Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000551.1

Orthogroup ID

OG0017293

Physical Location & Seq

Genomic Coordinates Reverse (-)

20476 .. 25121

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000551.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgtggcttgggacatttgagagtgcagaagaggcagcacgagcctacgacgaggctgcgattctgatgagtggtcgaaatgccaaaacaaactttccggtcaccacaaatgaaattgcagctgctaataataagaactctattaacaacaagagcaactccagcagtactactactacttcaccttctgcaaccctcagcgccaagcttcgcaagtgttgctctgcttccctcacttgcctcaggctcgacaccgagaattcccacatcggagtttggcaaaagcgcgctgggccacgctcagattcgaattggctgatgatggtggagctgggacggaagagtggtttagaagcggagaaggtggagagtactatcgtccctcaagtgtccgatggacatgaaacgcaaggattgaacgaggagaaaaggattgcattgcagatgatagaggaactcctgaggcgttacccttgcttcgctggaagtaatagtggcggttgtgctcgcagtcggctcctggggagactgggactggaagtaaggtcgccgggtatagaagaagccatggcggagccagaagagataccaggggcgacgcttatggagaagatctactctcaccgccgctcgtcatcgtcgtcttccaacaatcacaagctgtcaaagaatgccgatgccgtcaagaaggccgatgatgtcaagcacaaggctgacatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

240

Amino Acids

26.13

Weight (kDa)

8.25

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32801
rosa_laevigata	RLG00000034237
rosa_multiflora	Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha	Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana	Rw7G034500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	630
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	356, 498, 572, 625, 628
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	2 cut(s)	169, 373
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	519, 589
AluBI	AGCT	4 cut(s)	122, 208, 331, 661
AluI	AGCT	4 cut(s)	122, 208, 331, 661
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	520
AoxI	GGCC	2 cut(s)	293, 690
ApeKI	GCWGC	4 cut(s)	35, 56, 119, 122
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	3 cut(s)	203, 288, 290
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	94, 174, 614
AsuII	TTCGAA	1 cut(s)	308
AxyI	CCTNAGG	2 cut(s)	242, 461
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	508
BbvCI	CCTCAGC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	43, 47, 109, 131
BccI	CCATC	2 cut(s)	316, 389
BceAI	ACGGC	1 cut(s)	665
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	521, 591
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	520
BfoI	RGCGCY	1 cut(s)	204
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	5 cut(s)	36, 57, 120, 123, 628
BlsI	GCNGC	5 cut(s)	37, 58, 121, 124, 629
BmcAI	AGTACT	2 cut(s)	169, 373
Bme1390I	CCNGG	3 cut(s)	521, 552, 591
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	518, 576
BmrFI	CCNGG	3 cut(s)	521, 552, 591
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	520, 567, 590
BsaWI	WCCGGW	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	534, 540
Bse21I	CCTNAGG	2 cut(s)	242, 461
Bse3DI	GCAATG	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	521, 591
BseDI	CCNNGG	3 cut(s)	520, 567, 590
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	4 cut(s)	211, 256, 315, 452
BseNI	ACTGG	2 cut(s)	534, 540
BsePI	GCGCGC	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	4 cut(s)	43, 47, 109, 131
BseYI	CCCAGC	2 cut(s)	290, 331
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	295, 692
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	98, 551
BslFI	GGGAC	4 cut(s)	25, 348, 365, 546
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	4 cut(s)	25, 348, 365, 546
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	2 cut(s)	295, 692
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	1 cut(s)	612
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	5 cut(s)	356, 498, 572, 625, 628
BspANI	GGCC	2 cut(s)	295, 692
BspCNI	CTCAG	4 cut(s)	210, 255, 314, 453
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	518, 576
BspT104I	TTCGAA	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	534, 540
BssECI	CCNNGG	3 cut(s)	520, 567, 590
BssHII	GCGCGC	1 cut(s)	286
BssMI	GATC	1 cut(s)	612
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	521, 591
Bst6I	CTCTTC	3 cut(s)	24, 335, 576
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	288, 508
BstDEI	CTNAG	4 cut(s)	197, 242, 301, 461
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	203, 288, 290
BstKTI	GATC	1 cut(s)	615
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	612
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 162, 219, 292
BstNI	CCWGG	2 cut(s)	521, 591
BstNSI	RCATGY	1 cut(s)	721
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	3 cut(s)	519, 550, 589
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	43, 47, 109, 131
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
Bsu36I	CCTNAGG	2 cut(s)	242, 461
BsuRI	GGCC	2 cut(s)	295, 692
BtgI	CCRYGG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	288, 508
CfoI	GCGC	3 cut(s)	203, 288, 290
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	168, 372
CviAII	CATG	3 cut(s)	401, 568, 718
CviQI	GTAC	2 cut(s)	168, 372
DdeI	CTNAG	4 cut(s)	197, 242, 301, 461
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
Eam1104I	CTCTTC	3 cut(s)	24, 335, 576
EarI	CTCTTC	3 cut(s)	24, 335, 576
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	567
Eco81I	CCTNAGG	2 cut(s)	242, 461
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	519, 589
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	404, 571, 721
FaiI	YATR	5 cut(s)	402, 557, 569, 605, 719
FaqI	GGGAC	4 cut(s)	25, 348, 365, 546
FatI	CATG	3 cut(s)	400, 567, 717
Fnu4HI	GCNGC	5 cut(s)	36, 57, 120, 123, 628
Fsp4HI	GCNGC	5 cut(s)	36, 57, 120, 123, 628
GlaI	GCGC	3 cut(s)	202, 287, 289
GluI	GCNGC	5 cut(s)	36, 57, 120, 123, 628
GsaI	CCCAGC	2 cut(s)	294, 335
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	295, 692
HapII	CCGG	2 cut(s)	98, 551
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	3 cut(s)	203, 288, 290
Hin1II	CATG	3 cut(s)	404, 571, 721
Hin6I	GCGC	3 cut(s)	201, 286, 288
HinP1I	GCGC	3 cut(s)	201, 286, 288
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	61, 305
HpaII	CCGG	2 cut(s)	98, 551
HphI	GGTGA	3 cut(s)	94, 174, 614
Hpy188I	TCNGA	4 cut(s)	66, 272, 304, 394
Hpy188III	TCNNGA	2 cut(s)	460, 685
Hpy99I	CGWCG	3 cut(s)	53, 601, 643
HpyAV	CCTTC	3 cut(s)	195, 355, 682
HpyCH4V	TGCA	5 cut(s)	26, 119, 191, 437, 442
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 162, 219, 292
HpyF3I	CTNAG	4 cut(s)	197, 242, 301, 461
Hsp92II	CATG	3 cut(s)	404, 571, 721
HspAI	GCGC	3 cut(s)	201, 286, 288
Kzo9I	GATC	1 cut(s)	612
LmnI	GCTCC	3 cut(s)	328, 522, 574
Lsp1109I	GCAGC	4 cut(s)	43, 47, 109, 131
LweI	GCATC	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	100, 467
MalI	GATC	1 cut(s)	614
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	1 cut(s)	612
MboII	GAAGA	6 cut(s)	41, 352, 572, 593, 622, 636
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	3 cut(s)	114, 259, 310
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	9 cut(s)	25, 46, 206, 242, 251, 393, 415, 445, 456
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	98, 551
MspR9I	CCNGG	3 cut(s)	521, 552, 591
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	521, 591
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 162, 219, 292
NciI	CCSGG	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	612
NlaIII	CATG	3 cut(s)	404, 571, 721
NlaIV	GGNNCC	2 cut(s)	518, 576
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	308
PauI	GCGCGC	1 cut(s)	286
PciI	ACATGT	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	638
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	2 cut(s)	61, 305
PkrI	GCNGC	5 cut(s)	37, 58, 121, 124, 629
PscI	ACATGT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	519, 589
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	2 cut(s)	290, 331
PspGI	CCWGG	2 cut(s)	519, 589
PspN4I	GGNNCC	2 cut(s)	518, 576
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	612
PteI	GCGCGC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	169, 373
RsaNI	GTAC	2 cut(s)	168, 372
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	5 cut(s)	36, 57, 120, 123, 628
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	2 cut(s)	169, 373
ScrFI	CCNGG	3 cut(s)	521, 552, 591
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	7 cut(s)	124, 187, 210, 333, 366, 548, 663
SfaNI	GCATC	1 cut(s)	667
SfuI	TTCGAA	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	114, 259, 310
SsiI	CCGC	5 cut(s)	356, 498, 572, 625, 628
StyD4I	CCNGG	3 cut(s)	519, 550, 589
StyI	CCWWGG	1 cut(s)	567
TaqI	TCGA	3 cut(s)	76, 249, 308
TasI	AATT	3 cut(s)	114, 259, 310
TatI	WGTACW	2 cut(s)	167, 371
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	61, 305
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	35, 56, 119, 122
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	126, 417
TspGWI	ACGGA	1 cut(s)	352
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	721
ZrmI	AGTACT	2 cut(s)	169, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.