Rmu_sc0001972.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001972.1
OG0012587
Physical Location & Seq
Reverse (-)
42781 .. 50492
7712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001972.1_g000008.1.cds

Sequence Viewer

Length: 552 bp
atggatgatgctggctcaaaaaatttgattctgccaatcactgtggctgtaatggcagctgggtcagctgggtttctgttctatcatgtctctgctaagcggcgggacaaagagacatatagaaaagagaagctctcgattaagcgtgaccaacttgagatgcttaaggagactaagaaagaagctgttggagttgctcttatacgagccgaggttacgcggtttaatgaattcgaacgactaattggaatagaaacgagtggagtccctgataatgaaaattaccttaaagccaaaatcatcaccagacttcaagaatatttgatacggccctctcctttccttcaacccgacccccaatcccttctcttcctccagtcctcttcttccttctcaaagcctaaggaaaatccccaattgctatccaaacccaatccgaaccagaaaggaagaaagaaggccaagatcgaacactctagctccggcgcagatcaggcatcgacggcgaagaaactttgcgcagtggccggagtcaaggagcgaacggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.36

Weight (kDa)

9.76

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 520
AccII CGCG 1 cut(s) 220
AciI CCGC 3 cut(s) 100, 103, 220
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 2 cut(s) 22, 230
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 314, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 5 cut(s) 59, 68, 133, 185, 480
AluI AGCT 5 cut(s) 59, 68, 133, 185, 480
Alw26I GTCTC 3 cut(s) 94, 107, 164
AoxI GGCC 4 cut(s) 329, 459, 525, 546
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 22, 230
AspLEI GCGC 2 cut(s) 488, 521
AspS9I GGNCC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 234
AxyI CCTNAGG 1 cut(s) 402
BbvI GCAGC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 344, 519
BcoDI GTCTC 3 cut(s) 94, 107, 164
BfaI CTAG 1 cut(s) 477
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 57, 101
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 58, 102
BmgT120I GGNCC 1 cut(s) 330
BmsI GCATC 2 cut(s) 150, 506
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bse1I ACTGG 1 cut(s) 376
Bse21I CCTNAGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 2 cut(s) 59, 68
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 4 cut(s) 331, 461, 527, 548
BsiSI CCGG 2 cut(s) 483, 528
BslFI GGGAC 2 cut(s) 119, 251
BsmAI GTCTC 3 cut(s) 94, 107, 164
BsmFI GGGAC 2 cut(s) 119, 251
BsnI GGCC 4 cut(s) 331, 461, 527, 548
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 465, 490
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 3 cut(s) 100, 103, 220
BspANI GGCC 4 cut(s) 331, 461, 527, 548
BspFNI CGCG 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 465, 490
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 374, 388
BstAFI CTTAAG 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 96, 174, 402
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 220
BstHHI GCGC 2 cut(s) 488, 521
BstKTI GATC 2 cut(s) 468, 493
BstMAI GTCTC 3 cut(s) 94, 107, 164
BstMBI GATC 2 cut(s) 465, 490
BstMWI GCNNNNNNNGC 4 cut(s) 53, 65, 494, 503
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 4 cut(s) 331, 461, 527, 548
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 39, 528
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 2 cut(s) 488, 521
Cfr13I GGNCC 1 cut(s) 330
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 1 cut(s) 86
DdeI CTNAG 3 cut(s) 96, 174, 402
DpnI GATC 2 cut(s) 467, 492
DpnII GATC 2 cut(s) 465, 490
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 374, 388
EarI CTCTTC 2 cut(s) 374, 388
Eco81I CCTNAGG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 230
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 87, 118, 120, 203
FaqI GGGAC 2 cut(s) 119, 251
FatI CATG 1 cut(s) 85
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 57, 101
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 57, 101
FspBI CTAG 1 cut(s) 477
FspI TGCGCA 1 cut(s) 520
GlaI GCGC 2 cut(s) 487, 520
GluI GCNGC 2 cut(s) 57, 101
GsaI CCCAGC 2 cut(s) 63, 72
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 4 cut(s) 331, 461, 527, 548
HapII CCGG 2 cut(s) 483, 528
HhaI GCGC 2 cut(s) 488, 521
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 2 cut(s) 486, 519
HinP1I GCGC 2 cut(s) 486, 519
HinfI GANTC 3 cut(s) 28, 264, 531
HpaII CCGG 2 cut(s) 483, 528
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 2 cut(s) 136, 314
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 4 cut(s) 353, 374, 400, 451
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 65, 494, 503
HpyF3I CTNAG 3 cut(s) 96, 174, 402
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 2 cut(s) 486, 519
Kzo9I GATC 2 cut(s) 465, 490
LmnI GCTCC 2 cut(s) 485, 538
LpnPI CCDG 9 cut(s) 45, 54, 282, 319, 389, 455, 479, 496, 541
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 150, 506
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 146, 214
MalI GATC 2 cut(s) 467, 492
MboI GATC 2 cut(s) 465, 490
MboII GAAGA 5 cut(s) 361, 375, 378, 462, 520
MfeI CAATTG 1 cut(s) 416
MluCI AATT 5 cut(s) 22, 230, 243, 280, 416
MlyI GAGTC 2 cut(s) 273, 540
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 4 cut(s) 205, 343, 383, 391
MseI TTAA 4 cut(s) 141, 165, 225, 288
MspA1I CMGCKG 2 cut(s) 59, 68
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 2 cut(s) 483, 528
MunI CAATTG 1 cut(s) 416
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 4 cut(s) 53, 65, 494, 503
NdeII GATC 2 cut(s) 465, 490
NlaIII CATG 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 146
NsbI TGCGCA 1 cut(s) 520
NspV TTCGAA 1 cut(s) 234
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 58, 102
PleI GAGTC 2 cut(s) 272, 539
PpsI GAGTC 2 cut(s) 272, 539
PspFI CCCAGC 2 cut(s) 59, 68
PspPI GGNCC 1 cut(s) 330
PvuII CAGCTG 2 cut(s) 59, 68
SaqAI TTAA 4 cut(s) 141, 165, 225, 288
SatI GCNGC 2 cut(s) 57, 101
Sau3AI GATC 2 cut(s) 465, 490
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 2 cut(s) 273, 540
SetI ASST 7 cut(s) 61, 70, 135, 187, 216, 288, 482
SfaNI GCATC 2 cut(s) 150, 506
SfuI TTCGAA 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 155, 164
SmoI CTYRAG 2 cut(s) 155, 164
Sse9I AATT 5 cut(s) 22, 230, 243, 280, 416
SsiI CCGC 3 cut(s) 100, 103, 220
SspI AATATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 477
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 4 cut(s) 137, 234, 468, 500
TasI AATT 5 cut(s) 22, 230, 243, 280, 416
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 4 cut(s) 141, 165, 225, 288
Tru9I TTAA 4 cut(s) 141, 165, 225, 288
TscAI CASTG 2 cut(s) 46, 528
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 243, 291
TspRI CASTG 2 cut(s) 46, 528
Vha464I CTTAAG 1 cut(s) 164
XapI RAATTY 2 cut(s) 22, 230
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.