Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012587

Physical Location & Seq

Genomic Coordinates Reverse (-)

5708513 .. 5712874

Gene Structure 4362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGCTGGGTTTCTGTTCTATCATGTCTCTACTAAGCGTCGGGACAAAGAGACATATAGAAAAGAGAAGCTCTCGATTAAGCGTGACCAACTTGAGATGCTTAAGGAGACCAAGAAATCCAATTTCCCGACGACAACCAAATTGTTGCACTCCCACTCCCACAGTGAAAGCAACACTGTTCCCCTCCACCCTTCCTGCCAATCCGACATCGACGAGATCGAAAACCTAATCAATGCCAGCGTTCAATCAAACCCCACCACCGTCCTCCCCGCCAAGCCTCCATCGCCGTCTCCTCCTCCCCCTTCATCCAATCCAACCGGCCCCTCCTGCCTCCTCCAAGCCCAAGCAGCCGCTATCTGTCCCCACCCTCCTCTAGTCCCCTCCGCCGGGATCAGTAACGGCCTCACCAACATCACCGCTTCCGGGTTCAGGTCCTCGCCTAACACCCTAATGGAGCCCGTTTCGGACACCGTCAAGAAGGACTTGTCTCGGATCGTCTTCCCGACCCCTATTGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGATATCTGGGTCCTTTCTTCTTCATTGTGTTCTTGGGTCTCACTCTGTCCTGGTCTGCATTTGTCAAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

208

Amino Acids

22.28

Weight (kDa)

8.77

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04230 FvH4_3g04240
rosa_chinensis	RchiOBHm_Chr1g0326901 RchiOBHm_Chr2g0167531 RchiOBHm_Chr5g0045341
rosa_laevigata	RLG00000031505 RLG00000034532
rosa_multiflora	Rmu_sc0000338.1_g000031 Rmu_sc0001972.1_g000008
rosa_roxburghii	Rroxscaffold_1G00069380
rosa_rugosa	Rorug04G0033000 Rorug04G0033100 Rorug04G0033200 Rorug04G0423300
rosa_samantha	Rh2AG204700 Rh5AG050700 Rh5BG049800 Rh5DG322400
rosa_wichuraiana	Rw5G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	273, 354, 387, 420
AclWI	GGATC	2 cut(s)	401, 503
AfiI	CCNNNNNNNGG	5 cut(s)	389, 390, 426, 432, 531
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	2 cut(s)	8, 73
AluI	AGCT	2 cut(s)	8, 73
Alw26I	GTCTC	6 cut(s)	34, 47, 104, 297, 495, 591
AlwI	GGATC	2 cut(s)	401, 503
AoxI	GGCC	2 cut(s)	322, 403
ApeKI	GCWGC	2 cut(s)	5, 350
AspS9I	GGNCC	4 cut(s)	323, 435, 522, 558
AsuC2I	CCSGG	3 cut(s)	391, 427, 527
AsuHPI	GGTGA	2 cut(s)	400, 409
AvaII	GGWCC	3 cut(s)	435, 522, 558
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	17, 362
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	2 cut(s)	274, 418
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	3 cut(s)	391, 427, 527
BcoDI	GTCTC	6 cut(s)	34, 47, 104, 297, 495, 591
BfaI	CTAG	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	3 cut(s)	6, 351, 354
BlsI	GCNGC	3 cut(s)	7, 352, 355
Bme1390I	CCNGG	4 cut(s)	391, 427, 527, 599
Bme18I	GGWCC	3 cut(s)	435, 522, 558
BmgT120I	GGNCC	4 cut(s)	323, 435, 522, 558
BmiI	GGNNCC	4 cut(s)	325, 459, 524, 559
BmrFI	CCNGG	4 cut(s)	391, 427, 527, 599
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	493
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	391, 427, 527
BsaI	GGTCTC	2 cut(s)	104, 591
BsaJI	CCNNGG	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	389, 390, 426, 432, 531
Bse118I	RCCGGY	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	5 cut(s)	389, 390, 426, 432, 531
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	4 cut(s)	285, 288, 326, 363
BseXI	GCAGC	2 cut(s)	17, 362
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	324, 405
BsiSI	CCGG	4 cut(s)	321, 390, 426, 527
BslFI	GGGAC	3 cut(s)	59, 348, 365
BslI	CCNNNNNNNGG	5 cut(s)	389, 390, 426, 432, 531
BsmAI	GTCTC	6 cut(s)	34, 47, 104, 297, 495, 591
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	3 cut(s)	59, 348, 365
BsnI	GGCC	2 cut(s)	324, 405
Bso31I	GGTCTC	2 cut(s)	104, 591
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	219, 393, 495
BspACI	CCGC	4 cut(s)	273, 354, 387, 420
BspANI	GGCC	2 cut(s)	324, 405
BspCNI	CTCAG	1 cut(s)	551
BspLI	GGNNCC	4 cut(s)	325, 459, 524, 559
BspPI	GGATC	2 cut(s)	401, 503
BspTI	CTTAAG	1 cut(s)	104
BspTNI	GGTCTC	2 cut(s)	104, 591
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	3 cut(s)	219, 393, 495
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	167, 181, 265, 475
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	36, 538
BstF5I	GGATG	1 cut(s)	308
BstKTI	GATC	3 cut(s)	222, 396, 498
BstMAI	GTCTC	6 cut(s)	34, 47, 104, 297, 495, 591
BstMBI	GATC	3 cut(s)	219, 393, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 330, 350
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	4 cut(s)	389, 425, 525, 597
BstV1I	GCAGC	2 cut(s)	17, 362
BstV2I	GAAGAC	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	324, 405
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	172, 177
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	4 cut(s)	323, 435, 522, 558
CseI	GACGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	9 cut(s)	8, 73, 280, 324, 344, 353, 405, 460, 535
CviKI_1	RGCY	9 cut(s)	8, 73, 280, 324, 344, 353, 405, 460, 535
DdeI	CTNAG	2 cut(s)	36, 538
DpnI	GATC	3 cut(s)	221, 395, 497
DpnII	GATC	3 cut(s)	219, 393, 495
EciI	GGCGGA	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	2 cut(s)	104, 591
Eco32I	GATATC	1 cut(s)	552
Eco47I	GGWCC	3 cut(s)	435, 522, 558
EcoO109I	RGGNCCY	3 cut(s)	435, 522, 558
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	1 cut(s)	29
FaiI	YATR	3 cut(s)	27, 58, 60
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	3 cut(s)	59, 348, 365
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	6, 351, 354
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	6, 351, 354
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	3 cut(s)	6, 351, 354
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	324, 405
HapII	CCGG	4 cut(s)	321, 390, 426, 527
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	29
HpaII	CCGG	4 cut(s)	321, 390, 426, 527
HphI	GGTGA	2 cut(s)	400, 409
Hpy188I	TCNGA	3 cut(s)	208, 469, 495
Hpy188III	TCNNGA	6 cut(s)	44, 76, 130, 478, 505, 614
Hpy99I	CGWCG	3 cut(s)	45, 136, 218
HpyAV	CCTTC	4 cut(s)	204, 315, 475, 611
HpyCH4III	ACNGT	4 cut(s)	167, 181, 265, 475
HpyCH4V	TGCA	2 cut(s)	151, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 330, 350
HpyF3I	CTNAG	2 cut(s)	36, 538
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	219, 393, 495
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	2 cut(s)	17, 362
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	86, 398
MalI	GATC	3 cut(s)	221, 395, 497
MboI	GATC	3 cut(s)	219, 393, 495
MboII	GAAGA	3 cut(s)	493, 557, 560
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	124, 143
MmeI	TCCRAC	2 cut(s)	231, 341
MseI	TTAA	2 cut(s)	81, 105
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	4 cut(s)	321, 390, 426, 527
MspR9I	CCNGG	4 cut(s)	391, 427, 527, 599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	3 cut(s)	286, 330, 350
NciI	CCSGG	3 cut(s)	391, 427, 527
NdeII	GATC	3 cut(s)	219, 393, 495
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	4 cut(s)	325, 459, 524, 559
NmuCI	GTSAC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	7, 352, 355
PpuMI	RGGWCCY	3 cut(s)	435, 522, 558
Psp5II	RGGWCCY	3 cut(s)	435, 522, 558
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	325, 459, 524, 559
PspPI	GGNCC	4 cut(s)	323, 435, 522, 558
PspPPI	RGGWCCY	3 cut(s)	435, 522, 558
PsyI	GACNNNGTC	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	81, 105
SatI	GCNGC	3 cut(s)	6, 351, 354
Sau3AI	GATC	3 cut(s)	219, 393, 495
Sau96I	GGNCC	4 cut(s)	323, 435, 522, 558
ScrFI	CCNGG	4 cut(s)	391, 427, 527, 599
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	5 cut(s)	10, 75, 231, 437, 622
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	3 cut(s)	435, 522, 558
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	95, 104
SmoI	CTYRAG	2 cut(s)	95, 104
Sse9I	AATT	2 cut(s)	124, 143
SsiI	CCGC	4 cut(s)	273, 354, 387, 420
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	389, 425, 525, 597
TaaI	ACNGT	4 cut(s)	167, 181, 265, 475
TaqI	TCGA	3 cut(s)	77, 213, 222
TasI	AATT	2 cut(s)	124, 143
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	81, 105
Tru9I	TTAA	2 cut(s)	81, 105
TscAI	CASTG	2 cut(s)	172, 184
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	5, 350
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	297, 560
TspRI	CASTG	2 cut(s)	172, 184
Tth111I	GACNNNGTC	1 cut(s)	473
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	3 cut(s)	435, 522, 558
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.