Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000338.1

Orthogroup ID

OG0012587

Physical Location & Seq

Genomic Coordinates Reverse (-)

109279 .. 110025

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000338.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgataaacagaagcgcggggtttaaatttagtgaaaaaacattctttcgcggccaaccaaaggacggcctcatttatatactctcagcacataggcttagatctaaccccctttggtgcactttcctctcttcccctccgatccaatttcttgacgacattttggtctcccactcccacgaaagtgacaccgttcccctccacccttcctcacaaaccgacatcaacgagatcaaaaaccaaatcaataccagcgtccgatcgagccccaccaccgtcctccccgccaagcctcccatccccaccgcgcctccatccccgtctcctcctcccccttcatccaatctaacctccccaaccggcccctccttcctcttccaagcccaagcaaccgcagtctgtcccctcccctcctcgcgtcccctccgccgccaacaacaacggccccatcaacaccgtcgctcctgggttcgggtccccgcccgacaccttaacggagcccgtttgggataccgtcaagagggacttgtgtctgatcatcatcaatttgaagctcgtcgtcttcccaacccctactgtgaggaccccggaaaggctctcagggattggggtctctgcggtcctttcttcttcattgtgttcttgggtcccgctctgtcctggtctacatttgtcaagaatgtgatgatccattcttgccttctcttgattttgttaaattttttgactgatttgattagcatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

248

Amino Acids

27.8

Weight (kDa)

9.9

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04230 FvH4_3g04240
rosa_chinensis	RchiOBHm_Chr1g0326901 RchiOBHm_Chr2g0167531 RchiOBHm_Chr5g0045341
rosa_laevigata	RLG00000031505 RLG00000034532
rosa_multiflora	Rmu_sc0000338.1_g000031 Rmu_sc0001972.1_g000008
rosa_roxburghii	Rroxscaffold_1G00069380
rosa_rugosa	Rorug04G0033000 Rorug04G0033100 Rorug04G0033200 Rorug04G0423300
rosa_samantha	Rh2AG204700 Rh5AG050700 Rh5BG049800 Rh5DG322400
rosa_wichuraiana	Rw5G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	665
AccII	CGCG	4 cut(s)	17, 51, 308, 418
AclWI	GGATC	2 cut(s)	136, 682
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	26, 718
AfiI	CCNNNNNNNGG	5 cut(s)	61, 65, 471, 520, 592
AgsI	TTSAA	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	464, 659
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	554
AluI	AGCT	1 cut(s)	554
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	3 cut(s)	172, 327, 617
Alw44I	GTGCAC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	136, 682
AoxI	GGCC	4 cut(s)	52, 67, 361, 443
ApaLI	GTGCAC	1 cut(s)	118
ApoI	RAATTY	2 cut(s)	26, 718
AspLEI	GCGC	2 cut(s)	17, 310
AspS9I	GGNCC	6 cut(s)	362, 444, 475, 583, 620, 647
AsuC2I	CCSGG	1 cut(s)	588
AvaII	GGWCC	4 cut(s)	475, 583, 620, 647
BaeGI	GKGCMC	1 cut(s)	122
BanII	GRGCYC	2 cut(s)	269, 502
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	3 cut(s)	305, 322, 456
BceAI	ACGGC	2 cut(s)	82, 458
BciT130I	CCWGG	2 cut(s)	466, 661
BciVI	GTATCC	1 cut(s)	503
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	172, 327, 617
BfuI	GTATCC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	2 cut(s)	52, 430
BlsI	GCNGC	2 cut(s)	53, 431
Bme1390I	CCNGG	3 cut(s)	466, 588, 661
Bme18I	GGWCC	4 cut(s)	475, 583, 620, 647
BmgT120I	GGNCC	6 cut(s)	362, 444, 475, 583, 620, 647
BmiI	GGNNCC	8 cut(s)	364, 446, 476, 477, 499, 585, 648, 649
BmrFI	CCNGG	3 cut(s)	466, 588, 661
BoxI	GACNNNNGTC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	540
BsaI	GGTCTC	2 cut(s)	172, 617
BsaJI	CCNNGG	2 cut(s)	465, 586
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 325, 446, 476
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 65, 471, 520, 592
Bse118I	RCCGGY	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	2 cut(s)	466, 661
BseDI	CCNNGG	2 cut(s)	465, 586
BseGI	GGATG	3 cut(s)	297, 314, 338
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	5 cut(s)	61, 65, 471, 520, 592
BseMII	CTCAG	2 cut(s)	99, 613
BseRI	GAGGAG	3 cut(s)	315, 318, 403
BseSI	GKGCMC	1 cut(s)	122
Bsh1236I	CGCG	4 cut(s)	17, 51, 308, 418
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	4 cut(s)	54, 69, 363, 445
BsiEI	CGRYCG	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	360, 588
BslFI	GGGAC	5 cut(s)	387, 405, 461, 537, 633
BslI	CCNNNNNNNGG	5 cut(s)	61, 65, 471, 520, 592
BsmAI	GTCTC	3 cut(s)	172, 327, 617
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	5 cut(s)	387, 405, 461, 537, 633
BsnI	GGCC	4 cut(s)	54, 69, 363, 445
Bso31I	GGTCTC	2 cut(s)	172, 617
Bsp1286I	GDGCHC	3 cut(s)	122, 269, 502
Bsp143I	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
BspANI	GGCC	4 cut(s)	54, 69, 363, 445
BspCNI	CTCAG	2 cut(s)	98, 612
BspFNI	CGCG	4 cut(s)	17, 51, 308, 418
BspLI	GGNNCC	8 cut(s)	364, 446, 476, 477, 499, 585, 648, 649
BspPI	GGATC	2 cut(s)	136, 682
BspTNI	GGTCTC	2 cut(s)	172, 617
BsrBI	CCGCTC	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	465, 586
BssMI	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
Bst2UI	CCWGG	2 cut(s)	466, 661
Bst4CI	ACNGT	5 cut(s)	193, 277, 458, 515, 578
Bst6I	CTCTTC	2 cut(s)	136, 380
BstDEI	CTNAG	3 cut(s)	85, 98, 599
BstF5I	GGATG	3 cut(s)	297, 314, 338
BstFNI	CGCG	4 cut(s)	17, 51, 308, 418
BstHHI	GCGC	2 cut(s)	17, 310
BstKTI	GATC	6 cut(s)	104, 144, 234, 263, 538, 690
BstMAI	GTCTC	3 cut(s)	172, 327, 617
BstMBI	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
BstMCI	CGRYCG	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	466, 661
BstPAI	GACNNNNGTC	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	464, 586, 659
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	4 cut(s)	17, 51, 308, 418
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	4 cut(s)	54, 69, 363, 445
BtsCI	GGATG	3 cut(s)	297, 314, 338
CfoI	GCGC	2 cut(s)	17, 310
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	6 cut(s)	362, 444, 475, 583, 620, 647
CseI	GACGC	2 cut(s)	244, 407
DdeI	CTNAG	3 cut(s)	85, 98, 599
DpnI	GATC	6 cut(s)	103, 143, 233, 262, 537, 689
DpnII	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
DraI	TTTAAA	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	136, 380
EarI	CTCTTC	2 cut(s)	136, 380
EciI	GGCGGA	1 cut(s)	416
Eco24I	GRGCYC	2 cut(s)	269, 502
Eco31I	GGTCTC	2 cut(s)	172, 617
Eco47I	GGWCC	4 cut(s)	475, 583, 620, 647
EcoO109I	RGGNCCY	3 cut(s)	475, 583, 647
EcoRII	CCWGG	2 cut(s)	464, 659
EcoT38I	GRGCYC	2 cut(s)	269, 502
Esp3I	CGTCTC	1 cut(s)	327
FaiI	YATR	5 cut(s)	78, 80, 93, 743, 745
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	5 cut(s)	387, 405, 461, 537, 633
FauI	CCCGC	4 cut(s)	10, 292, 487, 658
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	665
Fnu4HI	GCNGC	2 cut(s)	52, 430
FokI	GGATG	3 cut(s)	284, 301, 325
FriOI	GRGCYC	2 cut(s)	269, 502
Fsp4HI	GCNGC	2 cut(s)	52, 430
GlaI	GCGC	2 cut(s)	16, 309
GluI	GCNGC	2 cut(s)	52, 430
HaeIII	GGCC	4 cut(s)	54, 69, 363, 445
HapII	CCGG	2 cut(s)	360, 588
HgaI	GACGC	2 cut(s)	244, 407
HhaI	GCGC	2 cut(s)	17, 310
Hin6I	GCGC	2 cut(s)	15, 308
HinP1I	GCGC	2 cut(s)	15, 308
HpaII	CCGG	2 cut(s)	360, 588
Hpy166II	GTNNAC	2 cut(s)	120, 666
Hpy188I	TCNGA	3 cut(s)	141, 260, 535
Hpy188III	TCNNGA	4 cut(s)	152, 518, 676, 706
Hpy8I	GTNNAC	2 cut(s)	120, 666
Hpy99I	CGWCG	2 cut(s)	462, 561
HpyAV	CCTTC	4 cut(s)	216, 345, 379, 710
HpyCH4III	ACNGT	5 cut(s)	193, 277, 458, 515, 578
HpyCH4V	TGCA	1 cut(s)	120
HpyF3I	CTNAG	3 cut(s)	85, 98, 599
HspAI	GCGC	2 cut(s)	15, 308
KflI	GGGWCCC	2 cut(s)	475, 647
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
LmnI	GCTCC	2 cut(s)	467, 497
LpnPI	CCDG	8 cut(s)	265, 373, 451, 478, 586, 601, 646, 673
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	6 cut(s)	103, 143, 233, 262, 537, 689
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
MboII	GAAGA	5 cut(s)	123, 367, 554, 619, 622
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	3 cut(s)	122, 269, 502
MluCI	AATT	4 cut(s)	26, 146, 545, 718
MseI	TTAA	3 cut(s)	24, 492, 716
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	2 cut(s)	360, 588
MspR9I	CCNGG	3 cut(s)	466, 588, 661
MvaI	CCWGG	2 cut(s)	466, 661
MvnI	CGCG	4 cut(s)	17, 51, 308, 418
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
NlaIV	GGNNCC	8 cut(s)	364, 446, 476, 477, 499, 585, 648, 649
NmuCI	GTSAC	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	53, 431
Ple19I	CGATCG	1 cut(s)	263
PpuMI	RGGWCCY	3 cut(s)	475, 583, 647
PshAI	GACNNNNGTC	1 cut(s)	529
Psp5II	RGGWCCY	3 cut(s)	475, 583, 647
Psp6I	CCWGG	2 cut(s)	464, 659
PspGI	CCWGG	2 cut(s)	464, 659
PspN4I	GGNNCC	8 cut(s)	364, 446, 476, 477, 499, 585, 648, 649
PspPI	GGNCC	6 cut(s)	362, 444, 475, 583, 620, 647
PspPPI	RGGWCCY	3 cut(s)	475, 583, 647
PsuI	RGATCY	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	24, 492, 716
SatI	GCNGC	2 cut(s)	52, 430
Sau3AI	GATC	6 cut(s)	101, 141, 231, 260, 535, 687
Sau96I	GGNCC	6 cut(s)	362, 444, 475, 583, 620, 647
ScrFI	CCNGG	3 cut(s)	466, 588, 661
SduI	GDGCHC	3 cut(s)	122, 269, 502
SetI	ASST	3 cut(s)	353, 492, 556
SinI	GGWCC	4 cut(s)	475, 583, 620, 647
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	26, 146, 545, 718
StyD4I	CCNGG	3 cut(s)	464, 586, 659
TaaI	ACNGT	5 cut(s)	193, 277, 458, 515, 578
TaqI	TCGA	1 cut(s)	263
TasI	AATT	4 cut(s)	26, 146, 545, 718
TauI	GCSGC	2 cut(s)	54, 432
Tru1I	TTAA	3 cut(s)	24, 492, 716
Tru9I	TTAA	3 cut(s)	24, 492, 716
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	327, 622
TspGWI	ACGGA	1 cut(s)	510
VneI	GTGCAC	1 cut(s)	118
VpaK11BI	GGWCC	4 cut(s)	475, 583, 620, 647
XapI	RAATTY	2 cut(s)	26, 718
XmiI	GTMKAC	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.