Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G76280 AT1G76280 AT1G76280 AT1G76280 AT1G76280 |
| fragaria_vesca | FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 |
| malus_domestica | MD08G1002500.v1.1 |
| prunus_persica | Prupe.2G013700_v2.0.a1 Prupe.2G013700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0270441 RchiOBHm_Chr6g0304231 |
| rosa_laevigata | RLG00000011004 RLG00000013792 RLG00000035378 |
| rosa_multiflora | Rmu_sc0009479.1_g000010 Rmu_ssc0000218.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00163950 Rroxscaffold_7G00197930 |
| rosa_rugosa | Rorug05G0331600 Rorug05G0331700 Rorug06G0329000 |
| rosa_samantha | Rh5AG395800 Rh6AG173300 Rh6AG442800 Rh6BG177200 Rh6BG459900 Rh6CG173000 Rh6CG455200 Rh6DG165400 Rh6DG442200 |
| rosa_wichuraiana | Rw0G006810 Rw5G037260 Rw6G014750 Rw6G038390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1817 |
| AatII | GACGTC | 1 cut(s) | 258 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1010 |
| AccI | GTMKAC | 1 cut(s) | 486 |
| AciI | CCGC | 4 cut(s) | 953, 1007, 1423, 1688 |
| AclWI | GGATC | 5 cut(s) | 305, 963, 1344, 1410, 1663 |
| AcoI | YGGCCR | 2 cut(s) | 15, 937 |
| AcsI | RAATTY | 5 cut(s) | 166, 442, 928, 1224, 1249 |
| AcyI | GRCGYC | 1 cut(s) | 255 |
| AfaI | GTAC | 3 cut(s) | 293, 511, 1033 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1010, 1202 |
| AflIII | ACRYGT | 3 cut(s) | 481, 1530, 1681 |
| AhlI | ACTAGT | 1 cut(s) | 965 |
| AjiI | CACGTC | 1 cut(s) | 303 |
| AjnI | CCWGG | 3 cut(s) | 17, 243, 1107 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 869, 901 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 891, 923 |
| Alw26I | GTCTC | 3 cut(s) | 82, 1048, 1319 |
| AlwI | GGATC | 5 cut(s) | 305, 963, 1344, 1410, 1663 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 921 |
| AoxI | GGCC | 4 cut(s) | 15, 241, 937, 1105 |
| ApeKI | GCWGC | 4 cut(s) | 1240, 1385, 1480, 1550 |
| ApoI | RAATTY | 5 cut(s) | 166, 442, 928, 1224, 1249 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 790 |
| AspLEI | GCGC | 2 cut(s) | 33, 385 |
| AsuHPI | GGTGA | 1 cut(s) | 297 |
| AsuNHI | GCTAGC | 1 cut(s) | 1429 |
| BalI | TGGCCA | 2 cut(s) | 17, 939 |
| BbvI | GCAGC | 4 cut(s) | 1252, 1397, 1492, 1537 |
| BccI | CCATC | 5 cut(s) | 550, 929, 1004, 1166, 1213 |
| BceAI | ACGGC | 1 cut(s) | 1403 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 151, 185 |
| BciT130I | CCWGG | 3 cut(s) | 19, 245, 1109 |
| BciVI | GTATCC | 1 cut(s) | 407 |
| BcoDI | GTCTC | 3 cut(s) | 82, 1048, 1319 |
| BcuI | ACTAGT | 1 cut(s) | 965 |
| BfaI | CTAG | 3 cut(s) | 239, 966, 1430 |
| BfmI | CTRYAG | 5 cut(s) | 287, 636, 673, 1127, 1569 |
| BfuI | GTATCC | 1 cut(s) | 407 |
| BisI | GCNGC | 4 cut(s) | 1241, 1386, 1481, 1551 |
| BlpI | GCTNAGC | 1 cut(s) | 1113 |
| BlsI | GCNGC | 4 cut(s) | 1242, 1387, 1482, 1552 |
| BmcAI | AGTACT | 2 cut(s) | 293, 1033 |
| Bme1390I | CCNGG | 3 cut(s) | 19, 245, 1109 |
| BmgBI | CACGTC | 1 cut(s) | 303 |
| BmrFI | CCNGG | 3 cut(s) | 19, 245, 1109 |
| BmsI | GCATC | 3 cut(s) | 1122, 1416, 1537 |
| BmtI | GCTAGC | 1 cut(s) | 1433 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1113 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| BsaHI | GRCGYC | 1 cut(s) | 255 |
| BsaJI | CCNNGG | 3 cut(s) | 64, 244, 1639 |
| BsaWI | WCCGGW | 1 cut(s) | 472 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1010, 1202 |
| Bse1I | ACTGG | 2 cut(s) | 96, 127 |
| Bse3DI | GCAATG | 3 cut(s) | 26, 36, 752 |
| BseBI | CCWGG | 3 cut(s) | 19, 245, 1109 |
| BseDI | CCNNGG | 3 cut(s) | 64, 244, 1639 |
| BseGI | GGATG | 7 cut(s) | 352, 940, 1015, 1224, 1357, 1431, 1659 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1010, 1202 |
| BseMI | GCAATG | 3 cut(s) | 26, 36, 752 |
| BseMII | CTCAG | 4 cut(s) | 75, 671, 1104, 1314 |
| BseNI | ACTGG | 2 cut(s) | 96, 127 |
| BseRI | GAGGAG | 2 cut(s) | 437, 905 |
| BseXI | GCAGC | 4 cut(s) | 1252, 1397, 1492, 1537 |
| BsgI | GTGCAG | 1 cut(s) | 1107 |
| BshFI | GGCC | 4 cut(s) | 17, 243, 939, 1107 |
| BsiSI | CCGG | 1 cut(s) | 473 |
| BslFI | GGGAC | 1 cut(s) | 893 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1010, 1202 |
| BsmAI | GTCTC | 3 cut(s) | 82, 1048, 1319 |
| BsmBI | CGTCTC | 1 cut(s) | 1048 |
| BsmFI | GGGAC | 1 cut(s) | 893 |
| BsmI | GAATGC | 3 cut(s) | 1513, 1596, 1750 |
| BsnI | GGCC | 4 cut(s) | 17, 243, 939, 1107 |
| Bsp143I | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1113 |
| Bsp19I | CCATGG | 1 cut(s) | 64 |
| BspACI | CCGC | 4 cut(s) | 953, 1007, 1423, 1688 |
| BspANI | GGCC | 4 cut(s) | 17, 243, 939, 1107 |
| BspCNI | CTCAG | 4 cut(s) | 76, 672, 1105, 1315 |
| BspOI | GCTAGC | 1 cut(s) | 1433 |
| BspPI | GGATC | 5 cut(s) | 305, 963, 1344, 1410, 1663 |
| BsrDI | GCAATG | 3 cut(s) | 26, 36, 752 |
| BsrI | ACTGG | 2 cut(s) | 96, 127 |
| BssECI | CCNNGG | 3 cut(s) | 64, 244, 1639 |
| BssMI | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| BssNI | GRCGYC | 1 cut(s) | 255 |
| BssT1I | CCWWGG | 2 cut(s) | 64, 1639 |
| Bst2UI | CCWGG | 3 cut(s) | 19, 245, 1109 |
| Bst4CI | ACNGT | 7 cut(s) | 291, 296, 677, 860, 903, 1607, 1744 |
| Bst6I | CTCTTC | 1 cut(s) | 1515 |
| BstACI | GRCGYC | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 3 cut(s) | 612, 745, 1431 |
| BstDEI | CTNAG | 6 cut(s) | 84, 680, 993, 1113, 1177, 1323 |
| BstDSI | CCRYGG | 1 cut(s) | 64 |
| BstF5I | GGATG | 7 cut(s) | 352, 940, 1015, 1224, 1357, 1431, 1659 |
| BstHHI | GCGC | 2 cut(s) | 33, 385 |
| BstKTI | GATC | 6 cut(s) | 313, 958, 1267, 1339, 1405, 1671 |
| BstMAI | GTCTC | 3 cut(s) | 82, 1048, 1319 |
| BstMBI | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 607, 1373, 1382, 1643 |
| BstNI | CCWGG | 3 cut(s) | 19, 245, 1109 |
| BstNSI | RCATGY | 6 cut(s) | 485, 747, 1367, 1392, 1534, 1685 |
| BstSCI | CCNGG | 3 cut(s) | 17, 243, 1107 |
| BstSFI | CTRYAG | 5 cut(s) | 287, 636, 673, 1127, 1569 |
| BstV1I | GCAGC | 4 cut(s) | 1252, 1397, 1492, 1537 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1467 |
| BsuI | GTATCC | 1 cut(s) | 407 |
| BsuRI | GGCC | 4 cut(s) | 17, 243, 939, 1107 |
| BtgI | CCRYGG | 1 cut(s) | 64 |
| BtrI | CACGTC | 1 cut(s) | 303 |
| BtsCI | GGATG | 7 cut(s) | 352, 940, 1015, 1224, 1357, 1431, 1659 |
| BtsI | GCAGTG | 2 cut(s) | 596, 1219 |
| BtsIMutI | CAGTG | 3 cut(s) | 548, 596, 1219 |
| Cac8I | GCNNGC | 3 cut(s) | 612, 745, 1431 |
| CaiI | CAGNNNCTG | 1 cut(s) | 921 |
| CfoI | GCGC | 2 cut(s) | 33, 385 |
| Csp6I | GTAC | 3 cut(s) | 292, 510, 1032 |
| CviQI | GTAC | 3 cut(s) | 292, 510, 1032 |
| DdeI | CTNAG | 6 cut(s) | 84, 680, 993, 1113, 1177, 1323 |
| DpnI | GATC | 6 cut(s) | 312, 957, 1266, 1338, 1404, 1670 |
| DpnII | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| DraI | TTTAAA | 1 cut(s) | 735 |
| EaeI | YGGCCR | 2 cut(s) | 15, 937 |
| Eam1104I | CTCTTC | 1 cut(s) | 1515 |
| EarI | CTCTTC | 1 cut(s) | 1515 |
| EciI | GGCGGA | 1 cut(s) | 1703 |
| Eco130I | CCWWGG | 2 cut(s) | 64, 1639 |
| EcoRII | CCWGG | 3 cut(s) | 17, 243, 1107 |
| EcoT14I | CCWWGG | 2 cut(s) | 64, 1639 |
| ErhI | CCWWGG | 2 cut(s) | 64, 1639 |
| Esp3I | CGTCTC | 1 cut(s) | 1048 |
| FaqI | GGGAC | 1 cut(s) | 893 |
| FauNDI | CATATG | 4 cut(s) | 592, 1261, 1474, 1516 |
| FblI | GTMKAC | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 4 cut(s) | 1241, 1386, 1481, 1551 |
| FokI | GGATG | 7 cut(s) | 359, 947, 1022, 1231, 1344, 1438, 1666 |
| Fsp4HI | GCNGC | 4 cut(s) | 1241, 1386, 1481, 1551 |
| FspBI | CTAG | 3 cut(s) | 239, 966, 1430 |
| GlaI | GCGC | 2 cut(s) | 32, 384 |
| GluI | GCNGC | 4 cut(s) | 1241, 1386, 1481, 1551 |
| HaeIII | GGCC | 4 cut(s) | 17, 243, 939, 1107 |
| HapII | CCGG | 1 cut(s) | 473 |
| HhaI | GCGC | 2 cut(s) | 33, 385 |
| Hin1I | GRCGYC | 1 cut(s) | 255 |
| Hin6I | GCGC | 2 cut(s) | 31, 383 |
| HinP1I | GCGC | 2 cut(s) | 31, 383 |
| HindIII | AAGCTT | 3 cut(s) | 330, 504, 608 |
| HinfI | GANTC | 6 cut(s) | 22, 44, 152, 235, 1327, 1693 |
| HpaII | CCGG | 1 cut(s) | 473 |
| HphI | GGTGA | 1 cut(s) | 297 |
| Hpy166II | GTNNAC | 2 cut(s) | 487, 1065 |
| Hpy188I | TCNGA | 5 cut(s) | 162, 195, 366, 681, 1184 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 831, 915, 1066, 1196 |
| Hpy8I | GTNNAC | 2 cut(s) | 487, 1065 |
| HpyAV | CCTTC | 3 cut(s) | 649, 921, 1643 |
| HpyCH4III | ACNGT | 7 cut(s) | 291, 296, 677, 860, 903, 1607, 1744 |
| HpyCH4IV | ACGT | 3 cut(s) | 255, 302, 1057 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 607, 1373, 1382, 1643 |
| HpyF3I | CTNAG | 6 cut(s) | 84, 680, 993, 1113, 1177, 1323 |
| HpySE526I | ACGT | 3 cut(s) | 255, 302, 1057 |
| Hsp92I | GRCGYC | 1 cut(s) | 255 |
| HspAI | GCGC | 2 cut(s) | 31, 383 |
| Kzo9I | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| LmnI | GCTCC | 6 cut(s) | 38, 146, 263, 559, 1045, 1643 |
| Lsp1109I | GCAGC | 4 cut(s) | 1252, 1397, 1492, 1537 |
| LweI | GCATC | 3 cut(s) | 1122, 1416, 1537 |
| MaeI | CTAG | 3 cut(s) | 239, 966, 1430 |
| MaeII | ACGT | 3 cut(s) | 255, 302, 1057 |
| MaeIII | GTNAC | 5 cut(s) | 303, 586, 1391, 1453, 1536 |
| MalI | GATC | 6 cut(s) | 312, 957, 1266, 1338, 1404, 1670 |
| MboI | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| MboII | GAAGA | 6 cut(s) | 84, 218, 589, 819, 886, 1532 |
| MfeI | CAATTG | 1 cut(s) | 1188 |
| MlsI | TGGCCA | 2 cut(s) | 17, 939 |
| MluNI | TGGCCA | 2 cut(s) | 17, 939 |
| MlyI | GAGTC | 2 cut(s) | 244, 1321 |
| Mox20I | TGGCCA | 2 cut(s) | 17, 939 |
| MroXI | GAANNNNTTC | 1 cut(s) | 790 |
| MscI | TGGCCA | 2 cut(s) | 17, 939 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1167, 1362 |
| Msp20I | TGGCCA | 2 cut(s) | 17, 939 |
| MspA1I | CMGCKG | 2 cut(s) | 1007, 1483 |
| MspI | CCGG | 1 cut(s) | 473 |
| MspR9I | CCNGG | 3 cut(s) | 19, 245, 1109 |
| MunI | CAATTG | 1 cut(s) | 1188 |
| Mva1269I | GAATGC | 3 cut(s) | 1513, 1596, 1750 |
| MvaI | CCWGG | 3 cut(s) | 19, 245, 1109 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 607, 1373, 1382, 1643 |
| NcoI | CCATGG | 1 cut(s) | 64 |
| NdeI | CATATG | 4 cut(s) | 592, 1261, 1474, 1516 |
| NdeII | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| NheI | GCTAGC | 1 cut(s) | 1429 |
| NmuCI | GTSAC | 4 cut(s) | 303, 1391, 1453, 1536 |
| NspI | RCATGY | 6 cut(s) | 485, 747, 1367, 1392, 1534, 1685 |
| PaeI | GCATGC | 1 cut(s) | 747 |
| PciI | ACATGT | 3 cut(s) | 481, 1530, 1681 |
| PctI | GAATGC | 3 cut(s) | 1513, 1596, 1750 |
| PdmI | GAANNNNTTC | 1 cut(s) | 790 |
| PfeI | GAWTC | 4 cut(s) | 22, 44, 152, 1693 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1010 |
| PkrI | GCNGC | 4 cut(s) | 1242, 1387, 1482, 1552 |
| PleI | GAGTC | 2 cut(s) | 243, 1321 |
| PpsI | GAGTC | 2 cut(s) | 243, 1321 |
| PscI | ACATGT | 3 cut(s) | 481, 1530, 1681 |
| PsiI | TTATAA | 1 cut(s) | 1817 |
| Psp6I | CCWGG | 3 cut(s) | 17, 243, 1107 |
| PspGI | CCWGG | 3 cut(s) | 17, 243, 1107 |
| PstNI | CAGNNNCTG | 1 cut(s) | 921 |
| PvuII | CAGCTG | 1 cut(s) | 1483 |
| RsaI | GTAC | 3 cut(s) | 293, 511, 1033 |
| RsaNI | GTAC | 3 cut(s) | 292, 510, 1032 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1167, 1362 |
| SatI | GCNGC | 4 cut(s) | 1241, 1386, 1481, 1551 |
| Sau3AI | GATC | 6 cut(s) | 310, 955, 1264, 1336, 1402, 1668 |
| ScaI | AGTACT | 2 cut(s) | 293, 1033 |
| SchI | GAGTC | 2 cut(s) | 244, 1321 |
| ScrFI | CCNGG | 3 cut(s) | 19, 245, 1109 |
| SfaNI | GCATC | 3 cut(s) | 1122, 1416, 1537 |
| SfcI | CTRYAG | 5 cut(s) | 287, 636, 673, 1127, 1569 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1167, 1362 |
| SmlI | CTYRAG | 1 cut(s) | 605 |
| SmoI | CTYRAG | 1 cut(s) | 605 |
| SpeI | ACTAGT | 1 cut(s) | 965 |
| SphI | GCATGC | 1 cut(s) | 747 |
| SsiI | CCGC | 4 cut(s) | 953, 1007, 1423, 1688 |
| SspI | AATATT | 1 cut(s) | 1021 |
| SspMI | CTAG | 3 cut(s) | 239, 966, 1430 |
| StyD4I | CCNGG | 3 cut(s) | 17, 243, 1107 |
| StyI | CCWWGG | 2 cut(s) | 64, 1639 |
| TaaI | ACNGT | 7 cut(s) | 291, 296, 677, 860, 903, 1607, 1744 |
| TaiI | ACGT | 3 cut(s) | 258, 305, 1060 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TatI | WGTACW | 2 cut(s) | 291, 1031 |
| TfiI | GAWTC | 4 cut(s) | 22, 44, 152, 1693 |
| TscAI | CASTG | 3 cut(s) | 548, 603, 1219 |
| TseFI | GTSAC | 4 cut(s) | 303, 1391, 1453, 1536 |
| TseI | GCWGC | 4 cut(s) | 1240, 1385, 1480, 1550 |
| Tsp45I | GTSAC | 4 cut(s) | 303, 1391, 1453, 1536 |
| TspDTI | ATGAA | 7 cut(s) | 179, 597, 660, 912, 1454, 1533, 1634 |
| TspGWI | ACGGA | 1 cut(s) | 1573 |
| TspRI | CASTG | 3 cut(s) | 548, 603, 1219 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1010 |
| XapI | RAATTY | 5 cut(s) | 166, 442, 928, 1224, 1249 |
| XceI | RCATGY | 6 cut(s) | 485, 747, 1367, 1392, 1534, 1685 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 544, 1169 |
| XmiI | GTMKAC | 1 cut(s) | 486 |
| XmnI | GAANNNNTTC | 1 cut(s) | 790 |
| XspI | CTAG | 3 cut(s) | 239, 966, 1430 |
| ZraI | GACGTC | 1 cut(s) | 256 |
| ZrmI | AGTACT | 2 cut(s) | 293, 1033 |