Rroxscaffold_1G00012730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017293
Physical Location & Seq
Reverse (-)
15587244 .. 15590524
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012730.1

Sequence Viewer

Length: 420 bp
ATGAAAGCTTTGTCGCTCTCTCCTCGTCCGAGTCGGACAGACGACGGCGCCGATCTCCGTGCTCGCCGACCGCGCCTCGCGATCGAAGGTTGGGATTGGAGAGCCCGGTCAACGATCTCCTTCTCCTCGATTCCACCGCAGCCACCGCAAATCAATCATCTCCAGAGAGATTCAGGTCTGATTTCGGGGATTTTGAAGCGGGGATATCTAGGTTCGGTCCTCTCCCCACTCTACGCATCTCGCTGCAATTTTAACTGTTCTGATCTTCAAACTGCAGGAATCTTCAGCAGATCCGACCCCGAAAAGGTTGACTCCACCCAGCAAAACTTTGATAAGAAAATAATAGTTTTGCAAAATCATCCTTACTACTTAGGGAAGCTGGCATGTCAGGATGATGATTCGGACATAAGTGGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.45

Weight (kDa)

8.88

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017293)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32801
rosa_laevigata RLG00000034237
rosa_multiflora Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana Rw7G034500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 73, 80
AciI CCGC 4 cut(s) 71, 137, 146, 199
AclWI GGATC 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 196, 269
AluBI AGCT 2 cut(s) 8, 379
AluI AGCT 2 cut(s) 8, 379
Alw21I GWGCWC 1 cut(s) 64
AlwI GGATC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 139, 243
AspLEI GCGC 2 cut(s) 50, 75
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 151, 230
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BcnI CCSGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 2 cut(s) 140, 244
BlsI GCNGC 2 cut(s) 141, 245
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 358, 397
BseLI CCNNNNNNNGG 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 12, 115
BseXI GCAGC 2 cut(s) 151, 230
BseYI CCCAGC 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 73, 80
Bsh1285I CGRYCG 2 cut(s) 71, 84
BshNI GGYRCC 1 cut(s) 47
BsiEI CGRYCG 2 cut(s) 71, 84
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 64, 106
Bsp143I GATC 5 cut(s) 52, 81, 114, 262, 290
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 4 cut(s) 71, 137, 146, 199
BspFNI CGCG 2 cut(s) 73, 80
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 47
BssMI GATC 5 cut(s) 52, 81, 114, 262, 290
BssNI GRCGYC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 64, 381
BstDEI CTNAG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 358, 397
BstFNI CGCG 2 cut(s) 73, 80
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 75
BstKTI GATC 5 cut(s) 55, 84, 117, 265, 293
BstMBI GATC 5 cut(s) 52, 81, 114, 262, 290
BstMCI CGRYCG 2 cut(s) 71, 84
BstMWI GCNNNNNNNGC 2 cut(s) 72, 145
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 2 cut(s) 73, 80
BstV1I GCAGC 2 cut(s) 151, 230
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BtsCI GGATG 2 cut(s) 358, 397
BtuMI TCGCGA 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 64, 381
CfoI GCGC 2 cut(s) 50, 75
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 1 cut(s) 384
CviJI RGCY 4 cut(s) 8, 104, 142, 379
CviKI_1 RGCY 4 cut(s) 8, 104, 142, 379
DdeI CTNAG 1 cut(s) 370
DinI GGCGCC 1 cut(s) 49
DpnI GATC 5 cut(s) 54, 83, 116, 264, 292
DpnII GATC 5 cut(s) 52, 81, 114, 262, 290
Eco24I GRGCYC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 268
EcoRV GATATC 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 106
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 1 cut(s) 387
FaiI YATR 3 cut(s) 385, 407, 418
FatI CATG 1 cut(s) 383
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 140, 244
FokI GGATG 2 cut(s) 345, 404
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 140, 244
FspBI CTAG 1 cut(s) 209
GlaI GCGC 2 cut(s) 49, 74
GluI GCNGC 2 cut(s) 140, 244
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 51
HapII CCGG 1 cut(s) 106
HhaI GCGC 2 cut(s) 50, 75
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 387
Hin6I GCGC 2 cut(s) 48, 73
HinP1I GCGC 2 cut(s) 48, 73
HincII GTYRAC 2 cut(s) 111, 310
HindII GTYRAC 2 cut(s) 111, 310
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 6 cut(s) 31, 130, 170, 279, 311, 398
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 111, 310
Hpy188I TCNGA 6 cut(s) 30, 36, 180, 262, 295, 403
Hpy188III TCNNGA 3 cut(s) 79, 163, 389
Hpy8I GTNNAC 2 cut(s) 111, 310
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 80, 130
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 246, 275, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 145
HpyF3I CTNAG 1 cut(s) 370
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 387
HspAI GCGC 2 cut(s) 48, 73
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 5 cut(s) 52, 81, 114, 262, 290
LpnPI CCDG 7 cut(s) 119, 159, 176, 261, 332, 365, 374
Lsp1109I GCAGC 2 cut(s) 151, 230
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 209
MalI GATC 5 cut(s) 54, 83, 116, 264, 292
MboI GATC 5 cut(s) 52, 81, 114, 262, 290
MboII GAAGA 2 cut(s) 257, 274
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 64, 106
MluCI AATT 1 cut(s) 247
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 2 cut(s) 40, 305
MmeI TCCRAC 2 cut(s) 14, 318
MnlI CCTC 4 cut(s) 33, 86, 136, 230
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 106
MvnI CGCG 2 cut(s) 73, 80
MwoI GCNNNNNNNGC 2 cut(s) 72, 145
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 106
NdeII GATC 5 cut(s) 52, 81, 114, 262, 290
NlaIII CATG 1 cut(s) 387
NlaIV GGNNCC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 80
NspI RCATGY 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 4 cut(s) 130, 170, 279, 398
PkrI GCNGC 2 cut(s) 141, 245
Ple19I CGATCG 1 cut(s) 84
PleI GAGTC 2 cut(s) 39, 305
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 2 cut(s) 39, 305
PspFI CCCAGC 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 290
PvuI CGATCG 1 cut(s) 84
RruI TCGCGA 1 cut(s) 80
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 2 cut(s) 140, 244
Sau3AI GATC 5 cut(s) 52, 81, 114, 262, 290
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 2 cut(s) 40, 305
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 2 cut(s) 64, 106
SetI ASST 6 cut(s) 10, 91, 178, 214, 309, 381
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 273
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 217
Sse9I AATT 1 cut(s) 247
SsiI CCGC 4 cut(s) 71, 137, 146, 199
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 84, 128
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 247
TfiI GAWTC 4 cut(s) 130, 170, 279, 398
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 2 cut(s) 139, 243
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 217
XceI RCATGY 1 cut(s) 387
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.