Rh7AG416700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017293
Physical Location & Seq
Forward (+)
55944992 .. 55945369
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG416700.1

Sequence Viewer

Length: 378 bp
ATGGGTTGGATATCGGATATAGCTGGAAGACACTTCTGGAAGGAGAAGTCTATATCCATACGTACATCATCAGTTCTTATGACAAATAGGCCGGAACCCATCAACCATAATAGTATCAATTCCACAGCCATCTTATCTTCGATCGGAATGTGGACGATAAGCCAGAATCCCTTTAATTTGCACCACCAGTTTTTCATCTTCAGGGGTCAGCTGCTCACCATCCATATACCTATCCGAATGGAGAATCTCTTTGGCAACCAAAACGATGGCCACGACGTCCCTCAGAATCTAGCCTTCCTTTTCTTTCCATTTGCAGTCGTCAGCGTCGTCCCACCCCGGATACTTTGGTGCCACGTTCACGCTCAGCACGCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.33

Weight (kDa)

9.3

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017293)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32801
rosa_laevigata RLG00000034237
rosa_multiflora Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana Rw7G034500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 64
AluBI AGCT 2 cut(s) 23, 211
AluI AGCT 2 cut(s) 23, 211
AoxI GGCC 2 cut(s) 89, 268
ApeKI GCWGC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
BalI TGGCCA 1 cut(s) 270
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 198
BccI CCATC 4 cut(s) 107, 137, 227, 260
BciVI GTATCC 1 cut(s) 333
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 337
BmiI GGNNCC 2 cut(s) 96, 350
BmrFI CCNGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 34
Bpu1102I GCTNAGC 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 296, 377
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 91, 270
BshNI GGYRCC 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 92, 337
BslFI GGGAC 2 cut(s) 263, 314
BsmFI GGGAC 2 cut(s) 263, 314
BsnI GGCC 2 cut(s) 91, 270
Bsp143I GATC 1 cut(s) 141
Bsp1720I GCTNAGC 1 cut(s) 363
BspANI GGCC 2 cut(s) 91, 270
BspCNI CTCAG 2 cut(s) 295, 376
BspLI GGNNCC 2 cut(s) 96, 350
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 282, 363, 375
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 335
BstSNI TACGTA 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 266
BsuI GTATCC 1 cut(s) 333
BsuRI GGCC 2 cut(s) 91, 270
BtsCI GGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 369
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 63
CviJI RGCY 7 cut(s) 23, 91, 128, 162, 211, 270, 293
CviKI_1 RGCY 7 cut(s) 23, 91, 128, 162, 211, 270, 293
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 3 cut(s) 282, 363, 375
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 268
Eco105I TACGTA 1 cut(s) 62
Eco32I GATATC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 184
EcoRV GATATC 1 cut(s) 12
FaiI YATR 7 cut(s) 20, 53, 59, 80, 108, 225, 227
FaqI GGGAC 2 cut(s) 263, 314
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 212
HaeIII GGCC 2 cut(s) 91, 270
HapII CCGG 2 cut(s) 92, 337
HgaI GACGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 276
HinfI GANTC 3 cut(s) 166, 244, 286
HpaII CCGG 2 cut(s) 92, 337
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 153, 358
Hpy188I TCNGA 4 cut(s) 16, 146, 236, 285
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 153, 358
Hpy99I CGWCG 2 cut(s) 278, 329
HpyAV CCTTC 2 cut(s) 34, 304
HpyCH4IV ACGT 3 cut(s) 61, 276, 354
HpyCH4V TGCA 2 cut(s) 181, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 3 cut(s) 282, 363, 375
HpySE526I ACGT 3 cut(s) 61, 276, 354
Hsp92I GRCGYC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 7 cut(s) 9, 22, 105, 176, 187, 200, 350
Lsp1109I GCAGC 1 cut(s) 198
MaeI CTAG 1 cut(s) 290
MaeII ACGT 3 cut(s) 61, 276, 354
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 3 cut(s) 39, 129, 190
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 2 cut(s) 118, 175
MluNI TGGCCA 1 cut(s) 270
MnlI CCTC 1 cut(s) 291
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 92, 337
MspR9I CCNGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 337
NdeII GATC 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 96, 350
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 324
PfeI GAWTC 3 cut(s) 166, 244, 286
PkrI GCNGC 1 cut(s) 213
Ple19I CGATCG 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 96, 350
PvuI CGATCG 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 337
SetI ASST 6 cut(s) 25, 64, 213, 232, 279, 357
SnaBI TACGTA 1 cut(s) 62
Sse9I AATT 2 cut(s) 118, 175
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 335
TaiI ACGT 3 cut(s) 64, 279, 357
TaqI TCGA 1 cut(s) 140
TasI AATT 2 cut(s) 118, 175
TfiI GAWTC 3 cut(s) 166, 244, 286
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 184
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.