Rh1CG405100

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017293
Physical Location & Seq
Forward (+)
67080531 .. 67080854
324 bp
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UTR
Exon/CDS
Intron
Rh1CG405100.1

Sequence Viewer

Length: 324 bp
ATGGCAGAGCCAGAAGAGATACCAGGGGCGTCGCTCATGGAGAAGATCTACTCTCACCACCGCTCCTCGTCGTCTTCGTCGTCTTCCGACGACGACAAGCCGTCCAAGAAGGCCGATGCCGTCAAGCCCGATGACGTCAAGCACAAGGCTGAAAAACACGACATGCCGTCAGCTCACGATTCCGTCAAGTCCAACAAATTCAGGATCTTCGGCCGGGAAAAGCCCGTTCATAAGGTCCTCGGCGGTGGCAAACGTACTATATCTATATCTCTCTCTCACACTTTTCATCTTTCTTTCGCTGTGTTTTTGTATCTGCATTGTTGA

Protein Analysis

107

Amino Acids

11.89

Weight (kDa)

9.04

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017293)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32801
rosa_laevigata RLG00000034237
rosa_multiflora Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana Rw7G034500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 63
AciI CCGC 2 cut(s) 61, 243
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 197
AcyI GRCGYC 2 cut(s) 29, 135
AfaI GTAC 1 cut(s) 256
AhdI GACNNNNNGTC 2 cut(s) 100, 166
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 111, 211
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 66, 75
BceAI ACGGC 3 cut(s) 85, 104, 151
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 215
BglII AGATCT 1 cut(s) 45
Bme1390I CCNGG 2 cut(s) 24, 215
Bme18I GGWCC 1 cut(s) 235
BmeRI GACNNNNNGTC 2 cut(s) 100, 166
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 24, 215
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 2 cut(s) 66, 75
BpuMI CCSGG 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 29, 135
BsaJI CCNNGG 2 cut(s) 23, 238
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 23, 238
BseRI GAGGAG 1 cut(s) 55
BseX3I CGGCCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 113, 213
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 214
BsnI GGCC 2 cut(s) 113, 213
Bsp143I GATC 2 cut(s) 45, 204
BspACI CCGC 2 cut(s) 61, 243
BspANI GGCC 2 cut(s) 113, 213
BspPI GGATC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 23, 238
BssMI GATC 2 cut(s) 45, 204
BssNI GRCGYC 2 cut(s) 29, 135
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 2 cut(s) 29, 135
BstKTI GATC 2 cut(s) 48, 207
BstMBI GATC 2 cut(s) 45, 204
BstMCI CGRYCG 1 cut(s) 214
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 22, 213
BstV2I GAAGAC 2 cut(s) 66, 75
BstX2I RGATCY 2 cut(s) 45, 204
BstYI RGATCY 2 cut(s) 45, 204
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 113, 213
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 37, 163
CviJI RGCY 8 cut(s) 10, 100, 113, 127, 149, 173, 213, 223
CviKI_1 RGCY 8 cut(s) 10, 100, 113, 127, 149, 173, 213, 223
CviQI GTAC 1 cut(s) 255
DpnI GATC 2 cut(s) 47, 206
DpnII GATC 2 cut(s) 45, 204
DriI GACNNNNNGTC 2 cut(s) 100, 166
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 2 cut(s) 100, 166
EarI CTCTTC 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 235
Eco52I CGGCCG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 2 cut(s) 40, 166
FaiI YATR 5 cut(s) 38, 164, 231, 260, 266
FatI CATG 2 cut(s) 36, 162
HaeIII GGCC 2 cut(s) 113, 213
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 2 cut(s) 29, 135
Hin1II CATG 2 cut(s) 40, 166
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 176, 202
Hpy99I CGWCG 5 cut(s) 34, 73, 82, 92, 95
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 135, 253
HpyCH4V TGCA 1 cut(s) 316
HpySE526I ACGT 2 cut(s) 135, 253
Hsp92I GRCGYC 2 cut(s) 29, 135
Hsp92II CATG 2 cut(s) 40, 166
Kzo9I GATC 2 cut(s) 45, 204
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 9, 24, 36, 187, 227
LweI GCATC 1 cut(s) 106
MaeII ACGT 2 cut(s) 135, 253
MalI GATC 2 cut(s) 47, 206
MbiI CCGCTC 1 cut(s) 63
MboI GATC 2 cut(s) 45, 204
MboII GAAGA 5 cut(s) 26, 55, 66, 75, 199
MflI RGATCY 2 cut(s) 45, 204
MluCI AATT 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 111, 216
MnlI CCTC 2 cut(s) 76, 248
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 24, 215
MvaI CCWGG 1 cut(s) 24
NciI CCSGG 1 cut(s) 215
NdeII GATC 2 cut(s) 45, 204
NlaIII CATG 2 cut(s) 40, 166
NmeAIII GCCGAG 1 cut(s) 219
NspI RCATGY 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 77
PfeI GAWTC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 2 cut(s) 45, 204
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 45, 204
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 24, 215
SetI ASST 4 cut(s) 138, 175, 237, 256
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 235
Sse9I AATT 1 cut(s) 197
SsiI CCGC 2 cut(s) 61, 243
StyD4I CCNGG 2 cut(s) 22, 213
TaiI ACGT 2 cut(s) 138, 256
TasI AATT 1 cut(s) 197
TfiI GAWTC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 218, 275
TspGWI ACGGA 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 166
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.