Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

30840549 .. 30842003

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCAGCAGGCGTGACTATTGGAGGCACCAAGGCGAAACAGACTGAGGATGTTGCTTCTAGGATCACTACTAAGGCCTCGGATGTTGGGCATACTATGTATGCTGTTCTTAATATAGTGGTCATCAGCCCTATTTTATCTGGGATTTCAGCTGTGGTGAGCAAGTTTTGTTCGTGTAAAGTCCCTGTGAGAAACTCACCAATGACATCTAACAAAGCCCAGCTTAGCACTGCTGCGCTATCTGTTTATCTGAATAAGGTCCTCCCTGCAATTCTATTTGTGAAAGCAAGCAATGAAGAGTTGTGGGAGAATATAGGTTTAAGAAGCTTGCTTACACTGACCTCTGCGACCAATTTGAAAAAGAAGAAAATGAAGGCAGTTTTTCCTCGGATCACACAGATTATATATTTTGGAGGGCTTTCTATGCTGTGTGTTGCTCCAATGGTGTTGTGTAGTAGTTCAATCGATATCTTTGGCATAGTTAATCCAATTCATGTATTTGAGATTTTTAAATCCCTTGAGCTTTACTATATGTTCTTGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

183

Amino Acids

19.77

Weight (kDa)

9.67

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AclWI	GGATC	2 cut(s)	71, 398
AgsI	TTSAA	3 cut(s)	358, 462, 541
AluBI	AGCT	4 cut(s)	152, 223, 327, 523
AluI	AGCT	4 cut(s)	152, 223, 327, 523
AlwI	GGATC	2 cut(s)	71, 398
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	5, 233
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	169, 189
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BbvI	GCAGC	2 cut(s)	17, 220
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	6, 234
BlpI	GCTNAGC	1 cut(s)	224
BlsI	GCNGC	2 cut(s)	7, 235
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	30, 78, 386
Bse3DI	GCAATG	1 cut(s)	298
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	30, 78, 386
BseGI	GGATG	2 cut(s)	55, 88
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	17, 220
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	63, 390
Bsp1720I	GCTNAGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	71, 398
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	30, 78, 386
BssMI	GATC	2 cut(s)	63, 390
BssT1I	CCWWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	10, 289, 329
BstDEI	CTNAG	3 cut(s)	45, 72, 224
BstF5I	GGATG	2 cut(s)	55, 88
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	66, 393
BstMBI	GATC	2 cut(s)	63, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	17, 220
Bsu15I	ATCGAT	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	55, 88
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	228, 335
Cac8I	GCNNGC	3 cut(s)	10, 289, 329
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	465
CviAII	CATG	1 cut(s)	494
CviJI	RGCY	8 cut(s)	77, 129, 152, 218, 223, 327, 418, 523
CviKI_1	RGCY	8 cut(s)	77, 129, 152, 218, 223, 327, 418, 523
DdeI	CTNAG	3 cut(s)	45, 72, 224
DpnI	GATC	2 cut(s)	65, 392
DpnII	GATC	2 cut(s)	63, 390
DraI	TTTAAA	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	497
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	6, 234
FokI	GGATG	2 cut(s)	62, 95
Fsp4HI	GCNGC	2 cut(s)	6, 234
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	6, 234
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	325
HphI	GGTGA	2 cut(s)	169, 189
Hpy188I	TCNGA	3 cut(s)	82, 252, 390
Hpy188III	TCNNGA	1 cut(s)	538
HpyAV	CCTTC	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	3 cut(s)	45, 72, 224
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	63, 390
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	4 cut(s)	126, 198, 233, 279
Lsp1109I	GCAGC	2 cut(s)	17, 220
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	65, 392
MboI	GATC	2 cut(s)	63, 390
MboII	GAAGA	2 cut(s)	308, 376
MluCI	AATT	3 cut(s)	270, 352, 489
MnlI	CCTC	7 cut(s)	17, 40, 88, 272, 352, 396, 407
MseI	TTAA	4 cut(s)	111, 320, 483, 510
MspA1I	CMGCKG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	424
NdeII	GATC	2 cut(s)	63, 390
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	7, 235
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	4 cut(s)	111, 320, 483, 510
SatI	GCNGC	2 cut(s)	6, 234
Sau3AI	GATC	2 cut(s)	63, 390
Sau96I	GGNCC	1 cut(s)	259
SetI	ASST	7 cut(s)	154, 225, 261, 319, 329, 344, 525
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	270, 352, 489
SseBI	AGGCCT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	270, 352, 489
Tru1I	TTAA	4 cut(s)	111, 320, 483, 510
Tru9I	TTAA	4 cut(s)	111, 320, 483, 510
TscAI	CASTG	2 cut(s)	235, 342
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	5, 233
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	309, 386, 482
TspRI	CASTG	2 cut(s)	235, 342
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.