Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012587

Physical Location & Seq

Genomic Coordinates Reverse (-)

41922553 .. 41926287

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTCTCATTTATATACTCTCAGCACATGGGTTTAGATCTAACCCCCTTTGGTGCACTTTCCTCTCTTCCCCTCCGATCCAATTTCTTGACGACAACCAAAATGTCACACTCCCACTCCCACAGCGAAAGCGACACCGTTCCCCTCCACCCTTCCTCCCAATCCGACATCAACGAGATCAAAAACCAAATCAATGCCAGCGTCCAATCGAGCCCCACCACCGTCCTCCCCGCCAAGCCTCCCAGCCCCAACGCGCCTCCATCCCCGTCTCCTCTTTCCCCTTCATCTAATCTAACCTCCCCAACCGGCCCCTCCCTCCTCTTCCAAGCCCAAGCAGCCGCCGTCTGTCCCCGCCCCTCCGCCACCAACAACAACGGCCCCATCAACATAGCCGCTTCTGGGTTCGGGTCCCTGCCCAACACCCTAACTGAGCCCGTTTGGGATACCTTCAAGAGGGACTTGTGTCGGATCATCATCAATTTGAAGCTCGTCGTCTTCCCAACCCCTACTGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGGTCTCTGCGGTCCTTTCTTCTTCATTGTGTTCTTGGGTCCCACTCTGTCCTGGTCTGCATCTGTCAAGAAGTGTTCAAGAAATTAGCATGTTATCAACCAGTATGCTAAAGTTCATGTGGACAATCAAAAGAATGGCCAAGAACATTGCTGCTGGGTTAATTCTAGCAAGTTTGTATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

241

Amino Acids

25.7

Weight (kDa)

9.42

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04230 FvH4_3g04240
rosa_chinensis	RchiOBHm_Chr1g0326901 RchiOBHm_Chr2g0167531 RchiOBHm_Chr5g0045341
rosa_laevigata	RLG00000031505 RLG00000034532
rosa_multiflora	Rmu_sc0000338.1_g000031 Rmu_sc0001972.1_g000008
rosa_roxburghii	Rroxscaffold_1G00069380
rosa_rugosa	Rorug04G0033000 Rorug04G0033100 Rorug04G0033200 Rorug04G0423300
rosa_samantha	Rh2AG204700 Rh5AG050700 Rh5BG049800 Rh5DG322400
rosa_wichuraiana	Rw5G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	254
AciI	CCGC	6 cut(s)	231, 339, 352, 360, 393, 551
AclWI	GGATC	2 cut(s)	72, 476
AcoI	YGGCCR	1 cut(s)	678
AfiI	CCNNNNNNNGG	3 cut(s)	399, 453, 525
AgsI	TTSAA	3 cut(s)	451, 484, 620
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	3 cut(s)	10, 273, 550
Alw44I	GTGCAC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	72, 476
AoxI	GGCC	3 cut(s)	307, 376, 678
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	335, 692
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	6 cut(s)	308, 377, 408, 516, 553, 580
AsuC2I	CCSGG	1 cut(s)	521
AvaII	GGWCC	4 cut(s)	408, 516, 553, 580
BaeGI	GKGCMC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	680
BanII	GRGCYC	2 cut(s)	215, 435
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	347, 679
BccI	CCATC	2 cut(s)	268, 389
BceAI	ACGGC	2 cut(s)	326, 391
BciT130I	CCWGG	1 cut(s)	594
BciVI	GTATCC	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	3 cut(s)	10, 273, 550
BfaI	CTAG	1 cut(s)	707
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	4 cut(s)	336, 339, 393, 693
BlsI	GCNGC	4 cut(s)	337, 340, 394, 694
Bme1390I	CCNGG	2 cut(s)	521, 594
Bme18I	GGWCC	4 cut(s)	408, 516, 553, 580
BmgT120I	GGNCC	6 cut(s)	308, 377, 408, 516, 553, 580
BmiI	GGNNCC	7 cut(s)	310, 379, 409, 410, 518, 581, 582
BmrFI	CCNGG	2 cut(s)	521, 594
BmsI	GCATC	1 cut(s)	610
BoxI	GACNNNNGTC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	473
BsaI	GGTCTC	2 cut(s)	10, 550
BsaJI	CCNNGG	1 cut(s)	519
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 453, 525
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	3 cut(s)	399, 453, 525
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	35, 420, 546
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	2 cut(s)	261, 308
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	347, 679
BseYI	CCCAGC	2 cut(s)	242, 695
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	309, 378, 680
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	306, 521
BslFI	GGGAC	4 cut(s)	333, 394, 470, 566
BslI	CCNNNNNNNGG	3 cut(s)	399, 453, 525
BsmAI	GTCTC	3 cut(s)	10, 273, 550
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	4 cut(s)	333, 394, 470, 566
BsnI	GGCC	3 cut(s)	309, 378, 680
Bso31I	GGTCTC	2 cut(s)	10, 550
Bsp1286I	GDGCHC	3 cut(s)	58, 215, 435
Bsp143I	GATC	4 cut(s)	37, 77, 177, 468
BspACI	CCGC	6 cut(s)	231, 339, 352, 360, 393, 551
BspANI	GGCC	3 cut(s)	309, 378, 680
BspCNI	CTCAG	3 cut(s)	34, 421, 545
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	7 cut(s)	310, 379, 409, 410, 518, 581, 582
BspPI	GGATC	2 cut(s)	72, 476
BspTNI	GGTCTC	2 cut(s)	10, 550
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	642
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	4 cut(s)	37, 77, 177, 468
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	3 cut(s)	139, 223, 511
Bst6I	CTCTTC	2 cut(s)	72, 326
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	3 cut(s)	21, 429, 532
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	4 cut(s)	40, 80, 180, 471
BstMAI	GTCTC	3 cut(s)	10, 273, 550
BstMBI	GATC	4 cut(s)	37, 77, 177, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	634
BstPAI	GACNNNNGTC	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	519, 592
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	347, 679
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	309, 378, 680
BtsCI	GGATG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	308, 377, 408, 516, 553, 580
CseI	GACGC	1 cut(s)	190
CviAII	CATG	3 cut(s)	28, 631, 658
DdeI	CTNAG	3 cut(s)	21, 429, 532
DpnI	GATC	4 cut(s)	39, 79, 179, 470
DpnII	GATC	4 cut(s)	37, 77, 177, 468
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	2 cut(s)	72, 326
EarI	CTCTTC	2 cut(s)	72, 326
EciI	GGCGGA	1 cut(s)	349
Eco24I	GRGCYC	2 cut(s)	215, 435
Eco31I	GGTCTC	2 cut(s)	10, 550
Eco47I	GGWCC	4 cut(s)	408, 516, 553, 580
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoO109I	RGGNCCY	3 cut(s)	408, 516, 580
EcoRII	CCWGG	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	215, 435
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	3 cut(s)	31, 634, 661
FaiI	YATR	7 cut(s)	14, 16, 29, 389, 632, 647, 659
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	4 cut(s)	333, 394, 470, 566
FatI	CATG	3 cut(s)	27, 630, 657
FauI	CCCGC	2 cut(s)	238, 359
Fnu4HI	GCNGC	4 cut(s)	336, 339, 393, 693
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	2 cut(s)	215, 435
Fsp4HI	GCNGC	4 cut(s)	336, 339, 393, 693
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	4 cut(s)	336, 339, 393, 693
GsaI	CCCAGC	2 cut(s)	246, 699
HaeIII	GGCC	3 cut(s)	309, 378, 680
HapII	CCGG	2 cut(s)	306, 521
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	3 cut(s)	31, 634, 661
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	306, 521
Hpy166II	GTNNAC	2 cut(s)	56, 663
Hpy188I	TCNGA	3 cut(s)	77, 166, 468
Hpy188III	TCNNGA	4 cut(s)	88, 451, 609, 620
Hpy8I	GTNNAC	2 cut(s)	56, 663
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	3 cut(s)	162, 291, 457
HpyCH4III	ACNGT	3 cut(s)	139, 223, 511
HpyCH4V	TGCA	2 cut(s)	56, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	21, 429, 532
Hsp92II	CATG	3 cut(s)	31, 634, 661
HspAI	GCGC	1 cut(s)	254
KflI	GGGWCCC	2 cut(s)	408, 580
Kzo9I	GATC	4 cut(s)	37, 77, 177, 468
Lsp1109I	GCAGC	2 cut(s)	347, 679
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	4 cut(s)	39, 79, 179, 470
MboI	GATC	4 cut(s)	37, 77, 177, 468
MboII	GAAGA	5 cut(s)	59, 313, 487, 552, 555
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	3 cut(s)	58, 215, 435
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	4 cut(s)	82, 478, 624, 702
MluNI	TGGCCA	1 cut(s)	680
MmeI	TCCRAC	2 cut(s)	189, 446
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	2 cut(s)	701, 724
Msp20I	TGGCCA	1 cut(s)	680
MspI	CCGG	2 cut(s)	306, 521
MspR9I	CCNGG	2 cut(s)	521, 594
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	521
NdeII	GATC	4 cut(s)	37, 77, 177, 468
NlaIII	CATG	3 cut(s)	31, 634, 661
NlaIV	GGNNCC	7 cut(s)	310, 379, 409, 410, 518, 581, 582
NmuCI	GTSAC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	634
PkrI	GCNGC	4 cut(s)	337, 340, 394, 694
PpuMI	RGGWCCY	3 cut(s)	408, 516, 580
PshAI	GACNNNNGTC	1 cut(s)	462
Psp5II	RGGWCCY	3 cut(s)	408, 516, 580
Psp6I	CCWGG	1 cut(s)	592
PspFI	CCCAGC	2 cut(s)	242, 695
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	7 cut(s)	310, 379, 409, 410, 518, 581, 582
PspPI	GGNCC	6 cut(s)	308, 377, 408, 516, 553, 580
PspPPI	RGGWCCY	3 cut(s)	408, 516, 580
PsuI	RGATCY	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	701, 724
SatI	GCNGC	4 cut(s)	336, 339, 393, 693
Sau3AI	GATC	4 cut(s)	37, 77, 177, 468
Sau96I	GGNCC	6 cut(s)	308, 377, 408, 516, 553, 580
ScrFI	CCNGG	2 cut(s)	521, 594
SduI	GDGCHC	3 cut(s)	58, 215, 435
SetI	ASST	3 cut(s)	299, 449, 489
SfaNI	GCATC	1 cut(s)	610
SinI	GGWCC	4 cut(s)	408, 516, 553, 580
Sse9I	AATT	4 cut(s)	82, 478, 624, 702
SsiI	CCGC	6 cut(s)	231, 339, 352, 360, 393, 551
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	519, 592
TaaI	ACNGT	3 cut(s)	139, 223, 511
TaqI	TCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	82, 478, 624, 702
TauI	GCSGC	2 cut(s)	341, 395
Tru1I	TTAA	2 cut(s)	701, 724
Tru9I	TTAA	2 cut(s)	701, 724
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	2 cut(s)	335, 692
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	273, 555, 646
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	4 cut(s)	408, 516, 553, 580
XagI	CCTNNNNNAGG	1 cut(s)	451
XceI	RCATGY	1 cut(s)	634
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.