Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

38388760 .. 38440011

Gene Structure 51252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG342500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCTTCGCTACGAGGCTCGTCAACCATCTATTGGCAGCAGGCTCACATGGGAGGCTGCATTGAACGCTGCGTTTTGGGTTCGGGTTCATGCCTGGGAGAAGGTTTTGGAGAGCGACTTGGTGTTATTTAAAGGCACCAAGGTGAAACAGACTGAGGATGTTGCTTATAGGATCACTGCTAAGGCCTCGGATGTTGCGTATACTATGTATGTTGTTCTCAATGTCCTCCCTGCAATTCTATTTGTGAAAGCAAGCAATGCAGAGTTGTGGGAGAATATAGGTTTAAGAAGCTTGCTTACACTAACCTCTGCGACCAATTTGAAAAAGAACAAAATGAAGGCACTTATTCCTCAGGTCACACAGATTATATATTTTGGAGGGCTTTCTATGTTGTGTGTTGGTCCAATGATGTTGTGTAGTAGTTCAATCGATATCTTTGGCATAGTTTCAATCCAATTCAGGTATGACCAATATCCAGATTTTATGAAACCAGAACATGACCAATATGTTTATCGCCACCCCAATGGATTGTGTGTGATTGGTTTGGCTGCAACACATGTGGCTCTTAAGGAAGAAGGGGGTATCACAGCCATTGATTTCAATGTTGGAAAATTGGATCGCAGTGGGCTTAAGGTTACTGGAAAGCGCAAGAAGATTGTAGATCATGCAGATCTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

226

Amino Acids

25.26

Weight (kDa)

9.15

Isoelectric Point (pI)

20.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	179, 624
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflII	CTTAAG	2 cut(s)	566, 629
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	5 cut(s)	64, 322, 426, 450, 601
AjnI	CCWGG	1 cut(s)	92
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AlwI	GGATC	2 cut(s)	179, 624
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	4 cut(s)	36, 56, 68, 548
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
BbvI	GCAGC	4 cut(s)	43, 48, 55, 535
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	94
BfrI	CTTAAG	2 cut(s)	566, 629
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	4 cut(s)	37, 57, 69, 549
BlsI	GCNGC	4 cut(s)	38, 58, 70, 550
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	93, 138, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	643
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	94
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	93, 138, 186
BseGI	GGATG	2 cut(s)	163, 196
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	144, 365
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	4 cut(s)	43, 48, 55, 535
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	32
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	171, 616, 661, 670
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	145, 364
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	179, 624
BspT107I	GGYRCC	1 cut(s)	134
BspTI	CTTAAG	2 cut(s)	566, 629
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	3 cut(s)	93, 138, 186
BssMI	GATC	4 cut(s)	171, 616, 661, 670
BssNAI	GTATAC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	94
BstAFI	CTTAAG	2 cut(s)	566, 629
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	41, 253, 293
BstDEI	CTNAG	3 cut(s)	153, 180, 351
BstF5I	GGATG	2 cut(s)	163, 196
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	4 cut(s)	174, 619, 664, 673
BstMBI	GATC	4 cut(s)	171, 616, 661, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 257, 674
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	43, 48, 55, 535
BstX2I	RGATCY	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	670
BstZ17I	GTATAC	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	429
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	163, 196
BtsI	GCAGTG	2 cut(s)	174, 628
BtsIMutI	CAGTG	2 cut(s)	174, 628
Cac8I	GCNNGC	3 cut(s)	41, 253, 293
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	429
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	5 cut(s)	48, 89, 497, 557, 665
DdeI	CTNAG	3 cut(s)	153, 180, 351
DpnI	GATC	4 cut(s)	173, 618, 663, 672
DpnII	GATC	4 cut(s)	171, 616, 661, 670
DraI	TTTAAA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	51, 92, 500, 560, 668
FatI	CATG	5 cut(s)	47, 88, 496, 556, 664
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	4 cut(s)	37, 57, 69, 549
FokI	GGATG	2 cut(s)	170, 203
Fsp4HI	GCNGC	4 cut(s)	37, 57, 69, 549
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	4 cut(s)	37, 57, 69, 549
HaeIII	GGCC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	51, 92, 500, 560, 668
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	289
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	23, 201
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	2 cut(s)	23, 201
HpyAV	CCTTC	3 cut(s)	94, 331, 569
HpyCH4V	TGCA	5 cut(s)	59, 233, 260, 551, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 257, 674
HpyF3I	CTNAG	3 cut(s)	153, 180, 351
Hsp92II	CATG	5 cut(s)	51, 92, 500, 560, 668
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	171, 616, 661, 670
Lsp1109I	GCAGC	4 cut(s)	43, 48, 55, 535
MaeIII	GTNAC	2 cut(s)	355, 634
MalI	GATC	4 cut(s)	173, 618, 663, 672
MboI	GATC	4 cut(s)	171, 616, 661, 670
MboII	GAAGA	2 cut(s)	584, 664
MflI	RGATCY	1 cut(s)	670
MluCI	AATT	4 cut(s)	234, 316, 455, 611
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	8 cut(s)	7, 46, 148, 196, 236, 316, 360, 371
MseI	TTAA	4 cut(s)	129, 284, 567, 630
MslI	CAYNNNNRTG	2 cut(s)	140, 522
MspCI	CTTAAG	2 cut(s)	566, 629
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	65, 257, 674
NdeII	GATC	4 cut(s)	171, 616, 661, 670
NlaIII	CATG	5 cut(s)	51, 92, 500, 560, 668
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	185
PciI	ACATGT	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	38, 58, 70, 550
PscI	ACATGT	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	670
RseI	CAYNNNNRTG	2 cut(s)	140, 522
SaqAI	TTAA	4 cut(s)	129, 284, 567, 630
SatI	GCNGC	4 cut(s)	37, 57, 69, 549
Sau3AI	GATC	4 cut(s)	171, 616, 661, 670
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	8 cut(s)	105, 144, 283, 293, 308, 357, 464, 636
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	140, 522
SmlI	CTYRAG	2 cut(s)	566, 629
SmoI	CTYRAG	2 cut(s)	566, 629
Sse9I	AATT	4 cut(s)	234, 316, 455, 611
SseBI	AGGCCT	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	1 cut(s)	429
TasI	AATT	4 cut(s)	234, 316, 455, 611
Tru1I	TTAA	4 cut(s)	129, 284, 567, 630
Tru9I	TTAA	4 cut(s)	129, 284, 567, 630
TscAI	CASTG	2 cut(s)	181, 628
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	36, 56, 68, 548
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	77, 350, 500
TspRI	CASTG	2 cut(s)	181, 628
Van91I	CCANNNNNTGG	1 cut(s)	32
Vha464I	CTTAAG	2 cut(s)	566, 629
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.