Rh7DG365500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017293
Physical Location & Seq
Reverse (-)
48999205 .. 49003277
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG365500.1

Sequence Viewer

Length: 477 bp
ATGCAGTCCAAGCTTGAAGACGACGAAGAAGGCGAGGATGTGAGTATAAAATGGTTGAGATCGACCTCCTCGGCGGTCCAGAACGAGCTCACCGGCGACGAAGGCTTCCGATCCCCTTGGGTCCTTGCCCTCCTGCCGCTCTCTCCTCGTCGTAGTCGGATAGACAACGGCGCTGATCTTCATGCTCGCCGAGGGTGGCTTCTGCGATCAGAAGGTTTGGATTGGAGAGCTCGGCCGGCGATCTCCTTCTCCTCGATTCCACTGCAGCCACCGCAAATCAATCATCTCCGGCGAGATTCAGGTCAGATTCCGGGGATTTCGAAGCTGGGATATCCGGGTTCGGTCTGCTCCAGCCCATTCTCTTCATTTCCGGCCATATATTCCCCGAAGTCCCGAGCCAGTCTGCTTTTTACAAAAGCTTTTTCTTTCTTTTTTATTTGGATGGAGCCTCTTGGTTGCAAATCAAAACAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

9.34

Isoelectric Point (pI)

75.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017293)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32801
rosa_laevigata RLG00000034237
rosa_multiflora Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana Rw7G034500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AciI CCGC 3 cut(s) 74, 137, 272
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 2 cut(s) 233, 372
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 5 cut(s) 13, 88, 230, 325, 419
AluI AGCT 5 cut(s) 13, 88, 230, 325, 419
Alw21I GWGCWC 2 cut(s) 90, 232
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 2 cut(s) 233, 372
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 76, 121
AsuC2I CCSGG 2 cut(s) 312, 336
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 2 cut(s) 76, 121
BanII GRGCYC 2 cut(s) 90, 232
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 90, 232
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BcnI CCSGG 2 cut(s) 312, 336
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 2 cut(s) 137, 266
BlsI GCNGC 2 cut(s) 138, 267
Bme1390I CCNGG 2 cut(s) 312, 336
Bme18I GGWCC 2 cut(s) 76, 121
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 2 cut(s) 76, 121
BmiI GGNNCC 2 cut(s) 122, 447
BmrFI CCNGG 2 cut(s) 312, 336
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 320
BpuMI CCSGG 2 cut(s) 312, 336
BsaJI CCNNGG 4 cut(s) 69, 116, 190, 311
Bse118I RCCGGY 2 cut(s) 92, 235
Bse1I ACTGG 1 cut(s) 399
BseDI CCNNGG 4 cut(s) 69, 116, 190, 311
BseGI GGATG 2 cut(s) 43, 447
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 3 cut(s) 58, 135, 241
BseX3I CGGCCG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 235, 374
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 90, 232
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 6 cut(s) 93, 236, 289, 311, 335, 371
BslFI GGGAC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 2 cut(s) 235, 374
BsoBI CYCGRG 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 90, 232
Bsp143I GATC 5 cut(s) 59, 110, 175, 206, 240
BspACI CCGC 3 cut(s) 74, 137, 272
BspANI GGCC 2 cut(s) 235, 374
BspLI GGNNCC 2 cut(s) 122, 447
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 92, 235
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 2 cut(s) 92, 235
BssECI CCNNGG 4 cut(s) 69, 116, 190, 311
BssMI GATC 5 cut(s) 59, 110, 175, 206, 240
BssT1I CCWWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 187, 237
BstF5I GGATG 2 cut(s) 43, 447
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 5 cut(s) 62, 113, 178, 209, 243
BstMBI GATC 5 cut(s) 59, 110, 175, 206, 240
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 4 cut(s) 10, 102, 236, 271
BstSCI CCNGG 2 cut(s) 310, 334
BstSFI CTRYAG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 24
BstZI CGGCCG 1 cut(s) 233
BsuRI GGCC 2 cut(s) 235, 374
BtsCI GGATG 2 cut(s) 43, 447
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 260, 476
Cac8I GCNNGC 2 cut(s) 187, 237
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 2 cut(s) 92, 235
Cfr13I GGNCC 2 cut(s) 76, 121
CviAII CATG 1 cut(s) 182
DpnI GATC 5 cut(s) 61, 112, 177, 208, 242
DpnII GATC 5 cut(s) 59, 110, 175, 206, 240
EaeI YGGCCR 2 cut(s) 233, 372
EagI CGGCCG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Ecl136II GAGCTC 2 cut(s) 88, 230
EclXI CGGCCG 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 2 cut(s) 90, 232
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 76, 121
Eco52I CGGCCG 1 cut(s) 233
Eco53kI GAGCTC 2 cut(s) 88, 230
Eco88I CYCGRG 1 cut(s) 393
EcoICRI GAGCTC 2 cut(s) 88, 230
EcoO109I RGGNCCY 1 cut(s) 121
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 2 cut(s) 90, 232
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 185
FaiI YATR 4 cut(s) 47, 183, 377, 379
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 137, 266
FokI GGATG 2 cut(s) 50, 454
FriOI GRGCYC 2 cut(s) 90, 232
Fsp4HI GCNGC 2 cut(s) 137, 266
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 137, 266
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 2 cut(s) 235, 374
HapII CCGG 6 cut(s) 93, 236, 289, 311, 335, 371
HhaI GCGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HindIII AAGCTT 2 cut(s) 11, 417
HinfI GANTC 3 cut(s) 256, 296, 307
HpaII CCGG 6 cut(s) 93, 236, 289, 311, 335, 371
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 110, 159, 211, 306
Hpy188III TCNNGA 2 cut(s) 79, 393
Hpy99I CGWCG 3 cut(s) 26, 101, 153
HpyAV CCTTC 4 cut(s) 23, 95, 206, 256
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 4, 265, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 102, 236, 271
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 171
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 5 cut(s) 59, 110, 175, 206, 240
LmnI GCTCC 2 cut(s) 353, 445
Lsp1109I GCAGC 1 cut(s) 277
MalI GATC 5 cut(s) 61, 112, 177, 208, 242
MbiI CCGCTC 1 cut(s) 139
MboI GATC 5 cut(s) 59, 110, 175, 206, 240
MboII GAAGA 4 cut(s) 29, 38, 170, 354
MhlI GDGCHC 2 cut(s) 90, 232
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 8 cut(s) 28, 76, 79, 140, 156, 185, 262, 459
MroNI GCCGGC 1 cut(s) 235
MspI CCGG 6 cut(s) 93, 236, 289, 311, 335, 371
MspR9I CCNGG 2 cut(s) 312, 336
MwoI GCNNNNNNNGC 4 cut(s) 10, 102, 236, 271
NaeI GCCGGC 1 cut(s) 237
NciI CCSGG 2 cut(s) 312, 336
NdeII GATC 5 cut(s) 59, 110, 175, 206, 240
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 122, 447
NmeAIII GCCGAG 3 cut(s) 50, 211, 215
NspV TTCGAA 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 237
PfeI GAWTC 3 cut(s) 256, 296, 307
PkrI GCNGC 2 cut(s) 138, 267
PpuMI RGGWCCY 1 cut(s) 121
Psp124BI GAGCTC 2 cut(s) 90, 232
Psp5II RGGWCCY 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 122, 447
PspPI GGNCC 2 cut(s) 76, 121
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 267
SacI GAGCTC 2 cut(s) 90, 232
SatI GCNGC 2 cut(s) 137, 266
Sau3AI GATC 5 cut(s) 59, 110, 175, 206, 240
Sau96I GGNCC 2 cut(s) 76, 121
ScrFI CCNGG 2 cut(s) 312, 336
SduI GDGCHC 2 cut(s) 90, 232
SetI ASST 8 cut(s) 15, 68, 90, 217, 232, 304, 327, 421
SfcI CTRYAG 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 320
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 2 cut(s) 76, 121
SsiI CCGC 3 cut(s) 74, 137, 272
SstI GAGCTC 2 cut(s) 90, 232
StyD4I CCNGG 2 cut(s) 310, 334
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 471
TaqI TCGA 3 cut(s) 62, 254, 320
TaqII GACCGA 1 cut(s) 331
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 3 cut(s) 256, 296, 307
TscAI CASTG 2 cut(s) 267, 476
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 170, 354
TspRI CASTG 2 cut(s) 267, 476
VpaK11BI GGWCC 2 cut(s) 76, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.