	30, 32
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	7 cut(s)	252, 721, 1269, 2131, 2204, 2766, 2842
BshNI	GGYRCC	2 cut(s)	176, 700
BshVI	ATCGAT	1 cut(s)	2881
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	5 cut(s)	2071, 2619, 2712, 2997, 3352
BsiHKCI	CYCGRG	2 cut(s)	99, 3719
BslFI	GGGAC	4 cut(s)	786, 2841, 2887, 3469
BslI	CCNNNNNNNGG	8 cut(s)	710, 2138, 2773, 3311, 3434, 3563, 3564, 3607
BsmAI	GTCTC	9 cut(s)	20, 305, 336, 489, 949, 1445, 1771, 1885, 2180
BsmFI	GGGAC	4 cut(s)	786, 2841, 2887, 3469
BsmI	GAATGC	2 cut(s)	2393, 3488
BsnI	GGCC	7 cut(s)	252, 721, 1269, 2131, 2204, 2766, 2842
Bso31I	GGTCTC	2 cut(s)	305, 336
BsoBI	CYCGRG	2 cut(s)	99, 3719
Bsp119I	TTCGAA	1 cut(s)	3730
Bsp1286I	GDGCHC	5 cut(s)	2071, 2619, 2712, 2997, 3352
Bsp1407I	TGTACA	3 cut(s)	420, 2738, 3661
BspACI	CCGC	8 cut(s)	57, 124, 135, 362, 1946, 3142, 3236, 3265
BspANI	GGCC	7 cut(s)	252, 721, 1269, 2131, 2204, 2766, 2842
BspCNI	CTCAG	7 cut(s)	886, 1112, 1302, 1857, 1930, 2310, 3009
BspDI	ATCGAT	1 cut(s)	2881
BspFNI	CGCG	2 cut(s)	30, 32
BspHI	TCATGA	1 cut(s)	2752
BspLI	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1275, 1842, 2818
BspMAI	CTGCAG	1 cut(s)	2539
BspMI	ACCTGC	1 cut(s)	3221
BspPI	GGATC	9 cut(s)	139, 582, 1073, 1835, 1848, 1956, 2594, 2995, 3296
BspQI	GCTCTTC	1 cut(s)	2400
BspT104I	TTCGAA	1 cut(s)	3730
BspT107I	GGYRCC	2 cut(s)	176, 700
BspTI	CTTAAG	1 cut(s)	1160
BspTNI	GGTCTC	2 cut(s)	305, 336
BsrDI	GCAATG	3 cut(s)	1650, 1755, 2497
BsrFI	RCCGGY	4 cut(s)	137, 209, 1976, 2762
BsrGI	TGTACA	3 cut(s)	420, 2738, 3661
BsrI	ACTGG	5 cut(s)	980, 1702, 1710, 1763, 1993
BssAI	RCCGGY	4 cut(s)	137, 209, 1976, 2762
BssECI	CCNNGG	6 cut(s)	100, 800, 1270, 2132, 2465, 2631
BssHII	GCGCGC	1 cut(s)	28
BssNAI	GTATAC	1 cut(s)	2325
BssNI	GRCGYC	2 cut(s)	132, 177
BssT1I	CCWWGG	3 cut(s)	800, 2465, 2631
Bst1107I	GTATAC	1 cut(s)	2325
Bst4CI	ACNGT	8 cut(s)	14, 1369, 1475, 1853, 2008, 2308, 2743, 3460
Bst6I	CTCTTC	3 cut(s)	1116, 1888, 2400
BstACI	GRCGYC	2 cut(s)	132, 177
BstAFI	CTTAAG	1 cut(s)	1160
BstAPI	GCANNNNNTGC	3 cut(s)	45, 2110, 3485
BstAUI	TGTACA	3 cut(s)	420, 2738, 3661
BstBI	TTCGAA	1 cut(s)	3730
BstC8I	GCNNGC	9 cut(s)	30, 807, 819, 2102, 2106, 2251, 2764, 3407, 3635
BstEII	GGTNACC	1 cut(s)	3267
BstFNI	CGCG	2 cut(s)	30, 32
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	5 cut(s)	30, 32, 50, 179, 823
BstMAI	GTCTC	9 cut(s)	20, 305, 336, 489, 949, 1445, 1771, 1885, 2180
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 45, 54, 823, 2110, 2399, 3485
BstNSI	RCATGY	1 cut(s)	2108
BstPI	GGTNACC	1 cut(s)	3267
BstSFI	CTRYAG	3 cut(s)	10, 492, 2535
BstUI	CGCG	2 cut(s)	30, 32
BstV1I	GCAGC	9 cut(s)	532, 835, 860, 1012, 1024, 2521, 2710, 2789, 3389
BstV2I	GAAGAC	1 cut(s)	3505
BstX2I	RGATCY	8 cut(s)	144, 1078, 1218, 1784, 1840, 2503, 3301, 3625
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	8 cut(s)	144, 1078, 1218, 1784, 1840, 2503, 3301, 3625
BstZ17I	GTATAC	1 cut(s)	2325
BstZI	CGGCCG	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	2881
BsuI	GTATCC	2 cut(s)	1287, 3079
BsuRI	GGCC	7 cut(s)	252, 721, 1269, 2131, 2204, 2766, 2842
BsuTUI	ATCGAT	1 cut(s)	2881
BtgZI	GCGATG	1 cut(s)	3405
BtsI	GCAGTG	1 cut(s)	3647
BtsIMutI	CAGTG	9 cut(s)	1324, 1374, 1480, 2013, 2737, 2748, 2997, 3465, 3647
BveI	ACCTGC	1 cut(s)	3221
Cac8I	GCNNGC	9 cut(s)	30, 807, 819, 2102, 2106, 2251, 2764, 3407, 3635
CaiI	CAGNNNCTG	3 cut(s)	1769, 1864, 2642
CciI	TCATGA	1 cut(s)	2752
CfoI	GCGC	5 cut(s)	30, 32, 50, 179, 823
Cfr10I	RCCGGY	4 cut(s)	137, 209, 1976, 2762
Cfr13I	GGNCC	4 cut(s)	719, 1274, 2130, 2841
ClaI	ATCGAT	1 cut(s)	2881
CseI	GACGC	1 cut(s)	140
CsiI	ACCWGGT	1 cut(s)	1303
Csp6I	GTAC	9 cut(s)	355, 421, 964, 1766, 2739, 2799, 3256, 3640, 3662
CviQI	GTAC	9 cut(s)	355, 421, 964, 1766, 2739, 2799, 3256, 3640, 3662
DinI	GGCGCC	1 cut(s)	178
DrdI	GACNNNNNNGTC	2 cut(s)	230, 460
DseDI	GACNNNNNNGTC	2 cut(s)	230, 460
EaeI	YGGCCR	2 cut(s)	250, 1267
EagI	CGGCCG	1 cut(s)	250
Eam1104I	CTCTTC	3 cut(s)	1116, 1888, 2400
EarI	CTCTTC	3 cut(s)	1116, 1888, 2400
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	2 cut(s)	2069, 2710
EclXI	CGGCCG	1 cut(s)	250
Eco130I	CCWWGG	3 cut(s)	800, 2465, 2631
Eco24I	GRGCYC	2 cut(s)	2071, 2712
Eco31I	GGTCTC	2 cut(s)	305, 336
Eco47I	GGWCC	1 cut(s)	1274
Eco52I	CGGCCG	1 cut(s)	250
Eco53kI	GAGCTC	2 cut(s)	2069, 2710
Eco57I	CTGAAG	4 cut(s)	884, 1140, 1625, 1791
Eco88I	CYCGRG	2 cut(s)	99, 3719
Eco91I	GGTNACC	1 cut(s)	3267
EcoICRI	GAGCTC	2 cut(s)	2069, 2710
EcoO109I	RGGNCCY	1 cut(s)	1274
EcoO65I	GGTNACC	1 cut(s)	3267
EcoRI	GAATTC	1 cut(s)	1006
EcoT14I	CCWWGG	3 cut(s)	800, 2465, 2631
EcoT22I	ATGCAT	1 cut(s)	1402
EcoT38I	GRGCYC	2 cut(s)	2071, 2712
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	800, 2465, 2631
FalI	AAGNNNNNCTT	4 cut(s)	1867, 1899, 2510, 2542
FaqI	GGGAC	4 cut(s)	786, 2841, 2887, 3469
FauI	CCCGC	1 cut(s)	3135
FauNDI	CATATG	1 cut(s)	1810
FbaI	TGATCA	4 cut(s)	664, 1180, 2218, 2383
FblI	GTMKAC	2 cut(s)	1981, 2324
FriOI	GRGCYC	2 cut(s)	2071, 2712
FspBI	CTAG	8 cut(s)	266, 416, 801, 1152, 2331, 2433, 2484, 2975
FspI	TGCGCA	1 cut(s)	822
GlaI	GCGC	5 cut(s)	29, 31, 49, 178, 822
GsuI	CTGGAG	5 cut(s)	8, 1755, 2726, 3548, 3720
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	7 cut(s)	252, 721, 1269, 2131, 2204, 2766, 2842
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	5 cut(s)	30, 32, 50, 179, 823
Hin1I	GRCGYC	2 cut(s)	132, 177
Hin6I	GCGC	5 cut(s)	28, 30, 48, 177, 821
HinP1I	GCGC	5 cut(s)	28, 30, 48, 177, 821
HincII	GTYRAC	4 cut(s)	367, 453, 1703, 2169
HindII	GTYRAC	4 cut(s)	367, 453, 1703, 2169
HindIII	AAGCTT	1 cut(s)	2360
HpaI	GTTAAC	1 cut(s)	2169
Hpy99I	CGWCG	5 cut(s)	37, 98, 134, 239, 466
HpyCH4III	ACNGT	8 cut(s)	14, 1369, 1475, 1853, 2008, 2308, 2743, 3460
HpyCH4IV	ACGT	1 cut(s)	3507
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 45, 54, 823, 2110, 2399, 3485
HpySE526I	ACGT	1 cut(s)	3507
Hsp92I	GRCGYC	2 cut(s)	132, 177
HspAI	GCGC	5 cut(s)	28, 30, 48, 177, 821
KasI	GGCGCC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	2762
KroNI	GCCGGC	1 cut(s)	2764
Ksp22I	TGATCA	4 cut(s)	664, 1180, 2218, 2383
KspAI	GTTAAC	1 cut(s)	2169
LguI	GCTCTTC	1 cut(s)	2400
Lsp1109I	GCAGC	9 cut(s)	532, 835, 860, 1012, 1024, 2521, 2710, 2789, 3389
LweI	GCATC	7 cut(s)	1188, 1387, 1516, 1931, 3209, 3425, 3453
MabI	ACCWGGT	1 cut(s)	1303
MaeI	CTAG	8 cut(s)	266, 416, 801, 1152, 2331, 2433, 2484, 2975
MaeII	ACGT	1 cut(s)	3507
MaeIII	GTNAC	8 cut(s)	610, 916, 982, 1381, 2020, 2970, 3104, 3267
MfeI	CAATTG	1 cut(s)	1443
MflI	RGATCY	8 cut(s)	144, 1078, 1218, 1784, 1840, 2503, 3301, 3625
MhlI	GDGCHC	5 cut(s)	2071, 2619, 2712, 2997, 3352
MlsI	TGGCCA	1 cut(s)	1269
MluNI	TGGCCA	1 cut(s)	1269
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	4 cut(s)	145, 1100, 2648, 3688
MmeI	TCCRAC	7 cut(s)	373, 450, 552, 1171, 2794, 3329, 3666
Mox20I	TGGCCA	1 cut(s)	1269
Mph1103I	ATGCAT	1 cut(s)	1402
MroNI	GCCGGC	1 cut(s)	2762
MscI	TGGCCA	1 cut(s)	1269
MseI	TTAA	9 cut(s)	639, 1161, 1716, 2088, 2168, 2270, 2298, 3606, 3745
MslI	CAYNNNNRTG	5 cut(s)	933, 1409, 1548, 1584, 3559
Msp20I	TGGCCA	1 cut(s)	1269
MspA1I	CMGCKG	3 cut(s)	57, 3157, 3402
MspCI	CTTAAG	1 cut(s)	1160
MunI	CAATTG	1 cut(s)	1443
Mva1269I	GAATGC	2 cut(s)	2393, 3488
MvnI	CGCG	2 cut(s)	30, 32
MwoI	GCNNNNNNNGC	7 cut(s)	36, 45, 54, 823, 2110, 2399, 3485
NaeI	GCCGGC	1 cut(s)	2764
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	4 cut(s)	328, 348, 705, 3602
NdeI	CATATG	1 cut(s)	1810
NgoMIV	GCCGGC	1 cut(s)	2762
NlaIV	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1275, 1842, 2818
NmeAIII	GCCGAG	1 cut(s)	747
NmuCI	GTSAC	6 cut(s)	610, 916, 982, 1381, 2020, 3104
NsbI	TGCGCA	1 cut(s)	822
NsiI	ATGCAT	1 cut(s)	1402
NspI	RCATGY	1 cut(s)	2108
NspV	TTCGAA	1 cut(s)	3730
OliI	CACNNNNGTG	1 cut(s)	3559
PaeI	GCATGC	1 cut(s)	2108
PaeR7I	CTCGAG	1 cut(s)	3719
PagI	TCATGA	1 cut(s)	2752
PaqCI	CACCTGC	1 cut(s)	3221
PauI	GCGCGC	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	2400
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	2393, 3488
PdiI	GCCGGC	1 cut(s)	2764
PflFI	GACNNNGTC	1 cut(s)	3509
PflMI	CCANNNNNTGG	2 cut(s)	3311, 3434
PfoI	TCCNGGA	2 cut(s)	1600, 3697
PleI	GAGTC	4 cut(s)	145, 1099, 2647, 3688
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	4 cut(s)	145, 1099, 2647, 3688
PpuMI	RGGWCCY	1 cut(s)	1274
PshBI	ATTAAT	1 cut(s)	2088
PsiI	TTATAA	3 cut(s)	762, 858, 1619
Psp124BI	GAGCTC	2 cut(s)	2071, 2712
Psp5II	RGGWCCY	1 cut(s)	1274
PspEI	GGTNACC	1 cut(s)	3267
PspN4I	GGNNCC	8 cut(s)	178, 214, 241, 397, 702, 1275, 1842, 2818
PspPI	GGNCC	4 cut(s)	719, 1274, 2130, 2841
PspPPI	RGGWCCY	1 cut(s)	1274
PspXI	VCTCGAGB	1 cut(s)	3719
PstI	CTGCAG	1 cut(s)	2539
PstNI	CAGNNNCTG	3 cut(s)	1769, 1864, 2642
PsuI	RGATCY	8 cut(s)	144, 1078, 1218, 1784, 1840, 2503, 3301, 3625
PsyI	GACNNNGTC	1 cut(s)	3509
PteI	GCGCGC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	3157, 3402
RsaI	GTAC	9 cut(s)	356, 422, 965, 1767, 2740, 2800, 3257, 3641, 3663
RsaNI	GTAC	9 cut(s)	355, 421, 964, 1766, 2739, 2799, 3256, 3640, 3662
RseI	CAYNNNNRTG	5 cut(s)	933, 1409, 1548, 1584, 3559
SacI	GAGCTC	2 cut(s)	2071, 2712
SapI	GCTCTTC	1 cut(s)	2400
SaqAI	TTAA	9 cut(s)	639, 1161, 1716, 2088, 2168, 2270, 2298, 3606, 3745
Sau96I	GGNCC	4 cut(s)	719, 1274, 2130, 2841
ScaI	AGTACT	2 cut(s)	356, 965
SchI	GAGTC	4 cut(s)	145, 1100, 2648, 3688
SduI	GDGCHC	5 cut(s)	2071, 2619, 2712, 2997, 3352
SexAI	ACCWGGT	1 cut(s)	1303
SfaNI	GCATC	7 cut(s)	1188, 1387, 1516, 1931, 3209, 3425, 3453
SfcI	CTRYAG	3 cut(s)	10, 492, 2535
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	3719
SfuI	TTCGAA	1 cut(s)	3730
SinI	GGWCC	1 cut(s)	1274
SlaI	CTCGAG	1 cut(s)	3719
SmiMI	CAYNNNNRTG	5 cut(s)	933, 1409, 1548, 1584, 3559
SmlI	CTYRAG	3 cut(s)	1160, 1910, 3719
SmoI	CTYRAG	3 cut(s)	1160, 1910, 3719
SpeI	ACTAGT	1 cut(s)	2483
SphI	GCATGC	1 cut(s)	2108
SsiI	CCGC	8 cut(s)	57, 124, 135, 362, 1946, 3142, 3236, 3265
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	2 cut(s)	1254, 3064
SspMI	CTAG	8 cut(s)	266, 416, 801, 1152, 2331, 2433, 2484, 2975
SstI	GAGCTC	2 cut(s)	2071, 2712
StyI	CCWWGG	3 cut(s)	800, 2465, 2631
TaaI	ACNGT	8 cut(s)	14, 1369, 1475, 1853, 2008, 2308, 2743, 3460
TaiI	ACGT	1 cut(s)	3510
TatI	WGTACW	6 cut(s)	354, 420, 963, 2738, 3255, 3661
TauI	GCSGC	2 cut(s)	60, 137
Tru1I	TTAA	9 cut(s)	639, 1161, 1716, 2088, 2168, 2270, 2298, 3606, 3745
Tru9I	TTAA	9 cut(s)	639, 1161, 1716, 2088, 2168, 2270, 2298, 3606, 3745
TscAI	CASTG	9 cut(s)	1324, 1374, 1480, 2013, 2737, 2748, 2997, 3465, 3654
TseFI	GTSAC	6 cut(s)	610, 916, 982, 1381, 2020, 3104
TseI	GCWGC	9 cut(s)	545, 823, 848, 1012, 1025, 2534, 2723, 2777, 3402
Tsp45I	GTSAC	6 cut(s)	610, 916, 982, 1381, 2020, 3104
TspGWI	ACGGA	3 cut(s)	151, 186, 1223
TspRI	CASTG	9 cut(s)	1324, 1374, 1480, 2013, 2737, 2748, 2997, 3465, 3654
Tth111I	GACNNNGTC	1 cut(s)	3509
Van91I	CCANNNNNTGG	2 cut(s)	3311, 3434
Vha464I	CTTAAG	1 cut(s)	1160
VpaK11BI	GGWCC	1 cut(s)	1274
VspI	ATTAAT	1 cut(s)	2088
XapI	RAATTY	7 cut(s)	168, 300, 685, 748, 1006, 2746, 3726
XceI	RCATGY	1 cut(s)	2108
XhoI	CTCGAG	1 cut(s)	3719
XmaJI	CCTAGG	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	1981, 2324
XspI	CTAG	8 cut(s)	266, 416, 801, 1152, 2331, 2433, 2484, 2975
ZrmI	AGTACT	2 cut(s)	356, 965
Zsp2I	ATGCAT	1 cut(s)	1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.