RLG00000028533

Ycf20-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008566
Physical Location & Seq
Reverse (-)
24004484 .. 24005405
922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028533

Sequence Viewer

Length: 654 bp
ATGGCGATTGCAATTACAGTGCCTACCTATCCAAGAAATGTTGAGCTTTTATCTTCTAAGTGTGTTGGTTCCAGAGTTATAGCGCTGGGTCTTTGTGCAATGTCTTACAAACCTACTAGTACTCTTCGGCACAAGCTCAATTCTCGCTGCTGTTTCTTCTGTATGCCTGAACCTCTTCTGGTCAACAATTTCAAGAGGATTTCATGGTCTGTCAGAAGCAATGTAGATAACAGTGGGTTAGACCCATCTCCAACAAATGGCACAAGATTAATTAGGGTTATCCAAGCTATTCAATCCAAGTTAGGTGCCAGAATTGGAGAGATAAGGAGAGGTTTACCCGTGAAAATACTTTTCTTCCTAGTCGGTTTCTATTGTTCAACTGCTTATGCTACTGTTATTGGGCAAACGGGAGACTGGGACATTCTCTCTGCAGCCCTTGCTGTGCTTATTGTGGAGGGGATTGGGGCCCTCATGTACAAGGCTTCTCTTCCTTTATTGAAGAAGACTAAAAGCCTGATAACCAAGTTTAACTATTGGAAAGCTGGGCTTGCGATGGGTCTTTTCTTGGATTCGTTTAAATATGAAGTCAATGACATTTTCGGATTCAGTAACCCCTTCAGTTTTGTACTAGATGCATTTTCATTATTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF565

Protein Analysis

218

Amino Acids

23.98

Weight (kDa)

9.64

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF565 PF04483 135 - 193 5.2e-16 Protein of unknown function (DUF565)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 601
AfaI GTAC 3 cut(s) 121, 476, 627
AfeI AGCGCT 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 193, 293, 378, 499
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 4 cut(s) 46, 136, 287, 542
AluI AGCT 4 cut(s) 46, 136, 287, 542
Alw26I GTCTC 1 cut(s) 405
Aor51HI AGCGCT 1 cut(s) 84
AoxI GGCC 1 cut(s) 465
ApaI GGGCCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 147, 431
AseI ATTAAT 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 465, 466
BaeGI GKGCMC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 134, 443
BccI CCATC 2 cut(s) 253, 547
BcoDI GTCTC 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 3 cut(s) 117, 359, 629
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 2 cut(s) 148, 432
BlsI GCNGC 2 cut(s) 149, 433
BmcAI AGTACT 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 465, 466
BmiI GGNNCC 4 cut(s) 70, 307, 466, 467
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 509
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 2 cut(s) 105, 226
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 105, 226
BseNI ACTGG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 2 cut(s) 134, 443
BseYI CCCAGC 2 cut(s) 85, 542
BshFI GGCC 1 cut(s) 467
BshNI GGYRCC 1 cut(s) 305
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 467
Bsp120I GGGCCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 474
BspANI GGCC 1 cut(s) 467
BspLI GGNNCC 4 cut(s) 70, 307, 466, 467
BspMAI CTGCAG 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 2 cut(s) 105, 226
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 19, 233, 394
Bst6I CTCTTC 3 cut(s) 129, 180, 492
BstAPI GCANNNNNTGC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 437, 548
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 134, 443
BstV2I GAAGAC 1 cut(s) 509
BsuRI GGCC 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 24, 238
Cac8I GCNNGC 1 cut(s) 549
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 465, 466
Csp6I GTAC 3 cut(s) 120, 475, 626
CviAII CATG 2 cut(s) 204, 472
CviJI RGCY 9 cut(s) 46, 136, 287, 434, 467, 482, 513, 542, 547
CviKI_1 RGCY 9 cut(s) 46, 136, 287, 434, 467, 482, 513, 542, 547
CviQI GTAC 3 cut(s) 120, 475, 626
DdeI CTNAG 1 cut(s) 57
DraI TTTAAA 1 cut(s) 577
Eam1104I CTCTTC 3 cut(s) 129, 180, 492
EarI CTCTTC 3 cut(s) 129, 180, 492
Eco24I GRGCYC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 601
EcoO109I RGGNCCY 2 cut(s) 465, 466
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 469
FaeI CATG 2 cut(s) 207, 475
FaiI YATR 6 cut(s) 80, 164, 205, 387, 473, 582
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 203, 471
Fnu4HI GCNGC 2 cut(s) 148, 432
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 2 cut(s) 148, 432
FspBI CTAG 3 cut(s) 117, 359, 629
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 148, 432
GsaI CCCAGC 2 cut(s) 89, 546
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 1 cut(s) 467
HhaI GCGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 207, 475
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 569, 603
Hpy166II GTNNAC 2 cut(s) 184, 335
Hpy188I TCNGA 2 cut(s) 215, 602
Hpy188III TCNNGA 2 cut(s) 72, 193
Hpy8I GTNNAC 2 cut(s) 184, 335
HpyAV CCTTC 1 cut(s) 625
HpyCH4III ACNGT 3 cut(s) 19, 233, 394
HpyCH4V TGCA 4 cut(s) 11, 98, 431, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 548
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 207, 475
HspAI GCGC 1 cut(s) 83
LpnPI CCDG 8 cut(s) 71, 85, 164, 180, 322, 400, 527, 528
Lsp1109I GCAGC 2 cut(s) 134, 443
LweI GCATC 1 cut(s) 622
MaeI CTAG 3 cut(s) 117, 359, 629
MaeIII GTNAC 1 cut(s) 608
MboII GAAGA 8 cut(s) 45, 116, 148, 167, 346, 479, 511, 514
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 5 cut(s) 12, 139, 187, 270, 312
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 5 cut(s) 183, 189, 323, 448, 479
Mph1103I ATGCAT 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 4 cut(s) 269, 528, 576, 652
MwoI GCNNNNNNNGC 2 cut(s) 437, 548
NlaIII CATG 2 cut(s) 207, 475
NlaIV GGNNCC 4 cut(s) 70, 307, 466, 467
NsiI ATGCAT 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 569, 603
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 2 cut(s) 149, 433
PshBI ATTAAT 1 cut(s) 269
PspFI CCCAGC 2 cut(s) 85, 542
PspN4I GGNNCC 4 cut(s) 70, 307, 466, 467
PspOMI GGGCCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 465, 466
PstI CTGCAG 1 cut(s) 433
RsaI GTAC 3 cut(s) 121, 476, 627
RsaNI GTAC 3 cut(s) 120, 475, 626
SaqAI TTAA 4 cut(s) 269, 528, 576, 652
SatI GCNGC 2 cut(s) 148, 432
Sau96I GGNCC 2 cut(s) 465, 466
ScaI AGTACT 1 cut(s) 121
SduI GDGCHC 1 cut(s) 469
SetI ASST 9 cut(s) 29, 48, 115, 138, 175, 289, 307, 334, 544
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 5 cut(s) 12, 139, 187, 270, 312
SspMI CTAG 3 cut(s) 117, 359, 629
TaaI ACNGT 3 cut(s) 19, 233, 394
TasI AATT 5 cut(s) 12, 139, 187, 270, 312
TatI WGTACW 3 cut(s) 119, 474, 625
TfiI GAWTC 2 cut(s) 569, 603
Tru1I TTAA 4 cut(s) 269, 528, 576, 652
Tru9I TTAA 4 cut(s) 269, 528, 576, 652
TscAI CASTG 2 cut(s) 24, 238
TseI GCWGC 2 cut(s) 147, 431
TspDTI ATGAA 3 cut(s) 192, 597, 630
TspRI CASTG 2 cut(s) 24, 238
Van91I CCANNNNNTGG 1 cut(s) 257
VspI ATTAAT 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 3 cut(s) 117, 359, 629
ZrmI AGTACT 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.