Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010930.1

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

20209 .. 20857

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010930.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgggtaactgggatttgaattttgtggtctcagtattggattcgaagattggagctgtggatttgagattgaaggcaaaaatgtcaaaatttaggccaagaaggctcacatgggaggctgcattgaacgctgcgttttgggttcgggttcatgcctgggagaaggttttggagagcgacttggtgttatttaaaggcaccaaggtgaaacagactgaggatgttgcttataggatcactgctaaggcctcggatgttgcgtatactatgtatgttgttctcaatactgttatacccaatgctctgcagatatcggttatggtggcgaagatagtggtcatcagccctattttatctgggatttcagctgtggtgagcaagttttgttcatgtaaagtccctggttatgtgcttggtttagggcgtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

143

Amino Acids

15.82

Weight (kDa)

9.8

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	19, 89
AgsI	TTSAA	3 cut(s)	19, 73, 127
AjnI	CCWGG	2 cut(s)	155, 400
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	56, 368
AluI	AGCT	2 cut(s)	56, 368
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	95, 246
ApeKI	GCWGC	2 cut(s)	119, 131
ApoI	RAATTY	2 cut(s)	19, 89
AsuHPI	GGTGA	2 cut(s)	217, 385
AsuII	TTCGAA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	106, 118
BciT130I	CCWGG	2 cut(s)	157, 402
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	120, 132
BlsI	GCNGC	2 cut(s)	121, 133
Bme1390I	CCNGG	2 cut(s)	157, 402
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	2 cut(s)	157, 402
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	4 cut(s)	156, 201, 249, 400
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	157, 402
BseDI	CCNNGG	4 cut(s)	156, 201, 249, 400
BseGI	GGATG	2 cut(s)	226, 259
BseMII	CTCAG	2 cut(s)	45, 207
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	106, 118
BshFI	GGCC	2 cut(s)	97, 248
BshNI	GGYRCC	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	97, 248
Bso31I	GGTCTC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	97, 248
BspCNI	CTCAG	2 cut(s)	44, 208
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	4 cut(s)	156, 201, 249, 400
BssMI	GATC	1 cut(s)	234
BssNAI	GTATAC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	201
Bst1107I	GTATAC	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	157, 402
Bst4CI	ACNGT	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	31, 216, 243
BstF5I	GGATG	2 cut(s)	226, 259
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 128
BstNI	CCWGG	2 cut(s)	157, 402
BstSCI	CCNGG	2 cut(s)	155, 400
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	106, 118
BstZ17I	GTATAC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	97, 248
BtsCI	GGATG	2 cut(s)	226, 259
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
CviAII	CATG	3 cut(s)	111, 152, 390
CviJI	RGCY	7 cut(s)	56, 97, 106, 119, 248, 345, 368
CviKI_1	RGCY	7 cut(s)	56, 97, 106, 119, 248, 345, 368
DdeI	CTNAG	3 cut(s)	31, 216, 243
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DraI	TTTAAA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	248
Eco31I	GGTCTC	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	155, 400
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	114, 155, 393
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	110, 151, 389
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	120, 132
FokI	GGATG	2 cut(s)	233, 266
Fsp4HI	GCNGC	2 cut(s)	120, 132
GluI	GCNGC	2 cut(s)	120, 132
HaeIII	GGCC	2 cut(s)	97, 248
Hin1II	CATG	3 cut(s)	114, 155, 393
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	2 cut(s)	217, 385
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	3 cut(s)	67, 96, 157
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	122, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 128
HpyF3I	CTNAG	3 cut(s)	31, 216, 243
Hsp92II	CATG	3 cut(s)	114, 155, 393
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	142, 169, 342, 387, 414
Lsp1109I	GCAGC	2 cut(s)	106, 118
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	2 cut(s)	58, 340
MluCI	AATT	2 cut(s)	19, 89
MnlI	CCTC	3 cut(s)	109, 211, 259
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	157, 402
MvaI	CCWGG	2 cut(s)	157, 402
MwoI	GCNNNNNNNGC	2 cut(s)	103, 128
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	3 cut(s)	114, 155, 393
NlaIV	GGNNCC	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	121, 133
Psp6I	CCWGG	2 cut(s)	155, 400
PspGI	CCWGG	2 cut(s)	155, 400
PspN4I	GGNNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	120, 132
Sau3AI	GATC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	157, 402
SetI	ASST	4 cut(s)	58, 168, 207, 370
SfcI	CTRYAG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	19, 89
SseBI	AGGCCT	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	155, 400
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	19, 89
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	119, 131
TspDTI	ATGAA	2 cut(s)	140, 378
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	19, 89
XmiI	GTMKAC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.