Rorug04G0033100

Yip1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012587
Physical Location & Seq
Reverse (-)
4916296 .. 4918458
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0033100.1

Sequence Viewer

Length: 1476 bp
ATGTCTGCAAATTATAAGAGTGCTAAAGATCATACAGTTATCGATATTGGCAAGAAATGCAAGAAAAGCATCTTCAGAGTTCCTAACGTGCTCCGGAGACAAAACCCAGAAGCATATACACCTGAGGTTGTTTCAATGGGACCTTTTCATCATTACCGAGAAAAGCAAGGCAAGAGAGGCAACGAAGGCAAAGGCGAGGAAGATTTCCAACTGACGGAACGAGTGAAGAAGAGCTATTTGAATGAAATTCTCACAGGTATGAAGATTACTTTGGAAGAGTTGACCGCAAAAGTTACTGAGCTCTCAGATCAGAAAAATGAAGGTGGCTTTGAGGAACGAGCCCGCAATTTTTATGCAGAACCACTTGATCATATTTCTTCCAAAGACTTCATAGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTGATGATCCGAAACATAGGGCCTTTGATGACCCGGTGTTCAACATGGATTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAGAATCAACTACCTTGGTTTGTTATCCACAGTTTGTATGGCCTTACCCTTGATATATACTCTGGTGAAGCTTCCCGTGATGTGTACTCTGGTGAAGCTTCCCTCTCTATTATAATCCTGAAAGCGCTTAGCATACTACCATCACTGAAGCATAGTTGCTCAACCTATAAAACGCATCTCCATGAAAACGAGTGTCATTGTGATGCTGATGTTCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTAACTAACATAAAAGAGACAGGGCATAAAGCAGCTGGTAAAGAAGGTACATCCAACCCTCAAGAACATCAAGTGCACACTAGGAACAAAGACAAGAGAGACAATAAAGCTGTTCATGAAGACCCAGATCAACATCAAATTCGTACCGCAACCGCTCTCTCAAAGGCAAACATTAAATTCAAAAGCATCGAAAAGGATAGCATAATGGACATCCAATTCAAAGAGGGTGGGTGGTTCAGGAATGGGATTCTTGAGATTCCACAGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTTATTGCAATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATATCTTCAAAGGAAGATATGGAATTACTTTGCAAGGAAAAAGTAATTGGTAACTGGATGAGTGATGAAGACGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAATAAGTTCTACTATGTTGAGCTGTGCGAAAAAGTGAATGATCGTTACAGGTCGAGATGGCATACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAATCCCTGGAGAATTTTAGCTTTCGGGATAGGTATCTTCATTTTGATTCTCACTGCGTGCAGTCAGACACTCAACATTCGGGTTAACATGCATAAGTGA

Protein Analysis

491

Amino Acids

56.66

Weight (kDa)

6.52

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 24 - 476 9.3e-102 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 15, 644
AccBSI CCGCTC 1 cut(s) 941
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 5 cut(s) 285, 343, 933, 939, 1274
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 5 cut(s) 246, 924, 962, 1370, 1389
AcuI CTGAAG 3 cut(s) 58, 698, 1234
AdeI CACNNNGTG 1 cut(s) 1434
AfaI GTAC 3 cut(s) 617, 835, 931
AfeI AGCGCT 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 214, 1264
AgsI TTSAA 8 cut(s) 135, 241, 428, 484, 967, 1006, 1125, 1173
AjnI CCWGG 1 cut(s) 1382
AjuI GAANNNNNNNTTGG 4 cut(s) 254, 286, 1194, 1226
Alw21I GWGCWC 3 cut(s) 93, 303, 864
Alw26I GTCTC 3 cut(s) 91, 797, 879
Alw44I GTGCAC 1 cut(s) 860
AlwI GGATC 1 cut(s) 443
Aor13HI TCCGGA 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 657
AoxI GGCC 2 cut(s) 462, 571
ApaLI GTGCAC 1 cut(s) 860
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 5 cut(s) 246, 924, 962, 1370, 1389
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 140, 462
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 608, 635
AvaII GGWCC 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 864
BanII GRGCYC 2 cut(s) 303, 343
BbsI GAAGAC 2 cut(s) 912, 1239
Bbv12I GWGCWC 3 cut(s) 93, 303, 864
BbvI GCAGC 1 cut(s) 830
BccI CCATC 3 cut(s) 679, 1154, 1329
BciT130I CCWGG 1 cut(s) 1384
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 3 cut(s) 91, 797, 879
BfaI CTAG 2 cut(s) 530, 867
BfoI RGCGCY 1 cut(s) 659
BisI GCNGC 1 cut(s) 819
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 820
Bme1390I CCNGG 2 cut(s) 476, 1384
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 140, 462
BmiI GGNNCC 2 cut(s) 141, 1088
BmrFI CCNGG 2 cut(s) 476, 1384
BmsI GCATC 4 cut(s) 78, 715, 724, 981
BpiI GAAGAC 2 cut(s) 912, 1239
BpmI CTGGAG 1 cut(s) 1405
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 3 cut(s) 831, 1058, 1343
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 2 cut(s) 918, 1409
BsaJI CCNNGG 3 cut(s) 545, 1114, 1382
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 1264
Bse1I ACTGG 1 cut(s) 1223
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 1112
Bse8I GATNNNNATC 2 cut(s) 918, 1409
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 1384
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 545, 1114, 1382
BseGI GGATG 4 cut(s) 836, 996, 1227, 1269
BseJI GATNNNNATC 2 cut(s) 918, 1409
BseLI CCNNNNNNNGG 2 cut(s) 214, 1264
BseMI GCAATG 1 cut(s) 1112
BseMII CTCAG 3 cut(s) 114, 288, 318
BseNI ACTGG 1 cut(s) 1223
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 1 cut(s) 830
BsgI GTGCAG 2 cut(s) 731, 1456
BshFI GGCC 2 cut(s) 464, 573
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 3 cut(s) 93, 303, 864
BsiSI CCGG 2 cut(s) 94, 476
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 214, 1264
BsmAI GTCTC 3 cut(s) 91, 797, 879
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 464, 573
Bsp1286I GDGCHC 4 cut(s) 93, 303, 343, 864
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp19I CCATGG 1 cut(s) 1114
BspACI CCGC 5 cut(s) 285, 343, 933, 939, 1274
BspANI GGCC 2 cut(s) 464, 573
BspCNI CTCAG 3 cut(s) 115, 289, 317
BspDI ATCGAT 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 93
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 141, 1088
BspPI GGATC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 1112
BsrI ACTGG 1 cut(s) 1223
BssECI CCNNGG 3 cut(s) 545, 1114, 1382
BssMI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
BssT1I CCWWGG 2 cut(s) 545, 1114
Bst2UI CCWGG 1 cut(s) 1384
Bst4CI ACNGT 5 cut(s) 37, 413, 432, 563, 1238
Bst6I CTCTTC 2 cut(s) 224, 270
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 343, 1435
BstDEI CTNAG 4 cut(s) 123, 297, 304, 659
BstDSI CCRYGG 1 cut(s) 1114
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 4 cut(s) 836, 996, 1227, 1269
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 7 cut(s) 31, 310, 370, 451, 760, 916, 1321
BstMAI GTCTC 3 cut(s) 91, 797, 879
BstMBI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
BstMWI GCNNNNNNNGC 4 cut(s) 57, 66, 177, 186
BstNI CCWGG 1 cut(s) 1384
BstNSI RCATGY 1 cut(s) 1468
BstSCI CCNGG 2 cut(s) 474, 1382
BstSLI GKGCMC 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 830
BstV2I GAAGAC 2 cut(s) 912, 1239
BstXI CCANNNNNNTGG 1 cut(s) 1153
Bsu15I ATCGAT 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 2 cut(s) 464, 573
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 1114
BtsCI GGATG 4 cut(s) 836, 996, 1227, 1269
BtsI GCAGTG 1 cut(s) 1428
BtsIMutI CAGTG 2 cut(s) 674, 1428
Cac8I GCNNGC 2 cut(s) 343, 1435
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 2 cut(s) 140, 462
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 3 cut(s) 616, 834, 930
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviAII CATG 7 cut(s) 487, 515, 713, 902, 1115, 1344, 1465
CviQI GTAC 3 cut(s) 616, 834, 930
DdeI CTNAG 4 cut(s) 123, 297, 304, 659
DpnI GATC 7 cut(s) 30, 309, 369, 450, 759, 915, 1320
DpnII GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
DraIII CACNNNGTG 1 cut(s) 1434
Eam1104I CTCTTC 2 cut(s) 224, 270
EarI CTCTTC 2 cut(s) 224, 270
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 545, 1114
Eco24I GRGCYC 2 cut(s) 303, 343
Eco47I GGWCC 1 cut(s) 140
Eco47III AGCGCT 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 3 cut(s) 58, 698, 1234
Eco81I CCTNAGG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoO109I RGGNCCY 2 cut(s) 140, 462
EcoRII CCWGG 1 cut(s) 1382
EcoT14I CCWWGG 2 cut(s) 545, 1114
EcoT22I ATGCAT 1 cut(s) 1470
EcoT38I GRGCYC 2 cut(s) 303, 343
ErhI CCWWGG 2 cut(s) 545, 1114
FaeI CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
FaqI GGGAC 1 cut(s) 153
FatI CATG 7 cut(s) 486, 514, 712, 901, 1114, 1343, 1464
FauI CCCGC 2 cut(s) 350, 1281
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 819
FokI GGATG 4 cut(s) 823, 983, 1234, 1256
FriOI GRGCYC 2 cut(s) 303, 343
Fsp4HI GCNGC 1 cut(s) 819
FspBI CTAG 2 cut(s) 530, 867
GlaI GCGC 1 cut(s) 657
GluI GCNGC 1 cut(s) 819
GsuI CTGGAG 1 cut(s) 1405
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 464, 573
HapII CCGG 2 cut(s) 94, 476
HhaI GCGC 1 cut(s) 658
Hin1II CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 3 cut(s) 282, 409, 1462
HindII GTYRAC 3 cut(s) 282, 409, 1462
HindIII AAGCTT 2 cut(s) 600, 627
HinfI GANTC 4 cut(s) 535, 1033, 1042, 1423
HpaI GTTAAC 1 cut(s) 1462
HpaII CCGG 2 cut(s) 94, 476
HphI GGTGA 2 cut(s) 608, 635
Hpy166II GTNNAC 5 cut(s) 282, 409, 616, 862, 1462
Hpy188I TCNGA 7 cut(s) 77, 307, 312, 438, 453, 1072, 1443
Hpy8I GTNNAC 5 cut(s) 282, 409, 616, 862, 1462
HpyAV CCTTC 3 cut(s) 179, 314, 824
HpyCH4III ACNGT 5 cut(s) 37, 413, 432, 563, 1238
HpyCH4IV ACGT 2 cut(s) 87, 1056
HpyCH4V TGCA 9 cut(s) 8, 60, 356, 748, 862, 1097, 1197, 1437, 1468
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 66, 177, 186
HpyF3I CTNAG 4 cut(s) 123, 297, 304, 659
HpySE526I ACGT 2 cut(s) 87, 1056
Hsp92II CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
HspAI GCGC 1 cut(s) 656
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 1462
Kzo9I GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 2 cut(s) 96, 531
Lsp1109I GCAGC 1 cut(s) 830
LweI GCATC 4 cut(s) 78, 715, 724, 981
MaeI CTAG 2 cut(s) 530, 867
MaeII ACGT 2 cut(s) 87, 1056
MaeIII GTNAC 3 cut(s) 292, 1214, 1322
MalI GATC 7 cut(s) 30, 309, 369, 450, 759, 915, 1320
MbiI CCGCTC 1 cut(s) 941
MboI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
MfeI CAATTG 1 cut(s) 1098
MhlI GDGCHC 4 cut(s) 93, 303, 343, 864
MmeI TCCRAC 3 cut(s) 232, 864, 1039
MnlI CCTC 8 cut(s) 118, 170, 190, 325, 644, 855, 1003, 1172
Mph1103I ATGCAT 1 cut(s) 1470
MroI TCCGGA 1 cut(s) 93
MseI TTAA 3 cut(s) 788, 960, 1461
MslI CAYNNNNRTG 5 cut(s) 257, 395, 711, 732, 1151
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 94, 476
MspR9I CCNGG 2 cut(s) 476, 1384
MunI CAATTG 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 1384
MwoI GCNNNNNNNGC 4 cut(s) 57, 66, 177, 186
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 1 cut(s) 1114
NdeII GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
NlaIII CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
NlaIV GGNNCC 2 cut(s) 141, 1088
NsiI ATGCAT 1 cut(s) 1470
NspI RCATGY 1 cut(s) 1468
PagI TCATGA 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 4 cut(s) 535, 1033, 1042, 1423
PkrI GCNGC 1 cut(s) 820
PpuMI RGGWCCY 1 cut(s) 140
PsiI TTATAA 2 cut(s) 15, 644
Psp124BI GAGCTC 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 1382
PspGI CCWGG 1 cut(s) 1382
PspN4I GGNNCC 2 cut(s) 141, 1088
PspPI GGNCC 2 cut(s) 140, 462
PspPPI RGGWCCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 617, 835, 931
RsaNI GTAC 3 cut(s) 616, 834, 930
RseI CAYNNNNRTG 5 cut(s) 257, 395, 711, 732, 1151
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 788, 960, 1461
SatI GCNGC 1 cut(s) 819
Sau3AI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
Sau96I GGNCC 2 cut(s) 140, 462
ScrFI CCNGG 2 cut(s) 476, 1384
SduI GDGCHC 4 cut(s) 93, 303, 343, 864
SfaNI GCATC 4 cut(s) 78, 715, 724, 981
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 5 cut(s) 257, 395, 711, 732, 1151
SmlI CTYRAG 3 cut(s) 846, 1037, 1358
SmoI CTYRAG 3 cut(s) 846, 1037, 1358
SsiI CCGC 5 cut(s) 285, 343, 933, 939, 1274
SspMI CTAG 2 cut(s) 530, 867
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 474, 1382
StyI CCWWGG 2 cut(s) 545, 1114
TaaI ACNGT 5 cut(s) 37, 413, 432, 563, 1238
TaiI ACGT 2 cut(s) 90, 1059
TaqI TCGA 3 cut(s) 42, 975, 1331
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 4 cut(s) 535, 1033, 1042, 1423
Tru1I TTAA 3 cut(s) 788, 960, 1461
Tru9I TTAA 3 cut(s) 788, 960, 1461
TscAI CASTG 2 cut(s) 681, 1435
TseI GCWGC 1 cut(s) 818
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 681, 1435
VneI GTGCAC 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 140
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 5 cut(s) 246, 924, 962, 1370, 1389
XceI RCATGY 1 cut(s) 1468
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XspI CTAG 2 cut(s) 530, 867
Zsp2I ATGCAT 1 cut(s) 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.