Rroxscaffold_6G00428450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017020
Physical Location & Seq
Reverse (-)
48825288 .. 48827957
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428450.1

Sequence Viewer

Length: 375 bp
ATGGAGGATAAATTGTTGATGCATGATCAAAATGGTTCTCATACTAACAATGCTACTAGTAACATGGAAGAGTGTTACTGGTCCGCTGTCCAACTCTTACCCATGCATGATGATCCTCACTCTTCGGTTGTGCACAAGTCTGTTCTCGCTGAAGTACATGTAGAAATTGGCTTCGAATTTGCAGGAAAATTCGGGTTGGGATGGCATATATTAGGGACTGCAGTAAGCGAATTCATGGGAGCGTTCACGAGGCGAATTATAATAGCGCACCTAAAGAAGGGCGCAAGGAGCGGAACCCTAAAAGTTAGGGGCCAACGAAATGGACGTGTGAGTTCATACAACCGCCCTACAAAGGAAGGAAAACAGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.86

Weight (kDa)

8.82

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 291
AciI CCGC 3 cut(s) 84, 291, 343
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 3 cut(s) 176, 188, 230
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 277, 352
AflIII ACRYGT 2 cut(s) 157, 325
AhlI ACTAGT 1 cut(s) 56
AjiI CACGTC 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 131
AlwI GGATC 1 cut(s) 107
AoxI GGCC 1 cut(s) 310
ApaLI GTGCAC 1 cut(s) 131
ApoI RAATTY 3 cut(s) 176, 188, 230
AspLEI GCGC 2 cut(s) 268, 284
AspS9I GGNCC 2 cut(s) 81, 310
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 135
BauI CACGAG 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 195
BclI TGATCA 1 cut(s) 25
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 81, 310
BmiI GGNNCC 2 cut(s) 295, 311
BmsI GCATC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 352
Bse1I ACTGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 277, 352
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 135
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 277, 352
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 25, 112
BspACI CCGC 3 cut(s) 84, 291, 343
BspANI GGCC 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 295, 311
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 291
BsrI ACTGG 1 cut(s) 83
BssMI GATC 2 cut(s) 25, 112
BssSI CACGAG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 63, 127
BstBI TTCGAA 1 cut(s) 174
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 206
BstHHI GCGC 2 cut(s) 268, 284
BstKTI GATC 2 cut(s) 28, 115
BstMBI GATC 2 cut(s) 25, 112
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 320
BsuRI GGCC 1 cut(s) 312
BtrI CACGTC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 206
CfoI GCGC 2 cut(s) 268, 284
Cfr13I GGNCC 2 cut(s) 81, 310
Csp6I GTAC 1 cut(s) 155
CviAII CATG 6 cut(s) 23, 64, 103, 107, 158, 235
CviJI RGCY 2 cut(s) 171, 312
CviKI_1 RGCY 2 cut(s) 171, 312
CviQI GTAC 1 cut(s) 155
DpnI GATC 2 cut(s) 27, 114
DpnII GATC 2 cut(s) 25, 112
Eam1104I CTCTTC 2 cut(s) 63, 127
EarI CTCTTC 2 cut(s) 63, 127
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 230
EcoT22I ATGCAT 2 cut(s) 24, 108
FaeI CATG 6 cut(s) 26, 67, 106, 110, 161, 238
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 22, 63, 102, 106, 157, 234
FbaI TGATCA 1 cut(s) 25
FokI GGATG 1 cut(s) 213
FspBI CTAG 1 cut(s) 57
GlaI GCGC 2 cut(s) 267, 283
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 2 cut(s) 268, 284
Hin1II CATG 6 cut(s) 26, 67, 106, 110, 161, 238
Hin6I GCGC 2 cut(s) 266, 282
HinP1I GCGC 2 cut(s) 266, 282
Hpy166II GTNNAC 2 cut(s) 133, 246
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 133, 246
HpyAV CCTTC 2 cut(s) 271, 350
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 5 cut(s) 22, 106, 133, 182, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 6 cut(s) 26, 67, 106, 110, 161, 238
HspAI GCGC 2 cut(s) 266, 282
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 112
LmnI GCTCC 2 cut(s) 239, 288
LpnPI CCDG 2 cut(s) 64, 168
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 59, 74
MalI GATC 2 cut(s) 27, 114
MbiI CCGCTC 1 cut(s) 291
MboI GATC 2 cut(s) 25, 112
MboII GAAGA 2 cut(s) 80, 114
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 6 cut(s) 11, 165, 176, 188, 230, 255
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 126, 243
Mph1103I ATGCAT 2 cut(s) 24, 108
MspA1I CMGCKG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 2 cut(s) 25, 112
NlaIII CATG 6 cut(s) 26, 67, 106, 110, 161, 238
NlaIV GGNNCC 2 cut(s) 295, 311
NsiI ATGCAT 2 cut(s) 24, 108
NspI RCATGY 1 cut(s) 161
NspV TTCGAA 1 cut(s) 174
PciI ACATGT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PscI ACATGT 1 cut(s) 157
PsiI TTATAA 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 295, 311
PspPI GGNCC 2 cut(s) 81, 310
PstI CTGCAG 1 cut(s) 223
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 25, 112
Sau96I GGNCC 2 cut(s) 81, 310
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 273, 328
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 81
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 6 cut(s) 11, 165, 176, 188, 230, 255
SsiI CCGC 3 cut(s) 84, 291, 343
SspMI CTAG 1 cut(s) 57
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 174
TasI AATT 6 cut(s) 11, 165, 176, 188, 230, 255
TatI WGTACW 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 223, 324
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 81
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 3 cut(s) 176, 188, 230
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 57
Zsp2I ATGCAT 2 cut(s) 24, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.