Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004301.1

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

110144 .. 116247

Gene Structure 6104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004301.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgatctatgtcaaaaaccgaaccttcgacgccaatttggtggccggagactgctggaatcggaaaatatcgacgctgcctcaaaaatgctacagagaccgtcatcttcttctcgttgctgcaccttccacagttcatattaagctacgaaacggacccagaaatcaagagaaggaagacagctttccaacgacatcttacacgtcaaaatccgtcgccggatggaggacttatggccggaagaaggtgacaaggtcggagaggaagagagaatcggggagagagaaaggagagggctcggatgaattacaagagcttgagaatgatgttcaaaatgaaggtcgtgaagggcttatgtggcaagaaatcattggagaaaattatgtggaggaagatgagattactagggtttacacggcttggagaacaaaggaggccgtcccctatatattctccacttttctcaacgacaaggggcaaaccacgaagttcaagcaaggccaaggaagagaagaagaagccgtgatctattcctccaccatccacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.24

Weight (kDa)

8.45

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	42, 235
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	225, 244
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	332, 493
AjiI	CACGTC	1 cut(s)	204
AluBI	AGCT	3 cut(s)	145, 183, 316
AluI	AGCT	3 cut(s)	145, 183, 316
Alw26I	GTCTC	2 cut(s)	42, 90
AoxI	GGCC	4 cut(s)	42, 235, 435, 499
ApeKI	GCWGC	2 cut(s)	76, 119
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	63, 106
BccI	CCATC	2 cut(s)	216, 548
BceAI	ACGGC	3 cut(s)	422, 432, 506
BcoDI	GTCTC	2 cut(s)	42, 90
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	77, 120
BlsI	GCNGC	2 cut(s)	78, 121
Bme18I	GGWCC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 244
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	3 cut(s)	227, 307, 540
BseLI	CCNNNNNNNGG	2 cut(s)	225, 244
BseXI	GCAGC	2 cut(s)	63, 106
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	44, 237, 437, 501
BsiSI	CCGG	3 cut(s)	45, 219, 238
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	225, 244
BsmAI	GTCTC	2 cut(s)	42, 90
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	4 cut(s)	44, 237, 437, 501
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	3, 525
BspANI	GGCC	4 cut(s)	44, 237, 437, 501
BspLI	GGNNCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	2 cut(s)	3, 525
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	101, 133
Bst6I	CTCTTC	2 cut(s)	260, 502
BstACI	GRCGYC	1 cut(s)	30
BstF5I	GGATG	3 cut(s)	227, 307, 540
BstKTI	GATC	2 cut(s)	6, 528
BstMAI	GTCTC	2 cut(s)	42, 90
BstMBI	GATC	2 cut(s)	3, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	63, 106
BstV2I	GAAGAC	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	44, 237, 437, 501
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	227, 307, 540
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	2 cut(s)	38, 82
DpnI	GATC	2 cut(s)	5, 527
DpnII	GATC	2 cut(s)	3, 525
EaeI	YGGCCR	2 cut(s)	42, 235
Eam1104I	CTCTTC	2 cut(s)	260, 502
EarI	CTCTTC	2 cut(s)	260, 502
Eco130I	CCWWGG	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	502
FaiI	YATR	7 cut(s)	9, 138, 234, 356, 384, 447, 449
FaqI	GGGAC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	77, 120
FokI	GGATG	3 cut(s)	234, 314, 527
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	77, 120
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	2 cut(s)	77, 120
HaeIII	GGCC	4 cut(s)	44, 237, 437, 501
HapII	CCGG	3 cut(s)	45, 219, 238
HgaI	GACGC	2 cut(s)	38, 82
Hin1I	GRCGYC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	58, 272
HpaII	CCGG	3 cut(s)	45, 219, 238
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	63, 259, 301
Hpy188III	TCNNGA	2 cut(s)	167, 344
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	3 cut(s)	32, 76, 218
HpyAV	CCTTC	6 cut(s)	34, 135, 166, 238, 332, 341
HpyCH4III	ACNGT	2 cut(s)	101, 133
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	3, 525
LpnPI	CCDG	5 cut(s)	40, 58, 172, 232, 251
Lsp1109I	GCAGC	2 cut(s)	63, 106
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	5, 527
MboI	GATC	2 cut(s)	3, 525
MboII	GAAGA	9 cut(s)	98, 101, 188, 253, 277, 404, 519, 524, 527
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	34, 305, 379
MmeI	TCCRAC	2 cut(s)	212, 237
MnlI	CCTC	7 cut(s)	90, 219, 255, 286, 382, 427, 544
MseI	TTAA	1 cut(s)	141
MspI	CCGG	3 cut(s)	45, 219, 238
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	2 cut(s)	3, 525
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	58, 272
PflFI	GACNNNGTC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	78, 121
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
PsyI	GACNNNGTC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	77, 120
Sau3AI	GATC	2 cut(s)	3, 525
Sau96I	GGNCC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	299
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	34, 305, 379
SspMI	CTAG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	101, 133
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	27, 71
TasI	AATT	3 cut(s)	34, 305, 379
TfiI	GAWTC	2 cut(s)	58, 272
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	76, 119
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	125, 318, 351
TspGWI	ACGGA	2 cut(s)	168, 202
Tth111I	GACNNNGTC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	155
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.