Rroxscaffold_2G00110400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017020
Physical Location & Seq
Forward (+)
34689013 .. 34696046
7034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110400.1

Sequence Viewer

Length: 384 bp
ATGGCGCACCTAAAGGAGGGAGTAATGAGCGGAACTCTAAAAGTTAAGGGACAACAAAATGGACGTGTGGGTCCATACAACAACCTTGCAAAGGAAGGAAACTGCCGATTGATGCACGGACACGTGGCAACATTGGCCAACGTGGGAGAGGCAAAGCCCGCGCTGCTGGCCGTGGTGGTGCTGCCACCAACCTCCCTAGGGGAAGTCCTAATGTACAAGATTCAAGGAGGGAAACGAATTGCCACGGCACCTCAACAGCGTAGAGATGGCATTGACGCCATACATGGCACCAAGGAAAAACAGACTGAGGGTGTTGCTTATAGGATCACTGCTAAGGCCTCAGATGTTGCGCATACTATGTATGCTGTTCTTAATGCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.49

Weight (kDa)

9.76

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 69
Acc16I TGCGCA 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 247, 287
AccBSI CCGCTC 1 cut(s) 30
AccII CGCG 1 cut(s) 161
AciI CCGC 2 cut(s) 30, 159
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 2 cut(s) 135, 168
AcvI CACGTG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 16, 91, 198
AflIII ACRYGT 2 cut(s) 64, 121
AgsI TTSAA 1 cut(s) 224
AjiI CACGTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 332
AoxI GGCC 3 cut(s) 135, 168, 336
ApeKI GCWGC 2 cut(s) 163, 181
AspA2I CCTAGG 1 cut(s) 196
AspLEI GCGC 3 cut(s) 7, 163, 352
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
AvrII CCTAGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 2 cut(s) 247, 287
BbrPI CACGTG 1 cut(s) 124
BbvI GCAGC 2 cut(s) 150, 168
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 155, 261
BfaI CTAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 164, 182
BlnI CCTAGG 1 cut(s) 196
BlsI GCNGC 2 cut(s) 165, 183
Bme18I GGWCC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 3 cut(s) 72, 249, 289
BmsI GCATC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 19, 51
Bpu10I CCTNAGC 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 171, 196, 243, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 91, 198
BseDI CCNNGG 4 cut(s) 171, 196, 243, 291
BseLI CCNNNNNNNGG 3 cut(s) 16, 91, 198
BseMII CTCAG 2 cut(s) 297, 354
BseXI GCAGC 2 cut(s) 150, 168
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 137, 170, 338
BshNI GGYRCC 2 cut(s) 247, 287
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 16, 91, 198
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 3 cut(s) 137, 170, 338
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 2 cut(s) 30, 159
BspANI GGCC 3 cut(s) 137, 170, 338
BspCNI CTCAG 2 cut(s) 298, 353
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 72, 249, 289
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 2 cut(s) 247, 287
BsrBI CCGCTC 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 213
BssECI CCNNGG 4 cut(s) 171, 196, 243, 291
BssMI GATC 1 cut(s) 324
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 196, 291
BstACI GRCGYC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 159, 168
BstDEI CTNAG 3 cut(s) 306, 333, 340
BstDSI CCRYGG 2 cut(s) 171, 243
BstENI CCTNNNNNAGG 2 cut(s) 14, 89
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 3 cut(s) 7, 163, 352
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 4 cut(s) 134, 158, 163, 167
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 150, 168
BsuRI GGCC 3 cut(s) 137, 170, 338
BtgI CCRYGG 2 cut(s) 171, 243
BtrI CACGTC 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 159, 168
CfoI GCGC 3 cut(s) 7, 163, 352
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 284
CviJI RGCY 4 cut(s) 137, 157, 170, 338
CviKI_1 RGCY 4 cut(s) 137, 157, 170, 338
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 306, 333, 340
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
DrdI GACNNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 135, 168
Eco130I CCWWGG 2 cut(s) 196, 291
Eco147I AGGCCT 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 71
Eco72I CACGTG 1 cut(s) 124
EcoNI CCTNNNNNAGG 2 cut(s) 14, 89
EcoT14I CCWWGG 2 cut(s) 196, 291
ErhI CCWWGG 2 cut(s) 196, 291
FaeI CATG 1 cut(s) 287
FaiI YATR 7 cut(s) 76, 281, 285, 321, 354, 359, 363
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 283
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 164, 182
Fsp4HI GCNGC 2 cut(s) 164, 182
FspBI CTAG 1 cut(s) 197
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 3 cut(s) 6, 162, 351
GluI GCNGC 2 cut(s) 164, 182
HaeIII GGCC 3 cut(s) 137, 170, 338
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 7, 163, 352
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 3 cut(s) 5, 161, 350
HinP1I GCGC 3 cut(s) 5, 161, 350
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 3 cut(s) 64, 123, 141
HpyCH4V TGCA 2 cut(s) 89, 115
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 158, 163, 167
HpyF3I CTNAG 3 cut(s) 306, 333, 340
HpySE526I ACGT 3 cut(s) 64, 123, 141
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 3 cut(s) 5, 161, 350
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 1 cut(s) 152
Lsp1109I GCAGC 2 cut(s) 150, 168
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 197
MaeII ACGT 3 cut(s) 64, 123, 141
MalI GATC 1 cut(s) 326
MbiI CCGCTC 1 cut(s) 30
MboI GATC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 137
MnlI CCTC 7 cut(s) 10, 142, 202, 221, 261, 301, 349
Mox20I TGGCCA 1 cut(s) 137
MscI TGGCCA 1 cut(s) 137
MseI TTAA 2 cut(s) 45, 372
Msp20I TGGCCA 1 cut(s) 137
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 134, 158, 163, 167
NdeII GATC 1 cut(s) 324
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 3 cut(s) 72, 249, 289
NsbI TGCGCA 1 cut(s) 351
PceI AGGCCT 1 cut(s) 338
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 165, 183
PmaCI CACGTG 1 cut(s) 124
PmlI CACGTG 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 124
PspCI CACGTG 1 cut(s) 124
PspN4I GGNNCC 3 cut(s) 72, 249, 289
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 45, 372
SatI GCNGC 2 cut(s) 164, 182
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 71
SetI ASST 7 cut(s) 12, 67, 87, 126, 144, 194, 253
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 71
Sse9I AATT 1 cut(s) 237
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 2 cut(s) 30, 159
SspMI CTAG 1 cut(s) 197
StuI AGGCCT 1 cut(s) 338
StyI CCWWGG 2 cut(s) 196, 291
TaiI ACGT 3 cut(s) 67, 126, 144
TasI AATT 1 cut(s) 237
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 45, 372
Tru9I TTAA 2 cut(s) 45, 372
TscAI CASTG 1 cut(s) 334
TseI GCWGC 2 cut(s) 163, 181
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 2 cut(s) 14, 89
XmaJI CCTAGG 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.