Rw7G034500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017293
Physical Location & Seq
Forward (+)
51202526 .. 51214031
11506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034500.1

Sequence Viewer

Length: 429 bp
ATGGCGGAGCCAGAAGAGATACCAGGGGCGACGCTTATGGAGAAGATCTACTCTCACCGCCGCTCGTCATCGTCGTCTTCCAACAATCACAAGTTGTCAAAGAATGACGATGCCGTCAAGAAGGCCGATGATGTCAAGCACAAGGCTGACATTGATTGCTTGCCTGTTGGTATGCTGCTTGTTGGCATGCAGACGGGAAAGCTTGTAGCCAAGGAGATAATCGAAGCCATAGACAGGGAGAACAATTCGGTGATGACTTGGGAAGTAATTGGAGGAGACCTACTTGATCATTACAAGTGCTTCAATCGTCAGCGTCGTCCCACCCCGGATACTTTAGTGCCACGTTCACGCTCAGCACGCCTCTTAGAGTGGAGTTGTCCGCAGAGGATGAACTACTCTCCTCCGCCGCCGCAGCCCGAATCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

142

Amino Acids

16.0

Weight (kDa)

6.9

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017293)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32801
rosa_laevigata RLG00000034237
rosa_multiflora Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana Rw7G034500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 63
AciI CCGC 7 cut(s) 5, 58, 61, 380, 404, 407, 410
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 270
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 175, 412
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 47, 262
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 162, 424
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 270
BfuI GTATCC 1 cut(s) 322
BglII AGATCT 1 cut(s) 45
BisI GCNGC 5 cut(s) 61, 176, 407, 410, 413
BlpI GCTNAGC 1 cut(s) 352
BlsI GCNGC 5 cut(s) 62, 177, 408, 411, 414
Bme1390I CCNGG 2 cut(s) 24, 326
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 24, 326
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 23, 210, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 23, 210, 324
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 2 cut(s) 288, 390
BseXI GCAGC 2 cut(s) 162, 424
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 45, 286
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 7 cut(s) 5, 58, 61, 380, 404, 407, 410
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 23, 210, 324
BssMI GATC 2 cut(s) 45, 286
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 161, 188, 358
BstDEI CTNAG 2 cut(s) 352, 364
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 2 cut(s) 48, 289
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 45, 286
BstMWI GCNNNNNNNGC 2 cut(s) 357, 412
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 22, 324
BstV1I GCAGC 2 cut(s) 162, 424
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 3 cut(s) 161, 188, 358
CseI GACGC 2 cut(s) 40, 302
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 10, 125, 146, 202, 209, 227, 415
CviKI_1 RGCY 7 cut(s) 10, 125, 146, 202, 209, 227, 415
DdeI CTNAG 2 cut(s) 352, 364
DpnI GATC 2 cut(s) 47, 288
DpnII GATC 2 cut(s) 45, 286
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 2 cut(s) 20, 393
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 38, 173, 188, 230
FaqI GGGAC 1 cut(s) 303
FatI CATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 5 cut(s) 61, 176, 407, 410, 413
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 5 cut(s) 61, 176, 407, 410, 413
GluI GCNGC 5 cut(s) 61, 176, 407, 410, 413
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 326
HgaI GACGC 2 cut(s) 40, 302
Hin1II CATG 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 419
HpaII CCGG 1 cut(s) 326
HphI GGTGA 2 cut(s) 47, 262
Hpy166II GTNNAC 1 cut(s) 347
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 3 cut(s) 34, 76, 318
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 412
HpyF3I CTNAG 2 cut(s) 352, 364
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 45, 286
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 9, 24, 36, 177, 220, 339
Lsp1109I GCAGC 2 cut(s) 162, 424
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 343
MalI GATC 2 cut(s) 47, 288
MbiI CCGCTC 1 cut(s) 63
MboI GATC 2 cut(s) 45, 286
MboII GAAGA 3 cut(s) 26, 55, 69
MflI RGATCY 1 cut(s) 45
MluCI AATT 2 cut(s) 244, 267
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 266, 371, 378, 411
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 24, 326
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 357, 412
NciI CCSGG 1 cut(s) 326
NdeII GATC 2 cut(s) 45, 286
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 190
PaeI GCATGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 313
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 5 cut(s) 62, 177, 408, 411, 414
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 45
SatI GCNGC 5 cut(s) 61, 176, 407, 410, 413
Sau3AI GATC 2 cut(s) 45, 286
ScrFI CCNGG 2 cut(s) 24, 326
SetI ASST 3 cut(s) 204, 282, 346
SfaNI GCATC 1 cut(s) 100
SphI GCATGC 1 cut(s) 190
Sse9I AATT 2 cut(s) 244, 267
SsiI CCGC 7 cut(s) 5, 58, 61, 380, 404, 407, 410
StyD4I CCNGG 2 cut(s) 22, 324
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 222, 422
TasI AATT 2 cut(s) 244, 267
TauI GCSGC 3 cut(s) 63, 409, 412
TfiI GAWTC 1 cut(s) 419
TseI GCWGC 2 cut(s) 175, 412
TspDTI ATGAA 1 cut(s) 404
XceI RCATGY 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.