Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

38264019 .. 38267058

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG340300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGTAACTGGGATTTGAATTTTGTGGTCTCAGTATTGGATTCGAAGATTGGAGCTGTGGATTTGAGATTGAAGGCAAAAATGTCTAAATTTGGGCCAAGAAGGATCACTGCTAAGGCCTCGGATGTTGCGTATACTATGTATGTTGTTCTCAATACTGTTATACCCAATGCTCTGCAGATATCAGTTATGGTGGCGAAGATAGTGGTCATCGGCCCTATTTTATCTGGGATTTCAGCTGTGGTGAGCAAGTTTTGTTCATTGAGAAACTCACCAACGACATCTAACAAGGCCCAGCTCAGCACTGCTGTGCTGTCTGCTTATCTGAATGAGGTCCTCCCTGCAATTCTATTTGTGAAAGCAAGCAATGCAGAGTTGTGGGAGAATATAGGTTTAAGAAGCTTGCTTACACTAACCCCTGCGACCAATTTGAAAAAGAAGAAAATGAAGGCACTTATTCCTCAGGTCACACAGATTATATATTTTAGAGGGCTTTCTATGCTGTGTGTTGGTCCAATGATGTTGTGTAGTAGTTCAATCGATATCTTTGGCATAGTTTCAATCCAATTCAGGTGTAACAAGAACATTTTCAAGGTGATGTTGGAGTATGACCAATATCCAGATTTTAAGAAACCAGAACATGACCAATATGTTTATCGCCACCCCAATGGATTGTGTGTGATTGGTTTGGCTGCAACACATGTGGCTCTTAAGGAAGAAGGGGGTATCACAGCCATTGATTTCAATGTTGGAAAATTGGATCGCAGTGGGCTTAAGGTTACTGGAAAGCGCAAGAAGAAGGATAATTTTTATATTGTTCTAGTTTGTTTTCATTATCTAATGCCTAGCACTTGGAGTCCAACTCAGCTTTGTTTGAAAGTGAACGATAGATTAAGCAAGCAGCCAGAATTGCTTAATATAGCGCTGCGAAGCCAAGATTTTCATATGCTCTTATGGGAAATAATATCAATTGCCTCTGGCTACAGTACCGGCGCGGTATCCGCACCATACCCGCACGTTGCTTGCCTATTGGCCAAGCTTAATGCAAAGGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

352

Amino Acids

39.01

Weight (kDa)

9.59

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	995
AciI	CCGC	3 cut(s)	995, 1002, 1013
AclWI	GGATC	2 cut(s)	113, 768
AcoI	YGGCCR	1 cut(s)	1032
AcsI	RAATTY	2 cut(s)	19, 89
AfaI	GTAC	1 cut(s)	988
AfeI	AGCGCT	1 cut(s)	924
AflII	CTTAAG	2 cut(s)	710, 773
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	8 cut(s)	19, 73, 433, 537, 561, 592, 745, 877
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	6 cut(s)	56, 239, 298, 402, 868, 1039
AluI	AGCT	6 cut(s)	56, 239, 298, 402, 868, 1039
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	113, 768
Aor51HI	AGCGCT	1 cut(s)	924
AoxI	GGCC	5 cut(s)	95, 117, 214, 291, 1032
ApeKI	GCWGC	3 cut(s)	692, 901, 925
ApoI	RAATTY	2 cut(s)	19, 89
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	3 cut(s)	792, 925, 995
AspS9I	GGNCC	5 cut(s)	95, 215, 292, 334, 512
AsuHPI	GGTGA	3 cut(s)	256, 264, 607
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	334, 512
AxyI	CCTNAGG	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	1034
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
BbvI	GCAGC	3 cut(s)	679, 912, 913
BciVI	GTATCC	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	821, 846
BfmI	CTRYAG	2 cut(s)	176, 982
BfoI	RGCGCY	1 cut(s)	926
BfrI	CTTAAG	2 cut(s)	710, 773
BfuI	GTATCC	1 cut(s)	1009
BisI	GCNGC	3 cut(s)	693, 902, 926
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	3 cut(s)	694, 903, 927
Bme18I	GGWCC	2 cut(s)	334, 512
BmgT120I	GGNCC	5 cut(s)	95, 215, 292, 334, 512
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	847, 879
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	989
Bse1I	ACTGG	2 cut(s)	14, 787
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	4 cut(s)	45, 313, 476, 878
BseNI	ACTGG	2 cut(s)	14, 787
BseXI	GCAGC	3 cut(s)	679, 912, 913
BseYI	CCCAGC	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	995
BshFI	GGCC	5 cut(s)	97, 119, 216, 293, 1034
BshVI	ATCGAT	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	990
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	5 cut(s)	97, 119, 216, 293, 1034
Bso31I	GGTCTC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	105, 760
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	3 cut(s)	995, 1002, 1013
BspANI	GGCC	5 cut(s)	97, 119, 216, 293, 1034
BspCNI	CTCAG	4 cut(s)	44, 312, 475, 877
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	995
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	113, 768
BspT104I	TTCGAA	1 cut(s)	44
BspTI	CTTAAG	2 cut(s)	710, 773
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	989
BsrI	ACTGG	2 cut(s)	14, 787
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	105, 760
BssNAI	GTATAC	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	160, 986
BstAFI	CTTAAG	2 cut(s)	710, 773
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	4 cut(s)	364, 404, 899, 1024
BstDEI	CTNAG	5 cut(s)	31, 114, 299, 462, 864
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	995
BstH2I	RGCGCY	1 cut(s)	926
BstHHI	GCGC	3 cut(s)	792, 925, 995
BstKTI	GATC	2 cut(s)	108, 763
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	105, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 499, 910, 1001
BstNSI	RCATGY	1 cut(s)	704
BstSFI	CTRYAG	2 cut(s)	176, 982
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	3 cut(s)	679, 912, 913
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstZ17I	GTATAC	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	5 cut(s)	97, 119, 216, 293, 1034
BsuTUI	ATCGAT	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	3 cut(s)	108, 303, 772
BtsIMutI	CAGTG	3 cut(s)	108, 303, 772
Cac8I	GCNNGC	4 cut(s)	364, 404, 899, 1024
CfoI	GCGC	3 cut(s)	792, 925, 995
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	5 cut(s)	95, 215, 292, 334, 512
ClaI	ATCGAT	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	987
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	2 cut(s)	641, 701
CviQI	GTAC	1 cut(s)	987
DdeI	CTNAG	5 cut(s)	31, 114, 299, 462, 864
DpnI	GATC	2 cut(s)	107, 762
DpnII	GATC	2 cut(s)	105, 760
EaeI	YGGCCR	1 cut(s)	1032
Eco147I	AGGCCT	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	34
Eco32I	GATATC	2 cut(s)	183, 544
Eco47I	GGWCC	2 cut(s)	334, 512
Eco47III	AGCGCT	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRV	GATATC	2 cut(s)	183, 544
FaeI	CATG	2 cut(s)	644, 704
FatI	CATG	2 cut(s)	640, 700
FauI	CCCGC	1 cut(s)	1020
FauNDI	CATATG	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	693, 902, 926
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	693, 902, 926
FspBI	CTAG	2 cut(s)	821, 846
GlaI	GCGC	3 cut(s)	791, 924, 994
GluI	GCNGC	3 cut(s)	693, 902, 926
GsaI	CCCAGC	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	926
HaeIII	GGCC	5 cut(s)	97, 119, 216, 293, 1034
HapII	CCGG	1 cut(s)	990
HhaI	GCGC	3 cut(s)	792, 925, 995
Hin1II	CATG	2 cut(s)	644, 704
Hin6I	GCGC	3 cut(s)	790, 923, 993
HinP1I	GCGC	3 cut(s)	790, 923, 993
HindIII	AAGCTT	2 cut(s)	400, 1037
HinfI	GANTC	2 cut(s)	41, 856
HpaII	CCGG	1 cut(s)	990
HphI	GGTGA	3 cut(s)	256, 264, 607
Hpy166II	GTNNAC	2 cut(s)	135, 883
Hpy188I	TCNGA	2 cut(s)	124, 327
Hpy188III	TCNNGA	1 cut(s)	620
Hpy8I	GTNNAC	2 cut(s)	135, 883
HpyAV	CCTTC	5 cut(s)	67, 96, 442, 713, 793
HpyCH4III	ACNGT	2 cut(s)	160, 986
HpyCH4IV	ACGT	1 cut(s)	1017
HpyCH4V	TGCA	5 cut(s)	178, 344, 371, 695, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 499, 910, 1001
HpyF3I	CTNAG	5 cut(s)	31, 114, 299, 462, 864
HpySE526I	ACGT	1 cut(s)	1017
Hsp92II	CATG	2 cut(s)	644, 704
HspAI	GCGC	3 cut(s)	790, 923, 993
Kzo9I	GATC	2 cut(s)	105, 760
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	3 cut(s)	679, 912, 913
MaeI	CTAG	2 cut(s)	821, 846
MaeII	ACGT	1 cut(s)	1017
MaeIII	GTNAC	4 cut(s)	5, 466, 575, 778
MalI	GATC	2 cut(s)	107, 762
MboI	GATC	2 cut(s)	105, 760
MboII	GAAGA	5 cut(s)	58, 211, 451, 728, 808
MfeI	CAATTG	1 cut(s)	969
MlsI	TGGCCA	1 cut(s)	1034
MluCI	AATT	9 cut(s)	19, 89, 345, 427, 566, 755, 805, 908, 969
MluNI	TGGCCA	1 cut(s)	1034
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	3 cut(s)	582, 730, 884
MnlI	CCTC	6 cut(s)	130, 325, 347, 471, 482, 985
Mox20I	TGGCCA	1 cut(s)	1034
MroXI	GAANNNNTTC	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	1034
MseI	TTAA	7 cut(s)	395, 627, 711, 774, 893, 915, 1041
MslI	CAYNNNNRTG	2 cut(s)	308, 666
Msp20I	TGGCCA	1 cut(s)	1034
MspA1I	CMGCKG	1 cut(s)	239
MspCI	CTTAAG	2 cut(s)	710, 773
MspI	CCGG	1 cut(s)	990
MunI	CAATTG	1 cut(s)	969
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	4 cut(s)	368, 499, 910, 1001
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	2 cut(s)	105, 760
NlaIII	CATG	2 cut(s)	644, 704
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	119
PciI	ACATGT	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	694, 903, 927
PleI	GAGTC	1 cut(s)	864
PpsI	GAGTC	1 cut(s)	864
PpuMI	RGGWCCY	1 cut(s)	334
PscI	ACATGT	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	294
PspPI	GGNCC	5 cut(s)	95, 215, 292, 334, 512
PspPPI	RGGWCCY	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	988
RsaNI	GTAC	1 cut(s)	987
RseI	CAYNNNNRTG	2 cut(s)	308, 666
SaqAI	TTAA	7 cut(s)	395, 627, 711, 774, 893, 915, 1041
SatI	GCNGC	3 cut(s)	693, 902, 926
Sau3AI	GATC	2 cut(s)	105, 760
Sau96I	GGNCC	5 cut(s)	95, 215, 292, 334, 512
SchI	GAGTC	1 cut(s)	865
SfcI	CTRYAG	2 cut(s)	176, 982
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	2 cut(s)	334, 512
SmiMI	CAYNNNNRTG	2 cut(s)	308, 666
SmlI	CTYRAG	2 cut(s)	710, 773
SmoI	CTYRAG	2 cut(s)	710, 773
Sse9I	AATT	9 cut(s)	19, 89, 345, 427, 566, 755, 805, 908, 969
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	995, 1002, 1013
SspMI	CTAG	2 cut(s)	821, 846
StuI	AGGCCT	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	160, 986
TaiI	ACGT	1 cut(s)	1020
TaqI	TCGA	2 cut(s)	44, 540
TasI	AATT	9 cut(s)	19, 89, 345, 427, 566, 755, 805, 908, 969
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	7 cut(s)	395, 627, 711, 774, 893, 915, 1041
Tru9I	TTAA	7 cut(s)	395, 627, 711, 774, 893, 915, 1041
TscAI	CASTG	3 cut(s)	115, 310, 772
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	692, 901, 925
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	249, 461, 821, 932
TspRI	CASTG	3 cut(s)	115, 310, 772
Vha464I	CTTAAG	2 cut(s)	710, 773
VpaK11BI	GGWCC	2 cut(s)	334, 512
XapI	RAATTY	2 cut(s)	19, 89
XceI	RCATGY	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	2 cut(s)	821, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.