RLG00000034552

Hyccin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014272
Physical Location & Seq
Reverse (-)
44834630 .. 44837909
3280 bp
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UTR
Exon/CDS
Intron
RLM00000034552

Sequence Viewer

Length: 690 bp
ATGAGAAGAAGAGAAGAAATTGAAAACCTAAACGATCCAGACAGAGCTGAATTGCATTCCATCTCCAAAGACCGCTCCCTCGCCACTCTCTTTGACCATTCTCTCTCCACCGCCCTCTCCTCCCTCGCTGACTCCAATGGCCCTGCTCTCTCTCTCCTCTCCTTCCTTGAAGCCTACACCACTGTTTCGACCGACCTTTCCGCCCCTCTCTCTGGCTCGGGATCCGACCCTCTCTGCAACTGGCTTTACGACACTTTCCTCCTTTCCGACTCCCATCTTCGATTAGTCGTTTTCTCCATCCTCCCTCTCCTCGCCGGCCTCTACTTCTCACGCATCCACTCTCTGACGTTACTTCCCTCCCTCATCGGCTTTGATGTGGTGCTCCTTGCTCTCTACGCCGCCAAGACCAAGGCCAGAAAAGGCAAGCCCATTGTTGTTTCAATCTTGGATCTATCTCAGCCCTCCCTCTACCTGAGGCTATATCTCAATTGGCGGAGCAACCATCCCTGCGCCGCGACTCTGTCAGAGCTAGTCGAAGGGGAGAGCTTGTTCACAAGGAGAAAGACACTGCTGAAAGACATCTCCGGCGAGGCTCGAGAAGGTGAAGTGCCGATTCCGGCAACTCGATGTAAAGCCTTGCCTGAAGACCACGAAGAACTTAGGGTTCGGGTCTGGGTCTGCAACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hyccin

Protein Analysis

230

Amino Acids

25.45

Weight (kDa)

6.08

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hyccin PF09790 44 - 157 7.9e-18 Hyccin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64090
fragaria_vesca FvH4_1g19990
malus_domestica MD05G1042400.v1.1 MD10G1049000.v1.1
prunus_persica Prupe.8G059200_v2.0.a1
pyrus_communis pycom05g03500
rosa_chinensis RchiOBHm_Chr2g0111931
rosa_laevigata RLG00000017939 RLG00000034552
rosa_multiflora Rmu_sc0005679.1_g000010
rosa_roxburghii Rroxscaffold_2G00131980
rosa_rugosa Rorug02G0177300
rosa_samantha Rh2AG229700 Rh2BG242400 Rh2CG233800 Rh2DG237400
rosa_wichuraiana Rw2G017770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 75
AccII CGCG 1 cut(s) 515
AciI CCGC 6 cut(s) 73, 111, 201, 399, 493, 513
AclWI GGATC 4 cut(s) 29, 216, 229, 456
AcuI CTGAAG 1 cut(s) 663
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 3 cut(s) 23, 170, 441
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 3 cut(s) 47, 529, 546
AluI AGCT 3 cut(s) 47, 529, 546
Alw21I GWGCWC 1 cut(s) 384
AlwI GGATC 4 cut(s) 29, 216, 229, 456
Ama87I CYCGRG 2 cut(s) 217, 594
AoxI GGCC 3 cut(s) 139, 316, 411
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 614
AvaI CYCGRG 2 cut(s) 217, 594
AxyI CCTNAGG 1 cut(s) 473
BamHI GGATCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 384
BccI CCATC 4 cut(s) 68, 282, 305, 510
BfaI CTAG 1 cut(s) 530
BisI GCNGC 2 cut(s) 399, 513
BlsI GCNGC 2 cut(s) 400, 514
BmeT110I CYCGRG 2 cut(s) 217, 594
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 245, 685
Bse21I CCTNAGG 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 3 cut(s) 297, 333, 502
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 464, 470
BseNI ACTGG 2 cut(s) 245, 685
BseRI GAGGAG 3 cut(s) 109, 146, 299
Bsh1236I CGCG 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 141, 318, 413
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 2 cut(s) 217, 594
BsiSI CCGG 3 cut(s) 315, 585, 617
BslI CCNNNNNNNGG 1 cut(s) 212
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 3 cut(s) 141, 318, 413
BsoBI CYCGRG 2 cut(s) 217, 594
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 3 cut(s) 34, 221, 448
BspACI CCGC 6 cut(s) 73, 111, 201, 399, 493, 513
BspANI GGCC 3 cut(s) 141, 318, 413
BspCNI CTCAG 2 cut(s) 465, 469
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 4 cut(s) 29, 216, 229, 456
BsrBI CCGCTC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 2 cut(s) 245, 685
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 3 cut(s) 34, 221, 448
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 2 cut(s) 316, 425
BstDEI CTNAG 3 cut(s) 456, 473, 659
BstF5I GGATG 3 cut(s) 297, 333, 502
BstFNI CGCG 1 cut(s) 515
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 3 cut(s) 37, 224, 451
BstMBI GATC 3 cut(s) 34, 221, 448
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstUI CGCG 1 cut(s) 515
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 2 cut(s) 221, 448
BstYI RGATCY 2 cut(s) 221, 448
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 3 cut(s) 141, 318, 413
BtsCI GGATG 3 cut(s) 297, 333, 502
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 180, 566
Cac8I GCNNGC 2 cut(s) 316, 425
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
DdeI CTNAG 3 cut(s) 456, 473, 659
DpnI GATC 3 cut(s) 36, 223, 450
DpnII GATC 3 cut(s) 34, 221, 448
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
EciI GGCGGA 2 cut(s) 190, 508
Eco130I CCWWGG 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 473
Eco88I CYCGRG 2 cut(s) 217, 594
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaiI YATR 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 399, 513
FokI GGATG 3 cut(s) 284, 320, 489
Fsp4HI GCNGC 2 cut(s) 399, 513
FspBI CTAG 1 cut(s) 530
GlaI GCGC 1 cut(s) 511
GluI GCNGC 2 cut(s) 399, 513
HaeIII GGCC 3 cut(s) 141, 318, 413
HapII CCGG 3 cut(s) 315, 585, 617
HhaI GCGC 1 cut(s) 512
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 4 cut(s) 131, 269, 517, 613
HpaII CCGG 3 cut(s) 315, 585, 617
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 4 cut(s) 226, 268, 345, 526
Hpy188III TCNNGA 3 cut(s) 38, 219, 596
Hpy8I GTNNAC 1 cut(s) 552
HpyAV CCTTC 3 cut(s) 172, 530, 593
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 55, 237, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 3 cut(s) 456, 473, 659
HpySE526I ACGT 1 cut(s) 347
HspAI GCGC 1 cut(s) 510
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 34, 221, 448
LmnI GCTCC 3 cut(s) 80, 387, 495
LweI GCATC 1 cut(s) 342
MaeI CTAG 1 cut(s) 530
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 348
MalI GATC 3 cut(s) 36, 223, 450
MbiI CCGCTC 1 cut(s) 75
MboI GATC 3 cut(s) 34, 221, 448
MboII GAAGA 6 cut(s) 18, 21, 26, 269, 656, 665
MfeI CAATTG 1 cut(s) 487
MflI RGATCY 2 cut(s) 221, 448
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 3 cut(s) 18, 50, 487
MlyI GAGTC 3 cut(s) 125, 263, 511
MmeI TCCRAC 2 cut(s) 249, 291
MroNI GCCGGC 1 cut(s) 314
MspI CCGG 3 cut(s) 315, 585, 617
MunI CAATTG 1 cut(s) 487
Mva1269I GAATGC 1 cut(s) 55
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 1 cut(s) 395
NaeI GCCGGC 1 cut(s) 316
NdeII GATC 3 cut(s) 34, 221, 448
NgoMIV GCCGGC 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 594
PctI GAATGC 1 cut(s) 55
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 613
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 2 cut(s) 400, 514
PleI GAGTC 3 cut(s) 125, 263, 511
PpsI GAGTC 3 cut(s) 125, 263, 511
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 2 cut(s) 221, 448
PsyI GACNNNGTC 1 cut(s) 520
SatI GCNGC 2 cut(s) 399, 513
Sau3AI GATC 3 cut(s) 34, 221, 448
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 3 cut(s) 125, 263, 511
SduI GDGCHC 1 cut(s) 384
SetI ASST 8 cut(s) 30, 49, 198, 350, 474, 531, 548, 604
SfaNI GCATC 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 594
SlaI CTCGAG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
Sse9I AATT 3 cut(s) 18, 50, 487
SsiI CCGC 6 cut(s) 73, 111, 201, 399, 493, 513
SspMI CTAG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 350
TaqI TCGA 5 cut(s) 188, 280, 534, 595, 625
TaqII GACCGA 1 cut(s) 206
TasI AATT 3 cut(s) 18, 50, 487
TauI GCSGC 2 cut(s) 401, 515
TfiI GAWTC 1 cut(s) 613
TscAI CASTG 2 cut(s) 187, 573
TspRI CASTG 2 cut(s) 187, 573
Tth111I GACNNNGTC 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 594
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.