Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000483.1

Orthogroup ID

OG0017293

Physical Location & Seq

Genomic Coordinates Forward (+)

122792 .. 125241

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000483.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgcagtccaagcttgaagacaacgaagaaggcgaggataacgagctcaccggcgacgaaggcttcagatccccttgggtccttgccctcctgtcgctctctcctcgttgtagtcggacagacaacggagctgatcttcatgctcgccgactgtggcttctgcgatcagaaggtttggattggagagctcggtcggcgatctccttctccttgattccactacagccacagcaaatcaatcatctccggcaagattcaagtcggattctggggatttcgaagctgggatatccggccgatgatcggaatccggcggccagtgaccggattccggcgaaaattgaccggattccggcgaagttggccggtgaccggattccggcggccggtgatcggactccggcgaagtcccctatgacgggaaagcttgtagccaaggagataatcgaagccatagacagggagaacaattcggtgatgacttgggaagtaattggaggagacctacttgagcattacaagtgcttcaagttcattctgcatcttaccactcaaatggtgatcaggcctcacctatggtgcattggattttggaatatgaaaaggtggatgacaatgttccagaaccccatgctttgctctagttggggtcagctgctcaccatccatatacctgtccgaatggagaatctctttggcaaccaaaaagatggcctcgacgtccctcagaatctagccttccttttctttccatttgcagtcgtcagcgtcgtcccaccccggatactttggtgccacgttcacgctcagcacgcctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

273

Amino Acids

31.01

Weight (kDa)

7.73

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32801
rosa_laevigata	RLG00000034237
rosa_multiflora	Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha	Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana	Rw7G034500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	723
AccB1I	GGYRCC	1 cut(s)	792
AciI	CCGC	2 cut(s)	314, 383
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	4 cut(s)	294, 315, 363, 384
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	720
AgsI	TTSAA	3 cut(s)	17, 258, 529
AluBI	AGCT	7 cut(s)	13, 46, 131, 188, 283, 427, 655
AluI	AGCT	7 cut(s)	13, 46, 131, 188, 283, 427, 655
Alw21I	GWGCWC	2 cut(s)	48, 190
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	6 cut(s)	294, 315, 363, 384, 566, 712
ApeKI	GCWGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	7 cut(s)	40, 380, 401, 487, 563, 571, 652
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	79
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BanI	GGYRCC	1 cut(s)	792
BanII	GRGCYC	2 cut(s)	48, 190
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	48, 190
BbvI	GCAGC	1 cut(s)	642
BccI	CCATC	2 cut(s)	671, 704
BciVI	GTATCC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	2 cut(s)	642, 734
BfmI	CTRYAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	3 cut(s)	315, 384, 656
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	3 cut(s)	316, 385, 657
Bme1390I	CCNGG	1 cut(s)	781
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	80, 794
BmrFI	CCNGG	1 cut(s)	781
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	781
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	74, 435, 779
BsaWI	WCCGGW	3 cut(s)	324, 345, 372
Bse118I	RCCGGY	3 cut(s)	50, 365, 386
Bse1I	ACTGG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	74, 435, 779
BseGI	GGATG	2 cut(s)	615, 663
BseJI	GATNNNNATC	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	740, 821
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	93, 513
BseX3I	CGGCCG	2 cut(s)	294, 384
BseXI	GCAGC	1 cut(s)	642
BseYI	CCCAGC	1 cut(s)	283
Bsh1285I	CGRYCG	3 cut(s)	194, 297, 387
BshFI	GGCC	6 cut(s)	296, 317, 365, 386, 568, 714
BshNI	GGYRCC	1 cut(s)	792
BsiEI	CGRYCG	3 cut(s)	194, 297, 387
BsiHKAI	GWGCWC	2 cut(s)	48, 190
BslFI	GGGAC	3 cut(s)	394, 707, 758
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	3 cut(s)	394, 707, 758
BsnI	GGCC	6 cut(s)	296, 317, 365, 386, 568, 714
Bso31I	GGTCTC	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	48, 190
Bsp143I	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
Bsp1720I	GCTNAGC	1 cut(s)	807
BspACI	CCGC	2 cut(s)	314, 383
BspANI	GGCC	6 cut(s)	296, 317, 365, 386, 568, 714
BspCNI	CTCAG	2 cut(s)	739, 820
BspLI	GGNNCC	2 cut(s)	80, 794
BspPI	GGATC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	792
BspTNI	GGTCTC	1 cut(s)	495
BsrFI	RCCGGY	3 cut(s)	50, 365, 386
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	3 cut(s)	50, 365, 386
BssECI	CCNNGG	3 cut(s)	74, 435, 779
BssMI	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
BssNI	GRCGYC	1 cut(s)	720
BssT1I	CCWWGG	2 cut(s)	74, 435
Bst4CI	ACNGT	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	145, 813
BstDEI	CTNAG	3 cut(s)	726, 807, 819
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	615, 663
BstKTI	GATC	7 cut(s)	71, 136, 167, 201, 304, 394, 564
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
BstMCI	CGRYCG	3 cut(s)	194, 297, 387
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 60, 194, 362, 812
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	779
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	642
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	68
BstXI	CCANNNNNNTGG	2 cut(s)	556, 710
BstYI	RGATCY	1 cut(s)	68
BstZI	CGGCCG	2 cut(s)	294, 384
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	6 cut(s)	296, 317, 365, 386, 568, 714
BtsCI	GGATG	2 cut(s)	615, 663
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	145, 813
Cfr10I	RCCGGY	3 cut(s)	50, 365, 386
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	757
CviAII	CATG	2 cut(s)	140, 631
DdeI	CTNAG	3 cut(s)	726, 807, 819
DpnI	GATC	7 cut(s)	70, 135, 166, 200, 303, 393, 563
DpnII	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
EaeI	YGGCCR	4 cut(s)	294, 315, 363, 384
EagI	CGGCCG	2 cut(s)	294, 384
Ecl136II	GAGCTC	2 cut(s)	46, 188
EclXI	CGGCCG	2 cut(s)	294, 384
Eco130I	CCWWGG	2 cut(s)	74, 435
Eco147I	AGGCCT	1 cut(s)	568
Eco24I	GRGCYC	2 cut(s)	48, 190
Eco31I	GGTCTC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	79
Eco52I	CGGCCG	2 cut(s)	294, 384
Eco53kI	GAGCTC	2 cut(s)	46, 188
Eco57I	CTGAAG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	368
EcoICRI	GAGCTC	2 cut(s)	46, 188
EcoO109I	RGGNCCY	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	74, 435
EcoT38I	GRGCYC	2 cut(s)	48, 190
ErhI	CCWWGG	2 cut(s)	74, 435
FaeI	CATG	2 cut(s)	143, 634
FaiI	YATR	8 cut(s)	141, 416, 455, 577, 599, 632, 669, 671
FaqI	GGGAC	3 cut(s)	394, 707, 758
FatI	CATG	2 cut(s)	139, 630
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	315, 384, 656
FokI	GGATG	2 cut(s)	622, 650
FriOI	GRGCYC	2 cut(s)	48, 190
Fsp4HI	GCNGC	3 cut(s)	315, 384, 656
FspBI	CTAG	2 cut(s)	642, 734
GluI	GCNGC	3 cut(s)	315, 384, 656
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	6 cut(s)	296, 317, 365, 386, 568, 714
HgaI	GACGC	1 cut(s)	757
Hin1I	GRCGYC	1 cut(s)	720
Hin1II	CATG	2 cut(s)	143, 634
HindIII	AAGCTT	2 cut(s)	11, 425
HphI	GGTGA	7 cut(s)	40, 380, 401, 487, 563, 571, 652
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	8 cut(s)	68, 117, 169, 264, 306, 396, 680, 729
Hpy188III	TCNNGA	1 cut(s)	622
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	3 cut(s)	59, 722, 773
HpyAV	CCTTC	5 cut(s)	23, 53, 164, 214, 748
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	720, 798
HpyCH4V	TGCA	4 cut(s)	4, 541, 582, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 60, 194, 362, 812
HpyF3I	CTNAG	3 cut(s)	726, 807, 819
HpySE526I	ACGT	2 cut(s)	720, 798
Hsp92I	GRCGYC	1 cut(s)	720
Hsp92II	CATG	2 cut(s)	143, 634
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	642
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	642, 734
MaeII	ACGT	2 cut(s)	720, 798
MaeIII	GTNAC	2 cut(s)	320, 368
MalI	GATC	7 cut(s)	70, 135, 166, 200, 303, 393, 563
MboI	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
MboII	GAAGA	3 cut(s)	29, 38, 128
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	48, 190
MluCI	AATT	3 cut(s)	339, 469, 492
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	2 cut(s)	95, 242
MnlI	CCTC	7 cut(s)	28, 98, 114, 491, 579, 725, 735
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	655
MspR9I	CCNGG	1 cut(s)	781
MwoI	GCNNNNNNNGC	5 cut(s)	10, 60, 194, 362, 812
NciI	CCSGG	1 cut(s)	781
NdeII	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
NlaIII	CATG	2 cut(s)	143, 634
NlaIV	GGNNCC	2 cut(s)	80, 794
NmuCI	GTSAC	2 cut(s)	320, 368
NspV	TTCGAA	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 768
PfeI	GAWTC	9 cut(s)	214, 254, 265, 307, 328, 349, 376, 688, 730
PkrI	GCNGC	3 cut(s)	316, 385, 657
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	79
Psp124BI	GAGCTC	2 cut(s)	48, 190
Psp5II	RGGWCCY	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	80, 794
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	2 cut(s)	48, 190
SatI	GCNGC	3 cut(s)	315, 384, 656
Sau3AI	GATC	7 cut(s)	68, 133, 164, 198, 301, 391, 561
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	781
SduI	GDGCHC	2 cut(s)	48, 190
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	278
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	339, 469, 492
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	2 cut(s)	314, 383
SspMI	CTAG	2 cut(s)	642, 734
SstI	GAGCTC	2 cut(s)	48, 190
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	1 cut(s)	779
StyI	CCWWGG	2 cut(s)	74, 435
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	2 cut(s)	723, 801
TaqI	TCGA	3 cut(s)	278, 447, 717
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	339, 469, 492
TauI	GCSGC	2 cut(s)	317, 386
TfiI	GAWTC	9 cut(s)	214, 254, 265, 307, 328, 349, 376, 688, 730
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	320, 368
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	2 cut(s)	320, 368
TspDTI	ATGAA	3 cut(s)	128, 523, 614
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	79
XspI	CTAG	2 cut(s)	642, 734
ZraI	GACGTC	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.