Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Reverse (-)

345302 .. 346146

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgggtagcctctggggttcttcagatctttcactgatggtggttattgctttcgggattttgattctaaattcagctatgggtaactgggatttgaattttgtggtcttagtattggattcgaacgtacattggagctgtggatttgagattgaaggcaaaaatgtcaaaatttgggccaagaaggttcatgtctgggagaaggttttggagagggacttggtgttatttaaaggcaccaaggcgaaacagactgaggatgttgcttataggatcactgctaaggcctcggatgttgcgcatactatgtatgctgttcttaattatactgttgtacccaatgctctgcagatatcagttatggtggtgaagatagtggtcatcagccgtattttatctgggatttcagctgtggtgagcaagttttgttcgtgtaaagtccttggttatgtacttggtttagggcgtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

157

Amino Acids

17.26

Weight (kDa)

9.2

Isoelectric Point (pI)

22.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	3 cut(s)	70, 97, 171
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	3 cut(s)	129, 336, 453
AgsI	TTSAA	2 cut(s)	97, 155
AluBI	AGCT	3 cut(s)	77, 138, 410
AluI	AGCT	3 cut(s)	77, 138, 410
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	177, 285
ApoI	RAATTY	3 cut(s)	70, 97, 171
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	379, 427
AsuII	TTCGAA	1 cut(s)	122
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanI	GGYRCC	1 cut(s)	236
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	240, 288, 442
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	240, 288, 442
BseGI	GGATG	2 cut(s)	265, 298
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	179, 287
BshNI	GGYRCC	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	179, 287
Bsp119I	TTCGAA	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	25, 273
BspANI	GGCC	2 cut(s)	179, 287
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	240, 288, 442
BssMI	GATC	2 cut(s)	25, 273
BssT1I	CCWWGG	2 cut(s)	240, 442
Bst4CI	ACNGT	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	109, 255, 282
BstF5I	GGATG	2 cut(s)	265, 298
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	28, 276
BstMBI	GATC	2 cut(s)	25, 273
BstSFI	CTRYAG	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	179, 287
BtsCI	GGATG	2 cut(s)	265, 298
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	32, 276
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	128, 335, 452
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	7 cut(s)	9, 77, 138, 179, 287, 387, 410
CviKI_1	RGCY	7 cut(s)	9, 77, 138, 179, 287, 387, 410
CviQI	GTAC	3 cut(s)	128, 335, 452
DdeI	CTNAG	3 cut(s)	109, 255, 282
DpnI	GATC	2 cut(s)	27, 275
DpnII	GATC	2 cut(s)	25, 273
DraI	TTTAAA	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	240, 442
Eco147I	AGGCCT	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	240, 442
ErhI	CCWWGG	2 cut(s)	240, 442
FaeI	CATG	1 cut(s)	194
FaiI	YATR	9 cut(s)	80, 192, 270, 303, 308, 312, 327, 362, 450
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	190
FokI	GGATG	2 cut(s)	272, 305
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	179, 287
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	64, 119
HphI	GGTGA	2 cut(s)	379, 427
Hpy188I	TCNGA	2 cut(s)	25, 292
Hpy188III	TCNNGA	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	149, 178, 196
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	349
HpyF3I	CTNAG	3 cut(s)	109, 255, 282
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	25, 273
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	73, 181, 384
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	27, 275
MboI	GATC	2 cut(s)	25, 273
MboII	GAAGA	2 cut(s)	12, 382
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	4 cut(s)	70, 97, 171, 322
MnlI	CCTC	4 cut(s)	20, 207, 250, 298
MseI	TTAA	2 cut(s)	231, 321
MspA1I	CMGCKG	1 cut(s)	410
NdeII	GATC	2 cut(s)	25, 273
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	64, 119
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	129, 336, 453
RsaNI	GTAC	3 cut(s)	128, 335, 452
SaqAI	TTAA	2 cut(s)	231, 321
Sau3AI	GATC	2 cut(s)	25, 273
Sau96I	GGNCC	1 cut(s)	177
SetI	ASST	6 cut(s)	79, 129, 140, 189, 207, 412
SfcI	CTRYAG	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	122
Sse9I	AATT	4 cut(s)	70, 97, 171, 322
SseBI	AGGCCT	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	240, 442
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	70, 97, 171, 322
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	64, 119
Tru1I	TTAA	2 cut(s)	231, 321
Tru9I	TTAA	2 cut(s)	231, 321
TscAI	CASTG	2 cut(s)	39, 283
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	39, 283
XapI	RAATTY	3 cut(s)	70, 97, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.