Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012587

Physical Location & Seq

Genomic Coordinates Reverse (-)

20675108 .. 20680461

Gene Structure 5354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCACACTCCCACTCCCACAGCGAAAGTGACACTGTTCCCCTCCACCCTTCCTCCCAATCCGACATCAACGAGATCAAAAACCAAATCAATGCCAGCGTCCAATCGAGCCCCGCCACCGTCCTCCCCGCCAAGCCTCCCAGCCCCACCGCGCCTCCATCCCCGTCTCTTCCTCCCCCTTCATCCAATCTAACCTCCCCAACCGGCCCCTCCCTCCTCTTCCAAGCCCAAGCAGCCGCCGTCTGTCCCCGCCCCTCCTCGCGTCCCCTCCGCCGCCAACAACAACGGCCCCATCAACATCGCCGCTTCTGGGTTCGGGTCCCCGCCCAACAACCTAACGGAGCCCGTTTGGGATACCGTCAAGAGGGACTTGTGTCGGATTGTCATCAATTTGAAGCTCGTTGTCTTCCCAACCCCTATTGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGGTCTCTGCGGTCCTTTCTTCTTCAATGTGTTCTTGGGTCCCACTTTGTCCTGGTCTGCATCTGTCAAGAAGAAATCATGTCGGTGCCGACTAATTTCCTGGGAGGCGGCAAAGGTGGAGGAAGAGACGTCGGCACAGAGAAGAGGGAAGGATGGACTGGAGGGAGGCGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

209

Amino Acids

22.82

Weight (kDa)

9.39

Isoelectric Point (pI)

73.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04230 FvH4_3g04240
rosa_chinensis	RchiOBHm_Chr1g0326901 RchiOBHm_Chr2g0167531 RchiOBHm_Chr5g0045341
rosa_laevigata	RLG00000031505 RLG00000034532
rosa_multiflora	Rmu_sc0000338.1_g000031 Rmu_sc0001972.1_g000008
rosa_roxburghii	Rroxscaffold_1G00069380
rosa_rugosa	Rorug04G0033000 Rorug04G0033100 Rorug04G0033200 Rorug04G0423300
rosa_samantha	Rh2AG204700 Rh5AG050700 Rh5BG049800 Rh5DG322400
rosa_wichuraiana	Rw5G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	537
AccII	CGCG	2 cut(s)	152, 262
AcyI	GRCGYC	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	310, 364, 436
AgsI	TTSAA	2 cut(s)	395, 478
AjnI	CCWGG	2 cut(s)	503, 551
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw26I	GTCTC	3 cut(s)	171, 461, 572
AoxI	GGCC	2 cut(s)	205, 287
ApeKI	GCWGC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	6 cut(s)	206, 288, 319, 427, 464, 491
AsuC2I	CCSGG	1 cut(s)	432
AvaII	GGWCC	4 cut(s)	319, 427, 464, 491
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	2 cut(s)	113, 346
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	3 cut(s)	166, 300, 599
BceAI	ACGGC	2 cut(s)	224, 302
BciT130I	CCWGG	2 cut(s)	505, 553
BciVI	GTATCC	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	3 cut(s)	171, 461, 572
BfuI	GTATCC	1 cut(s)	347
BisI	GCNGC	5 cut(s)	234, 237, 274, 304, 561
BlsI	GCNGC	5 cut(s)	235, 238, 275, 305, 562
Bme1390I	CCNGG	3 cut(s)	432, 505, 553
Bme18I	GGWCC	4 cut(s)	319, 427, 464, 491
BmgT120I	GGNCC	6 cut(s)	206, 288, 319, 427, 464, 491
BmiI	GGNNCC	9 cut(s)	208, 290, 320, 321, 343, 429, 492, 493, 539
BmrFI	CCNGG	3 cut(s)	432, 505, 553
BmsI	GCATC	1 cut(s)	521
BoxI	GACNNNNGTC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	430, 552
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 38, 68, 139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 364, 436
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	505, 553
BseDI	CCNNGG	2 cut(s)	430, 552
BseGI	GGATG	3 cut(s)	158, 182, 610
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	310, 364, 436
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	2 cut(s)	206, 247
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	152, 262
BshFI	GGCC	2 cut(s)	207, 289
BshNI	GGYRCC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	204, 432
BslFI	GGGAC	5 cut(s)	231, 249, 305, 381, 477
BslI	CCNNNNNNNGG	3 cut(s)	310, 364, 436
BsmAI	GTCTC	3 cut(s)	171, 461, 572
BsmBI	CGTCTC	2 cut(s)	171, 572
BsmFI	GGGAC	5 cut(s)	231, 249, 305, 381, 477
BsnI	GGCC	2 cut(s)	207, 289
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	113, 346
Bsp143I	GATC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	207, 289
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	2 cut(s)	152, 262
BspLI	GGNNCC	9 cut(s)	208, 290, 320, 321, 343, 429, 492, 493, 539
BspT107I	GGYRCC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	430, 552
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	581
Bst2UI	CCWGG	2 cut(s)	505, 553
Bst4CI	ACNGT	3 cut(s)	37, 121, 359
Bst6I	CTCTTC	4 cut(s)	174, 224, 570, 589
BstACI	GRCGYC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	158, 182, 610
BstFNI	CGCG	2 cut(s)	152, 262
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	3 cut(s)	171, 461, 572
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	505, 553
BstPAI	GACNNNNGTC	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	430, 503, 551
BstUI	CGCG	2 cut(s)	152, 262
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	207, 289
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	158, 182, 610
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	6 cut(s)	206, 288, 319, 427, 464, 491
CseI	GACGC	2 cut(s)	88, 251
CviAII	CATG	1 cut(s)	531
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	4 cut(s)	174, 224, 570, 589
EarI	CTCTTC	4 cut(s)	174, 224, 570, 589
EciI	GGCGGA	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	113, 346
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	4 cut(s)	319, 427, 464, 491
EcoO109I	RGGNCCY	3 cut(s)	319, 427, 491
EcoRII	CCWGG	2 cut(s)	503, 551
EcoT38I	GRGCYC	2 cut(s)	113, 346
Esp3I	CGTCTC	2 cut(s)	171, 572
FaeI	CATG	1 cut(s)	534
FaiI	YATR	1 cut(s)	532
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	5 cut(s)	231, 249, 305, 381, 477
FatI	CATG	1 cut(s)	530
FauI	CCCGC	4 cut(s)	121, 136, 257, 331
Fnu4HI	GCNGC	5 cut(s)	234, 237, 274, 304, 561
FokI	GGATG	3 cut(s)	145, 169, 617
FriOI	GRGCYC	2 cut(s)	113, 346
Fsp4HI	GCNGC	5 cut(s)	234, 237, 274, 304, 561
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	234, 237, 274, 304, 561
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	207, 289
HapII	CCGG	2 cut(s)	204, 432
HgaI	GACGC	2 cut(s)	88, 251
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HpaII	CCGG	2 cut(s)	204, 432
Hpy188I	TCNGA	2 cut(s)	64, 379
Hpy188III	TCNNGA	2 cut(s)	362, 520
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	3 cut(s)	60, 189, 595
HpyCH4III	ACNGT	3 cut(s)	37, 121, 359
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	1 cut(s)	581
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	1 cut(s)	152
KflI	GGGWCCC	2 cut(s)	319, 491
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	521
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	3, 29
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	8 cut(s)	161, 211, 398, 463, 466, 535, 587, 606
MhlI	GDGCHC	2 cut(s)	113, 346
MluCI	AATT	2 cut(s)	389, 546
MmeI	TCCRAC	2 cut(s)	87, 357
MslI	CAYNNNNRTG	1 cut(s)	535
MspI	CCGG	2 cut(s)	204, 432
MspR9I	CCNGG	3 cut(s)	432, 505, 553
MvaI	CCWGG	2 cut(s)	505, 553
MvnI	CGCG	2 cut(s)	152, 262
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	9 cut(s)	208, 290, 320, 321, 343, 429, 492, 493, 539
NmuCI	GTSAC	2 cut(s)	3, 29
PkrI	GCNGC	5 cut(s)	235, 238, 275, 305, 562
PpuMI	RGGWCCY	3 cut(s)	319, 427, 491
PshAI	GACNNNNGTC	1 cut(s)	373
Psp5II	RGGWCCY	3 cut(s)	319, 427, 491
Psp6I	CCWGG	2 cut(s)	503, 551
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	503, 551
PspN4I	GGNNCC	9 cut(s)	208, 290, 320, 321, 343, 429, 492, 493, 539
PspPI	GGNCC	6 cut(s)	206, 288, 319, 427, 464, 491
PspPPI	RGGWCCY	3 cut(s)	319, 427, 491
RseI	CAYNNNNRTG	1 cut(s)	535
SatI	GCNGC	5 cut(s)	234, 237, 274, 304, 561
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	6 cut(s)	206, 288, 319, 427, 464, 491
ScrFI	CCNGG	3 cut(s)	432, 505, 553
SduI	GDGCHC	2 cut(s)	113, 346
SetI	ASST	5 cut(s)	197, 337, 400, 570, 584
SfaNI	GCATC	1 cut(s)	521
SinI	GGWCC	4 cut(s)	319, 427, 464, 491
SmiMI	CAYNNNNRTG	1 cut(s)	535
Sse9I	AATT	2 cut(s)	389, 546
StyD4I	CCNGG	3 cut(s)	430, 503, 551
TaaI	ACNGT	3 cut(s)	37, 121, 359
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	389, 546
TauI	GCSGC	4 cut(s)	239, 276, 306, 563
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	2 cut(s)	3, 29
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	2 cut(s)	3, 29
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	4 cut(s)	319, 427, 464, 491
ZraI	GACGTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.