Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012587

Physical Location & Seq

Genomic Coordinates Forward (+)

44437460 .. 44442922

Gene Structure 5463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTGGTTTCGGTGGTTGCTACGGTGACTGATGGTGTGGATGAGAATGCAAAAGCGACACCGTTCCCTTCCTCCCAATCCGACATCAACGAGATCAAAAACCAAATCAATGCCAGCGTCCAATCGAGCCCCACCACCGTCCTCCCCACCAAGCCTCCCATCCCCACCGCGCCTTTATCCCCGTCTCCTCCTCCCCCTTCATCCAATCTAACCTCCCCAACCGGCCCCTCTCTCCTCTTCCAAGCCCAAGCATCCGCCGTCTGTCCCCGCCCCTCCTCCCGTCCCCTCCGCCACCAACAACAACGGCCCCATCAACATCGCCGCTTCTGGGTTCGGGTCCCGGCCCAACACCCTAACAGAGCCCGTTTAGGATACCGTCAAGAGGGACTTGTGTCGGATCGTCATCAATTTGAAGCTCGTCGTCTTCCCAACCCCTACTGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGGTCTCTGCAGTCCTTTCTTCTTCATTGTGTTCTTGGGTCCCACTTTGTCCTGGTCTGCATCTGTCAAGAAGTTTGAAGTTTTCACTGTTGCATATGCTGTACTTGCTGATGGTGCTGTCATTTTGACATTGAATGTACTCCTACTGGTTGAAATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

211

Amino Acids

23.04

Weight (kDa)

9.46

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04230 FvH4_3g04240
rosa_chinensis	RchiOBHm_Chr1g0326901 RchiOBHm_Chr2g0167531 RchiOBHm_Chr5g0045341
rosa_laevigata	RLG00000031505 RLG00000034532
rosa_multiflora	Rmu_sc0000338.1_g000031 Rmu_sc0001972.1_g000008
rosa_roxburghii	Rroxscaffold_1G00069380
rosa_rugosa	Rorug04G0033000 Rorug04G0033100 Rorug04G0033200 Rorug04G0423300
rosa_samantha	Rh2AG204700 Rh5AG050700 Rh5BG049800 Rh5DG322400
rosa_wichuraiana	Rw5G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	168, 255, 268, 289, 322
AclWI	GGATC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	573, 609
AfiI	CCNNNNNNNGG	3 cut(s)	328, 382, 454
AgsI	TTSAA	4 cut(s)	413, 548, 604, 623
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	2 cut(s)	189, 479
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	3 cut(s)	223, 305, 342
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	6 cut(s)	224, 306, 337, 343, 445, 509
AsuC2I	CCSGG	2 cut(s)	341, 450
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	3 cut(s)	337, 445, 509
BanII	GRGCYC	2 cut(s)	131, 364
BbsI	GAAGAC	1 cut(s)	416
BccI	CCATC	4 cut(s)	26, 167, 318, 575
BceAI	ACGGC	2 cut(s)	242, 320
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	2 cut(s)	341, 450
BcoDI	GTCTC	2 cut(s)	189, 479
BfmI	CTRYAG	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	3 cut(s)	341, 450, 523
Bme18I	GGWCC	3 cut(s)	337, 445, 509
BmgT120I	GGNCC	6 cut(s)	224, 306, 337, 343, 445, 509
BmiI	GGNNCC	7 cut(s)	226, 308, 338, 339, 447, 510, 511
BmrFI	CCNGG	3 cut(s)	341, 450, 523
BmsI	GCATC	2 cut(s)	260, 539
BoxI	GACNNNNGTC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	341, 450
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 382, 454
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	4 cut(s)	46, 159, 200, 251
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	3 cut(s)	328, 382, 454
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	4 cut(s)	177, 180, 224, 265
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	3 cut(s)	225, 307, 344
BsiSI	CCGG	3 cut(s)	222, 341, 450
BslFI	GGGAC	5 cut(s)	249, 267, 323, 399, 495
BslI	CCNNNNNNNGG	3 cut(s)	328, 382, 454
BsmAI	GTCTC	2 cut(s)	189, 479
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	5 cut(s)	249, 267, 323, 399, 495
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	225, 307, 344
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	131, 364
Bsp143I	GATC	2 cut(s)	93, 397
BspACI	CCGC	5 cut(s)	168, 255, 268, 289, 322
BspANI	GGCC	3 cut(s)	225, 307, 344
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	7 cut(s)	226, 308, 338, 339, 447, 510, 511
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	93, 397
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	6 cut(s)	25, 63, 139, 377, 440, 559
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	4 cut(s)	46, 159, 200, 251
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	96, 400
BstMAI	GTCTC	2 cut(s)	189, 479
BstMBI	GATC	2 cut(s)	93, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 584
BstNI	CCWGG	1 cut(s)	523
BstPAI	GACNNNNGTC	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	339, 448, 521
BstSFI	CTRYAG	1 cut(s)	478
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	225, 307, 344
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	4 cut(s)	46, 159, 200, 251
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	6 cut(s)	224, 306, 337, 343, 445, 509
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	572, 608
CviJI	RGCY	9 cut(s)	129, 154, 225, 245, 307, 344, 362, 416, 458
CviKI_1	RGCY	9 cut(s)	129, 154, 225, 245, 307, 344, 362, 416, 458
CviQI	GTAC	2 cut(s)	572, 608
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	2 cut(s)	95, 399
DpnII	GATC	2 cut(s)	93, 397
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	2 cut(s)	244, 278
Eco24I	GRGCYC	2 cut(s)	131, 364
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	3 cut(s)	337, 445, 509
EcoO109I	RGGNCCY	3 cut(s)	337, 445, 509
EcoRII	CCWGG	1 cut(s)	521
EcoT38I	GRGCYC	2 cut(s)	131, 364
Esp3I	CGTCTC	1 cut(s)	189
FaiI	YATR	2 cut(s)	565, 567
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	5 cut(s)	249, 267, 323, 399, 495
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	4 cut(s)	53, 146, 187, 238
FriOI	GRGCYC	2 cut(s)	131, 364
Fsp4HI	GCNGC	1 cut(s)	322
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	225, 307, 344
HapII	CCGG	3 cut(s)	222, 341, 450
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HpaII	CCGG	3 cut(s)	222, 341, 450
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	82, 397
Hpy188III	TCNNGA	2 cut(s)	380, 538
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	2 cut(s)	78, 207
HpyCH4III	ACNGT	6 cut(s)	25, 63, 139, 377, 440, 559
HpyCH4V	TGCA	4 cut(s)	50, 480, 530, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 584
HpyF3I	CTNAG	1 cut(s)	461
HspAI	GCGC	1 cut(s)	170
KflI	GGGWCCC	2 cut(s)	337, 509
Kzo9I	GATC	2 cut(s)	93, 397
LpnPI	CCDG	9 cut(s)	127, 235, 313, 354, 448, 463, 508, 535, 602
LweI	GCATC	2 cut(s)	260, 539
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	95, 399
MboI	GATC	2 cut(s)	93, 397
MboII	GAAGA	4 cut(s)	229, 416, 481, 484
MhlI	GDGCHC	2 cut(s)	131, 364
MluCI	AATT	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	105, 375
MspI	CCGG	3 cut(s)	222, 341, 450
MspR9I	CCNGG	3 cut(s)	341, 450, 523
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	575, 584
NciI	CCSGG	2 cut(s)	341, 450
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	2 cut(s)	93, 397
NlaIV	GGNNCC	7 cut(s)	226, 308, 338, 339, 447, 510, 511
NmuCI	GTSAC	1 cut(s)	25
PctI	GAATGC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	323
PpuMI	RGGWCCY	3 cut(s)	337, 445, 509
PshAI	GACNNNNGTC	1 cut(s)	391
Psp5II	RGGWCCY	3 cut(s)	337, 445, 509
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	7 cut(s)	226, 308, 338, 339, 447, 510, 511
PspPI	GGNCC	6 cut(s)	224, 306, 337, 343, 445, 509
PspPPI	RGGWCCY	3 cut(s)	337, 445, 509
PstI	CTGCAG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	573, 609
RsaNI	GTAC	2 cut(s)	572, 608
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	2 cut(s)	93, 397
Sau96I	GGNCC	6 cut(s)	224, 306, 337, 343, 445, 509
ScrFI	CCNGG	3 cut(s)	341, 450, 523
SduI	GDGCHC	2 cut(s)	131, 364
SetI	ASST	2 cut(s)	215, 418
SfaNI	GCATC	2 cut(s)	260, 539
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	3 cut(s)	337, 445, 509
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	5 cut(s)	168, 255, 268, 289, 322
StyD4I	CCNGG	3 cut(s)	339, 448, 521
TaaI	ACNGT	6 cut(s)	25, 63, 139, 377, 440, 559
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	407
TatI	WGTACW	2 cut(s)	571, 607
TauI	GCSGC	1 cut(s)	324
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	189, 484
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	3 cut(s)	337, 445, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.