Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

465730 .. 468419

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000118.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgatctatgtcaaaaaccgaaccttcgacgccaatttggtggccggagactgtcggaatcggaaaatatcggcgttgactcaaaactactacagtgaccgtcctcttcttctcgttgctgcaccttccacagtttatattaagctacgaaacgaacccagaaatgaagagaaggaagagagctttccaacaacatcttatacgtcaaaatccgtcgccggatggaggagttatggccggaagaaggttcgggttcgggttcatgtctgggagaaggttctggagagggacttggtgttatttaaaggcaccaaggcgaaacagactgaggatgttgcttataggatcactgctaaggcctcggatgttgtgcatactatgtatgctgttcttaattatactgttgtacccaatgctctgcagatatcagttatggtggtgaagatagtggtcatcagccgtattttatctgggatttcagctgtggtgagcaagttttgttcgtgtaaagtccctggttatgtgcttggtttagggcgtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

9.91

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	42, 235
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	225, 244
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	3 cut(s)	145, 183, 482
AluI	AGCT	3 cut(s)	145, 183, 482
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	42, 235, 357
ApeKI	GCWGC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	451, 499
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	91, 419
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	312, 360, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 244
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	312, 360, 514
BseGI	GGATG	3 cut(s)	227, 337, 370
BseLI	CCNNNNNNNGG	2 cut(s)	225, 244
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	44, 237, 359
BshNI	GGYRCC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	45, 219, 238
BslFI	GGGAC	2 cut(s)	302, 497
BslI	CCNNNNNNNGG	2 cut(s)	225, 244
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	302, 497
BsnI	GGCC	3 cut(s)	44, 237, 359
Bsp143I	GATC	2 cut(s)	3, 345
BspANI	GGCC	3 cut(s)	44, 237, 359
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	312, 360, 514
BssMI	GATC	2 cut(s)	3, 345
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	5 cut(s)	53, 95, 101, 133, 403
Bst6I	CTCTTC	3 cut(s)	111, 162, 171
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	327, 354
BstF5I	GGATG	3 cut(s)	227, 337, 370
BstKTI	GATC	2 cut(s)	6, 348
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	3, 345
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	2 cut(s)	91, 419
BstV1I	GCAGC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	44, 237, 359
BtsCI	GGATG	3 cut(s)	227, 337, 370
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	100, 348
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	44, 145, 183, 237, 359, 459, 482
CviKI_1	RGCY	7 cut(s)	44, 145, 183, 237, 359, 459, 482
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	327, 354
DpnI	GATC	2 cut(s)	5, 347
DpnII	GATC	2 cut(s)	3, 345
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	2 cut(s)	42, 235
Eam1104I	CTCTTC	3 cut(s)	111, 162, 171
EarI	CTCTTC	3 cut(s)	111, 162, 171
Eco130I	CCWWGG	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	359
Eco32I	GATATC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	266
FaqI	GGGAC	2 cut(s)	302, 497
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	234, 344, 377
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	44, 237, 359
HapII	CCGG	3 cut(s)	45, 219, 238
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	58, 79
HpaII	CCGG	3 cut(s)	45, 219, 238
HphI	GGTGA	2 cut(s)	451, 499
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	57, 63, 364
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	2 cut(s)	32, 218
HpyAV	CCTTC	5 cut(s)	34, 135, 166, 238, 268
HpyCH4III	ACNGT	5 cut(s)	53, 95, 101, 133, 403
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	122, 373, 421
HpyF3I	CTNAG	2 cut(s)	327, 354
HpySE526I	ACGT	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	3, 345
LpnPI	CCDG	9 cut(s)	58, 172, 232, 251, 253, 266, 456, 501, 528
Lsp1109I	GCAGC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	5, 347
MboI	GATC	2 cut(s)	3, 345
MboII	GAAGA	6 cut(s)	98, 101, 179, 188, 253, 454
MluCI	AATT	2 cut(s)	34, 394
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	2 cut(s)	35, 212
MnlI	CCTC	5 cut(s)	114, 219, 279, 322, 370
MseI	TTAA	3 cut(s)	141, 303, 393
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	3 cut(s)	45, 219, 238
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
NdeII	GATC	2 cut(s)	3, 345
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	141, 303, 393
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	3, 345
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	516
SetI	ASST	8 cut(s)	26, 127, 147, 185, 206, 249, 279, 484
SfcI	CTRYAG	2 cut(s)	91, 419
Sse9I	AATT	2 cut(s)	34, 394
SseBI	AGGCCT	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	5 cut(s)	53, 95, 101, 133, 403
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	34, 394
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	141, 303, 393
Tru9I	TTAA	3 cut(s)	141, 303, 393
TscAI	CASTG	2 cut(s)	100, 355
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	180, 251
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	100, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.