Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

32892568 .. 32894091

Gene Structure 1524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAGCAGGCGTGACTATGGGAGGCACCAAGGCGAAACAGACTGAGGATGTTGCTTCTAGGATCACTACTAAGGCCTCGGATGTTGGGCATACTATGTATGCTGTTCTTAATATATCGATTATGGTGGCGAAGATAGTGGTCATCAGCCCTATTTTATCTGGGATTTCAGCTGTGGTGAGCAAGTTTTGTTCGTGTAAAGTCCCTGTGAGAAACTCACCAACGACATCTAACAAAGCCCAGCTCAGCACTGCTGCGTTGTCTGCTTATCTGAATGAGGTCCTCCCTGCAATTCTATTTGTGAAAGCAAGCAATGCAGAGTTGTGGGAGAATATAGGTTTAAGAAGCTTGCTTACACTGACCTCTACGACCAATTTGAAAAAGAAGAAAATGAAGGCAGTTTTTCCTCAGGTCACACAGATTATATATTTTGGAGGGCTTTCTATGCTGTGTGTTGCTCCAATGGTGTTGTGTAGTAGTTCAATCGATATCTTTGGCATAGTTAATCCAATTCAGATGGTTCTTGCAGAAGTAGAAGATTATGTGTTCTTAGTTGAAAGCTGGCATATTAAAAGGACTGCCCTTGTGGAGTGGAAACCTCAATTTGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

205

Amino Acids

22.09

Weight (kDa)

9.19

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	379, 483, 557
AluBI	AGCT	4 cut(s)	173, 244, 348, 561
AluI	AGCT	4 cut(s)	173, 244, 348, 561
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	5, 254
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	190, 210
AvaII	GGWCC	1 cut(s)	280
AxyI	CCTNAGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BbvI	GCAGC	2 cut(s)	17, 241
BccI	CCATC	1 cut(s)	511
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	6, 255
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	7, 256
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	245
Bsa29I	ATCGAT	2 cut(s)	119, 486
BsaJI	CCNNGG	2 cut(s)	30, 78
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	319
BseCI	ATCGAT	2 cut(s)	119, 486
BseDI	CCNNGG	2 cut(s)	30, 78
BseGI	GGATG	2 cut(s)	55, 88
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	36, 259, 422
BseXI	GCAGC	2 cut(s)	17, 241
BseYI	CCCAGC	1 cut(s)	240
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	2 cut(s)	119, 486
BslFI	GGGAC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	63
Bsp1720I	GCTNAGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	3 cut(s)	37, 258, 421
BspDI	ATCGAT	2 cut(s)	119, 486
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	30, 78
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	10, 310, 350, 563
BstDEI	CTNAG	5 cut(s)	45, 72, 245, 408, 550
BstF5I	GGATG	2 cut(s)	55, 88
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 314, 445
BstV1I	GCAGC	2 cut(s)	17, 241
Bsu15I	ATCGAT	2 cut(s)	119, 486
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	2 cut(s)	119, 486
BtsCI	GGATG	2 cut(s)	55, 88
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 356
Cac8I	GCNNGC	4 cut(s)	10, 310, 350, 563
Cfr13I	GGNCC	1 cut(s)	280
ClaI	ATCGAT	2 cut(s)	119, 486
CviJI	RGCY	8 cut(s)	77, 150, 173, 239, 244, 348, 439, 561
CviKI_1	RGCY	8 cut(s)	77, 150, 173, 239, 244, 348, 439, 561
DdeI	CTNAG	5 cut(s)	45, 72, 245, 408, 550
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	6, 255
FokI	GGATG	2 cut(s)	62, 95
Fsp4HI	GCNGC	2 cut(s)	6, 255
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	6, 255
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	346
HphI	GGTGA	2 cut(s)	190, 210
Hpy188I	TCNGA	3 cut(s)	82, 273, 516
HpyAV	CCTTC	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	290, 317, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 314, 445
HpyF3I	CTNAG	5 cut(s)	45, 72, 245, 408, 550
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	6 cut(s)	147, 219, 254, 300, 395, 547
Lsp1109I	GCAGC	2 cut(s)	17, 241
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	13, 412
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	3 cut(s)	145, 397, 548
MluCI	AATT	4 cut(s)	291, 373, 510, 602
MseI	TTAA	4 cut(s)	111, 341, 504, 570
MspA1I	CMGCKG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	263, 314, 445
NdeII	GATC	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	13, 412
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	7, 256
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	111, 341, 504, 570
SatI	GCNGC	2 cut(s)	6, 255
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	291, 373, 510, 602
SseBI	AGGCCT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	2 cut(s)	119, 486
TasI	AATT	4 cut(s)	291, 373, 510, 602
Tru1I	TTAA	4 cut(s)	111, 341, 504, 570
Tru9I	TTAA	4 cut(s)	111, 341, 504, 570
TscAI	CASTG	2 cut(s)	256, 363
TseFI	GTSAC	2 cut(s)	13, 412
TseI	GCWGC	2 cut(s)	5, 254
Tsp45I	GTSAC	2 cut(s)	13, 412
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	256, 363
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.