Rorug01G0205400

Ycf20-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008566
Physical Location & Seq
Forward (+)
28797268 .. 28797534
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0205400.1

Sequence Viewer

Length: 267 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGTGGAGCATGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF565

Protein Analysis

88

Amino Acids

10.44

Weight (kDa)

9.37

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 88 5.1e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 2 cut(s) 130, 193
AluI AGCT 2 cut(s) 130, 193
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 6, 155
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 106, 180, 210
BspLI GGNNCC 2 cut(s) 6, 155
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 3 cut(s) 106, 180, 210
Bst4CI ACNGT 1 cut(s) 163
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 109, 183, 213
BstMBI GATC 3 cut(s) 106, 180, 210
BstNSI RCATGY 2 cut(s) 73, 91
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsCI GGATG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 70, 88
CviJI RGCY 4 cut(s) 53, 130, 193, 254
CviKI_1 RGCY 4 cut(s) 53, 130, 193, 254
CviQI GTAC 1 cut(s) 202
DpnI GATC 3 cut(s) 108, 182, 212
DpnII GATC 3 cut(s) 106, 180, 210
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 2 cut(s) 73, 91
FaiI YATR 2 cut(s) 71, 89
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 69, 87
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 2 cut(s) 73, 91
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 3 cut(s) 220, 241, 257
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 73, 91
Kzo9I GATC 3 cut(s) 106, 180, 210
LmnI GCTCC 2 cut(s) 84, 127
LpnPI CCDG 4 cut(s) 29, 67, 155, 203
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MalI GATC 3 cut(s) 108, 182, 212
MboI GATC 3 cut(s) 106, 180, 210
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 256
MnlI CCTC 4 cut(s) 22, 29, 131, 171
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 106, 180, 210
NlaIII CATG 2 cut(s) 73, 91
NlaIV GGNNCC 2 cut(s) 6, 155
NspI RCATGY 2 cut(s) 73, 91
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 6, 155
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 106, 180, 210
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 256
SetI ASST 5 cut(s) 132, 155, 174, 195, 228
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TfiI GAWTC 2 cut(s) 94, 117
TseI GCWGC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 2 cut(s) 73, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.