Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017293

Physical Location & Seq

Genomic Coordinates Reverse (-)

38982317 .. 38984213

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAGAGCCAGAAGAGATACTAGGGGTGTTGCTTATGGAGAAGATCTACTCCCAGCGCCGCTCGTCGTCGTCATCTTCCGACGATAACAAGCTGTCGAAGAAGGGCGATGATGTCAAGCACAAGGCTGACATTGGTGAAAAGGAAGGCCTCATATCAGAAGACTCATCCTCATCACTAGATAAGATGGAAGATGAGATGGGTAATTTTGATTTTGAAGCAACGGAAAAGAACCTGATGAAGGAGAAGTTAAATGAACTAAAGGCACTAGATGCCTCGCAAGAAGTTATTGCAAACACCATGAAAGATTTTGGCATTAAAAGGCTTTTATTTAGCATCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

115

Amino Acids

12.82

Weight (kDa)

4.79

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32801
rosa_laevigata	RLG00000034237
rosa_multiflora	Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha	Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana	Rw7G034500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AoxI	GGCC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	2 cut(s)	181, 193
BfaI	CTAG	3 cut(s)	23, 179, 269
BfoI	RGCGCY	1 cut(s)	61
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	167, 336
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	63
BssMI	GATC	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	167, 336
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	167, 336
CfoI	GCGC	1 cut(s)	60
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	5 cut(s)	10, 94, 128, 150, 325
CviKI_1	RGCY	5 cut(s)	10, 94, 128, 150, 325
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	304
FaiI	YATR	3 cut(s)	38, 155, 302
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	2 cut(s)	154, 323
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	3 cut(s)	23, 179, 269
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	82, 160
Hpy99I	CGWCG	3 cut(s)	70, 73, 86
HpyAV	CCTTC	3 cut(s)	97, 140, 235
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	3 cut(s)	24, 68, 248
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	3 cut(s)	23, 179, 269
MalI	GATC	1 cut(s)	47
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	1 cut(s)	45
MboII	GAAGA	6 cut(s)	26, 55, 69, 112, 173, 203
MflI	RGATCY	1 cut(s)	45
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	161, 181, 286
MseI	TTAA	2 cut(s)	251, 318
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	251, 318
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	158
SetI	ASST	2 cut(s)	96, 237
SfaNI	GCATC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	205
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	3 cut(s)	23, 179, 269
StuI	AGGCCT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	205
TauI	GCSGC	1 cut(s)	63
Tru1I	TTAA	2 cut(s)	251, 318
Tru9I	TTAA	2 cut(s)	251, 318
TspDTI	ATGAA	3 cut(s)	254, 270, 317
TspGWI	ACGGA	1 cut(s)	239
XagI	CCTNNNNNAGG	1 cut(s)	239
XspI	CTAG	3 cut(s)	23, 179, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.