Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004149.1

Orthogroup ID

OG0017020

Physical Location & Seq

Genomic Coordinates Forward (+)

8727 .. 9299

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004149.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgatgcccatggttggagttgccgttttggagagcgacttggtgttatttaaaggcaccaaggtgaaacagactgagtatgttgcttataggatcactgctaaggcctcggatgttgcgtatactgtgtatgctgttatcaatactgttatacccaatgctctgcagatatcggttatggtggtgaagatagtggtcatcatccctattttatctgggatttcagctgtggtgagcaagttttgttcgtgtaaagtccctggttatgtgcttggtttagggcgtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

96

Amino Acids

10.26

Weight (kDa)

9.43

Isoelectric Point (pI)

18.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017020)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003199 RLG00000008891 RLG00000028970 RLG00000029097
rosa_multiflora	Rmu_sc0001301.1_g000070 Rmu_sc0004149.1_g000003 Rmu_sc0004301.1_g000016 Rmu_sc0010930.1_g000008 Rmu_ssc0000213.1_g000118
rosa_roxburghii	Rroxscaffold_2G00110400 Rroxscaffold_6G00428450
rosa_samantha	Rh2CG221900 Rh3CG340300 Rh3DG342500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	76, 196, 244
BanI	GGYRCC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	9, 60, 108, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	9, 60, 108, 259
BseGI	GGATG	2 cut(s)	118, 201
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	9, 60, 108, 259
BssMI	GATC	1 cut(s)	93
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	9, 60
Bst1107I	GTATAC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	127, 148
BstDEI	CTNAG	2 cut(s)	75, 102
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	118, 201
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	118, 201
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	2 cut(s)	107, 227
CviKI_1	RGCY	2 cut(s)	107, 227
DdeI	CTNAG	2 cut(s)	75, 102
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DraI	TTTAAA	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	9, 60
Eco147I	AGGCCT	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	9, 60
ErhI	CCWWGG	2 cut(s)	9, 60
FaeI	CATG	1 cut(s)	13
FaiI	YATR	8 cut(s)	11, 81, 90, 123, 132, 152, 179, 267
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	122
FokI	GGATG	2 cut(s)	125, 188
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	76, 196, 244
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	127, 148
HpyCH4V	TGCA	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	75, 102
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	93
LpnPI	CCDG	3 cut(s)	201, 246, 273
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	199
MnlI	CCTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	2 cut(s)	66, 229
SfcI	CTRYAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	62
SseBI	AGGCCT	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	9, 60
TaaI	ACNGT	2 cut(s)	127, 148
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	103
TspRI	CASTG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.