Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001709

Physical Location & Seq

Genomic Coordinates Reverse (-)

66061205 .. 66067567

Gene Structure 6363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGCAAAAATTGGGGTTTCAAATAAATAGCCATGTGTATGATGGCTTAATCAGAGCAATTGTTCCAGAAAGAGGTTTCAGCAGTGGGATGGAAATTTTGAAAAGTATGCAGCAGAGAAATTTGAAGCCATATGATCGCACTCTTGCAACCCTTTCAATAGGTTGTAGCAAGGCATTAGAATTGGGTTTAGCTGAGACTCTGCTGGATCAAATATCTGTGTATTCACATCCACATGCTTTTAATGCTTTTCTTGCAGCATGTGACATTAGGGATCAACCTGAAAATGCCGTGCAGATGCTAGCTAAAATGAAACATCCACAAGTCACGCCAAATATATGGACATATGAGCAGCTGTTTTCCTTGTTTGGTAACGTGAATGCCCCATATGAAGAGGGCAACATGTTGTCACAGGTAGATGCTGCTAAACGGATTAAAGCTATAGAAATGGATATGGCGAACTATGGCATTCAGCACAGTTTTGTGTCAATGAATAACTTGCAGAAAGCCCTTGGAGCAGAAGGGATGACAAGAGAGCTGATCCATTATTTACATGTGGCGGAGAATCTTTTTTGTCGTAATCACATTTATCTGGGAACACCTATCTATAATACGGTGTTGCATTCACTTGTTGAGAGTGAGGAAAGCCAAATGGCAATTAAGATGTTTAAAAACATGAAGTCATGTGGTGTCCCGGCAGATGCTGCAACTTATACTATAATGATTAAGTGTTGTAAAATTCTCAGATGTTATAGATCTGCTTGTGCATTGGTTTCTATGATGTTGCGAGATGGCTTTTACCCTCTAACAATAACTTACACTGCTCTCATAAAGGTAATTTTATTCTATTTGAGGCATTCATGCTTCTTTATTGATGATATCATTGATGAAGCATTGAATCTTTTGGATCAAGCCAGCTCAGAAGGGAATAAACTTGATACTTTAGTTTTCAATACCATTCTTCGAAAAGCCTGTGAAAAGGAACTGATTGATGTAGTTGAGTTTCTTGTTGAGTGGATGCACCAAGAAAAAATCCGGCCTGATTCGGGGACGTGCTCTTCTGTTTTCACTGCATATACGAACTGTGGTTTTTACAGCACAGCCATGGAAGCATTGCAGGTTTTGAGTATGCGTATAATATGTGACGAACATGGAAGCTGTTCAGAAAAGACAAAATTTGAGGACGACTATATCTTTGCTGAAGACGAGGGAGCTGAATCCCGTATAATCCAGCATTTTAAAGATTCTAAAGAGGACTTGGCTGTTGCCCTACTGAATTTAAGATGGTGCGCGGTGCTTGGCTTCCCAATTTCTTGGTTGCCTGATCAAAGCCCGTGGGCAAAAAGACTCTCAACTAACTATACTGCCAGGATAGGAGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

461

Amino Acids

52.05

Weight (kDa)

5.75

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	201 - 244	4.8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76280 AT1G76280 AT1G76280 AT1G76280 AT1G76280
fragaria_vesca	FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510
malus_domestica	MD08G1002500.v1.1
prunus_persica	Prupe.2G013700_v2.0.a1 Prupe.2G013700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0270441 RchiOBHm_Chr6g0304231
rosa_laevigata	RLG00000011004 RLG00000013792 RLG00000035378
rosa_multiflora	Rmu_sc0009479.1_g000010 Rmu_ssc0000218.1_g000015
rosa_roxburghii	Rroxscaffold_7G00163950 Rroxscaffold_7G00197930
rosa_rugosa	Rorug05G0331600 Rorug05G0331700 Rorug06G0329000
rosa_samantha	Rh5AG395800 Rh6AG173300 Rh6AG442800 Rh6BG177200 Rh6BG459900 Rh6CG173000 Rh6CG455200 Rh6DG165400 Rh6DG442200
rosa_wichuraiana	Rw0G006810 Rw5G037260 Rw6G014750 Rw6G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1105
AccII	CGCG	1 cut(s)	1289
AciI	CCGC	2 cut(s)	557, 1289
AclWI	GGATC	4 cut(s)	213, 279, 532, 912
AcsI	RAATTY	5 cut(s)	93, 118, 735, 1172, 1273
AcuI	CTGAAG	1 cut(s)	1218
AfiI	CCNNNNNNNGG	2 cut(s)	71, 1043
AflIII	ACRYGT	2 cut(s)	399, 550
AgsI	TTSAA	6 cut(s)	20, 100, 124, 156, 895, 949
AjiI	CACGTC	1 cut(s)	1050
AjnI	CCWGG	1 cut(s)	1364
AluBI	AGCT	9 cut(s)	191, 302, 352, 437, 535, 915, 1155, 1211, 1376
AluI	AGCT	9 cut(s)	191, 302, 352, 437, 535, 915, 1155, 1211, 1376
Alw21I	GWGCWC	1 cut(s)	1055
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	4 cut(s)	213, 279, 532, 912
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	1034
ApeKI	GCWGC	5 cut(s)	109, 254, 349, 419, 701
ApoI	RAATTY	5 cut(s)	93, 118, 735, 1172, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	1175, 1207
Asp700I	GAANNNNTTC	1 cut(s)	1156
AspLEI	GCGC	1 cut(s)	1289
AsuC2I	CCSGG	1 cut(s)	692
AsuII	TTCGAA	1 cut(s)	961
AsuNHI	GCTAGC	1 cut(s)	298
BaeI	ACNNNNGTAYC	2 cut(s)	927, 960
BbsI	GAAGAC	1 cut(s)	1206
Bbv12I	GWGCWC	1 cut(s)	1055
BbvI	GCAGC	5 cut(s)	121, 266, 361, 406, 688
BccI	CCATC	4 cut(s)	35, 82, 782, 1275
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	1366
BclI	TGATCA	1 cut(s)	1321
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	1105
BglII	AGATCT	1 cut(s)	752
BisI	GCNGC	5 cut(s)	110, 255, 350, 420, 702
BlsI	GCNGC	5 cut(s)	111, 256, 351, 421, 703
Bme1390I	CCNGG	2 cut(s)	692, 1366
BmgBI	CACGTC	1 cut(s)	1050
BmrFI	CCNGG	2 cut(s)	692, 1366
BmsI	GCATC	4 cut(s)	285, 406, 688, 1005
BmtI	GCTAGC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	1206
Bpu14I	TTCGAA	1 cut(s)	961
BpuMI	CCSGG	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	508, 1101, 1331
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 1043
Bse3DI	GCAATG	1 cut(s)	1109
BseBI	CCWGG	1 cut(s)	1366
BseDI	CCNNGG	3 cut(s)	508, 1101, 1331
BseGI	GGATG	5 cut(s)	93, 226, 313, 528, 1020
BseLI	CCNNNNNNNGG	2 cut(s)	71, 1043
BseMI	GCAATG	1 cut(s)	1109
BseMII	CTCAG	3 cut(s)	183, 754, 930
BseXI	GCAGC	5 cut(s)	121, 266, 361, 406, 688
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	1289
BshFI	GGCC	1 cut(s)	1036
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiSI	CCGG	2 cut(s)	692, 1033
BslFI	GGGAC	2 cut(s)	674, 1060
BslI	CCNNNNNNNGG	2 cut(s)	71, 1043
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	674, 1060
BsmI	GAATGC	4 cut(s)	382, 465, 619, 853
BsnI	GGCC	1 cut(s)	1036
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
Bsp19I	CCATGG	1 cut(s)	1101
BspACI	CCGC	2 cut(s)	557, 1289
BspANI	GGCC	1 cut(s)	1036
BspCNI	CTCAG	3 cut(s)	184, 753, 929
BspFNI	CGCG	1 cut(s)	1289
BspMI	ACCTGC	1 cut(s)	1105
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	4 cut(s)	213, 279, 532, 912
BspQI	GCTCTTC	1 cut(s)	1060
BspT104I	TTCGAA	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	1109
BssECI	CCNNGG	3 cut(s)	508, 1101, 1331
BssMI	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
BssT1I	CCWWGG	2 cut(s)	508, 1101
Bst2UI	CCWGG	1 cut(s)	1366
Bst4CI	ACNGT	3 cut(s)	476, 613, 1082
Bst6I	CTCTTC	2 cut(s)	384, 1060
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	300, 913
BstDEI	CTNAG	3 cut(s)	192, 740, 916
BstDSI	CCRYGG	2 cut(s)	1101, 1331
BstF5I	GGATG	5 cut(s)	93, 226, 313, 528, 1020
BstFNI	CGCG	1 cut(s)	1289
BstHHI	GCGC	1 cut(s)	1289
BstKTI	GATC	7 cut(s)	136, 208, 274, 540, 755, 907, 1324
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 251, 512, 701, 1106
BstNI	CCWGG	1 cut(s)	1366
BstNSI	RCATGY	4 cut(s)	236, 261, 403, 554
BstSCI	CCNGG	2 cut(s)	690, 1364
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	1289
BstV1I	GCAGC	5 cut(s)	121, 266, 361, 406, 688
BstV2I	GAAGAC	1 cut(s)	1206
BstX2I	RGATCY	1 cut(s)	752
BstXI	CCANNNNNNTGG	2 cut(s)	336, 1311
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	1 cut(s)	1036
BtgI	CCRYGG	2 cut(s)	1101, 1331
BtrI	CACGTC	1 cut(s)	1050
BtsCI	GGATG	5 cut(s)	93, 226, 313, 528, 1020
BtsI	GCAGTG	3 cut(s)	88, 816, 1065
BtsIMutI	CAGTG	3 cut(s)	88, 816, 1065
BveI	ACCTGC	1 cut(s)	1105
Cac8I	GCNNGC	2 cut(s)	300, 913
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	1 cut(s)	1289
CspCI	CAANNNNNGTGG	2 cut(s)	1313, 1348
DdeI	CTNAG	3 cut(s)	192, 740, 916
DpnI	GATC	7 cut(s)	135, 207, 273, 539, 754, 906, 1323
DpnII	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
DraI	TTTAAA	2 cut(s)	667, 1237
Eam1104I	CTCTTC	2 cut(s)	384, 1060
EarI	CTCTTC	2 cut(s)	384, 1060
EciI	GGCGGA	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	508, 1101
Eco32I	GATATC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	1218
EcoRII	CCWGG	1 cut(s)	1364
EcoRV	GATATC	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	508, 1101
ErhI	CCWWGG	2 cut(s)	508, 1101
FaqI	GGGAC	2 cut(s)	674, 1060
FauNDI	CATATG	3 cut(s)	130, 343, 385
FbaI	TGATCA	1 cut(s)	1321
Fnu4HI	GCNGC	5 cut(s)	110, 255, 350, 420, 702
FokI	GGATG	5 cut(s)	100, 213, 300, 535, 1027
Fsp4HI	GCNGC	5 cut(s)	110, 255, 350, 420, 702
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	1288
GluI	GCNGC	5 cut(s)	110, 255, 350, 420, 702
HaeIII	GGCC	1 cut(s)	1036
HapII	CCGG	2 cut(s)	692, 1033
HhaI	GCGC	1 cut(s)	1289
Hin6I	GCGC	1 cut(s)	1287
HinP1I	GCGC	1 cut(s)	1287
HinfI	GANTC	7 cut(s)	196, 562, 895, 1040, 1214, 1241, 1344
HpaII	CCGG	2 cut(s)	692, 1033
Hpy188I	TCNGA	4 cut(s)	53, 743, 919, 1162
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	512, 914
HpyCH4III	ACNGT	3 cut(s)	476, 613, 1082
HpyCH4IV	ACGT	2 cut(s)	372, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 251, 512, 701, 1106
HpyF3I	CTNAG	3 cut(s)	192, 740, 916
HpySE526I	ACGT	2 cut(s)	372, 1049
HspAI	GCGC	1 cut(s)	1287
Ksp22I	TGATCA	1 cut(s)	1321
Kzo9I	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
LguI	GCTCTTC	1 cut(s)	1060
LmnI	GCTCC	3 cut(s)	512, 1208, 1373
Lsp1109I	GCAGC	5 cut(s)	121, 266, 361, 406, 688
LweI	GCATC	4 cut(s)	285, 406, 688, 1005
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	372, 1049
MaeIII	GTNAC	5 cut(s)	260, 322, 368, 405, 1139
MalI	GATC	7 cut(s)	135, 207, 273, 539, 754, 906, 1323
MboI	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
MboII	GAAGA	4 cut(s)	401, 950, 1047, 1211
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	1 cut(s)	1055
MlyI	GAGTC	2 cut(s)	190, 1338
MnlI	CCTC	8 cut(s)	65, 385, 631, 810, 843, 1171, 1198, 1243
MroXI	GAANNNNTTC	1 cut(s)	1156
MseI	TTAA	8 cut(s)	47, 240, 432, 657, 666, 723, 1236, 1277
MslI	CAYNNNNRTG	3 cut(s)	36, 231, 1100
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	692, 1033
MspR9I	CCNGG	2 cut(s)	692, 1366
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	4 cut(s)	382, 465, 619, 853
MvaI	CCWGG	1 cut(s)	1366
MvnI	CGCG	1 cut(s)	1289
MwoI	GCNNNNNNNGC	5 cut(s)	242, 251, 512, 701, 1106
NciI	CCSGG	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	1101
NdeI	CATATG	3 cut(s)	130, 343, 385
NdeII	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
NheI	GCTAGC	1 cut(s)	298
NmuCI	GTSAC	4 cut(s)	260, 322, 405, 1139
NspI	RCATGY	4 cut(s)	236, 261, 403, 554
NspV	TTCGAA	1 cut(s)	961
PciI	ACATGT	2 cut(s)	399, 550
PciSI	GCTCTTC	1 cut(s)	1060
PctI	GAATGC	4 cut(s)	382, 465, 619, 853
PdmI	GAANNNNTTC	1 cut(s)	1156
PfeI	GAWTC	5 cut(s)	562, 895, 1040, 1214, 1241
PkrI	GCNGC	5 cut(s)	111, 256, 351, 421, 703
PleI	GAGTC	2 cut(s)	190, 1338
PpsI	GAGTC	2 cut(s)	190, 1338
PscI	ACATGT	2 cut(s)	399, 550
Psp6I	CCWGG	1 cut(s)	1364
PspGI	CCWGG	1 cut(s)	1364
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	352
RseI	CAYNNNNRTG	3 cut(s)	36, 231, 1100
SapI	GCTCTTC	1 cut(s)	1060
SaqAI	TTAA	8 cut(s)	47, 240, 432, 657, 666, 723, 1236, 1277
SatI	GCNGC	5 cut(s)	110, 255, 350, 420, 702
Sau3AI	GATC	7 cut(s)	133, 205, 271, 537, 752, 904, 1321
SchI	GAGTC	2 cut(s)	190, 1338
ScrFI	CCNGG	2 cut(s)	692, 1366
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	4 cut(s)	285, 406, 688, 1005
SfcI	CTRYAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	961
SmiMI	CAYNNNNRTG	3 cut(s)	36, 231, 1100
SsiI	CCGC	2 cut(s)	557, 1289
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	690, 1364
StyI	CCWWGG	2 cut(s)	508, 1101
TaaI	ACNGT	3 cut(s)	476, 613, 1082
TaiI	ACGT	2 cut(s)	375, 1052
TaqI	TCGA	1 cut(s)	961
TfiI	GAWTC	5 cut(s)	562, 895, 1040, 1214, 1241
Tru1I	TTAA	8 cut(s)	47, 240, 432, 657, 666, 723, 1236, 1277
Tru9I	TTAA	8 cut(s)	47, 240, 432, 657, 666, 723, 1236, 1277
TscAI	CASTG	3 cut(s)	88, 823, 1072
TseFI	GTSAC	4 cut(s)	260, 322, 405, 1139
TseI	GCWGC	5 cut(s)	109, 254, 349, 419, 701
Tsp45I	GTSAC	4 cut(s)	260, 322, 405, 1139
TspDTI	ATGAA	6 cut(s)	323, 402, 503, 689, 846, 900
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	3 cut(s)	88, 823, 1072
XapI	RAATTY	5 cut(s)	93, 118, 735, 1172, 1273
XceI	RCATGY	4 cut(s)	236, 261, 403, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	1156
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.