Rh6CG455200

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
63074880 .. 63081274
6395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG455200.1

Sequence Viewer

Length: 1830 bp
ATGCACAGACCTCTGGCCAGGATTCCATTGCGCTCCATTGCAGAATCATTTTCACACCTCCACCATGGACGAAGAATTGTTGCTGAGAGACTGGACTATTCTCAAACTCTTACTATTTCAACTGGTCGAGATGTTTTATGGAATGGAGCAGAATCAACTCCGATGAATTTGCAGATACAAATTGTTAAGGCTCTGAAATTGGGTAAAAGAGGCGAAGCCTCCAATCTTCTTTTGAGTCTAGGCCAGGGAAATGACGTCAAAGGAGCTGATGATTTCGTGCATATTCTACAGTACTGTGCCACGTCACCTGATCCTTTGTTTGTCATGGAAGCTTGGACAATAATGGATGAGAAAGAGATTAGTCTGAATAGCCTTTGCTCTGCGCTTATGGTGGAAGCTCTATGTAATGGAGGATACTTGGAGGAGGCATTAAAATTGATAAATTTTCTTAAAGAAAGTCATGGTATCTATCCGGTTCTACATGTCTACAACACTTTTTTGAAAGCTTGTACCAAAATGCAAAGTATGGTTTATGCCAATCAGTGTTTGGAATTGATGGAGCGACAAAAGGTGGGGAAGAATGAAGTTACATATGCACTGCTTCTCAAGCTTGCAGTTTGGCAACAAAACCTGTCTGTAGCCCATGAACTTTGGAAGGACTATATCAAACACTACAGTCTGAGCATTATCCCTCTGCAAAAGTTTCTTTTGTCCTTTAGTAAGTTGGGAGATTTAAAATCTGCATGCAAGACATTGCAATATATGGTGGCTTTAGTCATCAGGGGAAAGGCTTCTGTTAATAAATCTATTAAGGGAAAGTTGTATTCTTCAAGATTGGACATTCCTATACCTTTGAACTGTGAATTAGGCTTGAAGAAACTTAATTTGGAGGAGAATGAACAGTCTGTCCCTTCCAGATACTGCGAGAATTTGGATGGCCATGTTGTTAGTGCGGATCAATGCACTAGTTTTGGCTTGGGTTTTGGAGAAACTAAGAGTGTTCCAGCGGATGGTCTTAATATTGATATAAGTACTCCTGTTATGGAGCTTTTGAGACGTTCGTTCACGAACTTGATATATGCTTGTGCAGAATTAAGAAATGGTGGCCTGGCTGAGCAGTTAGTCCTACAGATGCAAAAATTGGGGTTTCAAATAAATAGCCATGTGTATGATGGCTTAGTCAGAGCAATTGTTCCAGAAAGAGGTTTCAGCAGTGGGATGGAAATTTTGAAAAGTATGCAGCAGAGAAATTTGAAGCCATATGATCGCACTCTTGCAACCCTTTCAATAGGTTGTAGCAAGGCATTAGAATTGGGTTTAGCTGAGACTCTGCTGGATCAAATATCTGTGTATTCACATCCACATGCTTTTAATGCTTTTCTTGCAGCATGTGACATTAGGGATCAACCTGAAAATGCCGTGCGGATGCTAGCTAAAATGAAACATCTACAAGTCACGCCAAATATATGGACATATGAGCAGCTGTTTTCCTTATTTGGTAATGTGAATGCCCCATATGAAGAGGGCAACATGTTGTCACAGGTAGATGCTGCTAAACGGATTAAAGCTATAGAAATGGATATGGCGAACTATGGCATTCAGCACAGTTTTGTGTCAATGAATAACTTGCTGAAAGCCCTTGGAGCAGAAGGGATGACGAGAGAGCTGATCCATTATTTACATGTGGCGGAGAATCTTTTTTGTCGTAATCACATTTATCTGGGAACACCTATCTATAATACGGTGTTGCATTCACTTGTTGAGAGTGAGGAAGTAAGTGTTCAAACACCATTGTTTTCCCTTTCTTTTGCAATTATAATGGAGTTTTGA

Protein Analysis

609

Amino Acids

68.29

Weight (kDa)

6.68

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1817
AatII GACGTC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 486
AciI CCGC 4 cut(s) 953, 1007, 1423, 1688
AclWI GGATC 5 cut(s) 305, 963, 1344, 1410, 1663
AcoI YGGCCR 2 cut(s) 15, 937
AcsI RAATTY 5 cut(s) 166, 442, 928, 1224, 1249
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 293, 511, 1033
AfiI CCNNNNNNNGG 2 cut(s) 1010, 1202
AflIII ACRYGT 3 cut(s) 481, 1530, 1681
AhlI ACTAGT 1 cut(s) 965
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 3 cut(s) 17, 243, 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AloI GAACNNNNNNTCC 2 cut(s) 891, 923
Alw26I GTCTC 3 cut(s) 82, 1048, 1319
AlwI GGATC 5 cut(s) 305, 963, 1344, 1410, 1663
AlwNI CAGNNNCTG 1 cut(s) 921
AoxI GGCC 4 cut(s) 15, 241, 937, 1105
ApeKI GCWGC 4 cut(s) 1240, 1385, 1480, 1550
ApoI RAATTY 5 cut(s) 166, 442, 928, 1224, 1249
Asp700I GAANNNNTTC 1 cut(s) 790
AspLEI GCGC 2 cut(s) 33, 385
AsuHPI GGTGA 1 cut(s) 297
AsuNHI GCTAGC 1 cut(s) 1429
BalI TGGCCA 2 cut(s) 17, 939
BbvI GCAGC 4 cut(s) 1252, 1397, 1492, 1537
BccI CCATC 5 cut(s) 550, 929, 1004, 1166, 1213
BceAI ACGGC 1 cut(s) 1403
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 3 cut(s) 19, 245, 1109
BciVI GTATCC 1 cut(s) 407
BcoDI GTCTC 3 cut(s) 82, 1048, 1319
BcuI ACTAGT 1 cut(s) 965
BfaI CTAG 3 cut(s) 239, 966, 1430
BfmI CTRYAG 5 cut(s) 287, 636, 673, 1127, 1569
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 4 cut(s) 1241, 1386, 1481, 1551
BlpI GCTNAGC 1 cut(s) 1113
BlsI GCNGC 4 cut(s) 1242, 1387, 1482, 1552
BmcAI AGTACT 2 cut(s) 293, 1033
Bme1390I CCNGG 3 cut(s) 19, 245, 1109
BmgBI CACGTC 1 cut(s) 303
BmrFI CCNGG 3 cut(s) 19, 245, 1109
BmsI GCATC 3 cut(s) 1122, 1416, 1537
BmtI GCTAGC 1 cut(s) 1433
Bpu1102I GCTNAGC 1 cut(s) 1113
BpuEI CTTGAG 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 64, 244, 1639
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 2 cut(s) 1010, 1202
Bse1I ACTGG 2 cut(s) 96, 127
Bse3DI GCAATG 3 cut(s) 26, 36, 752
BseBI CCWGG 3 cut(s) 19, 245, 1109
BseDI CCNNGG 3 cut(s) 64, 244, 1639
BseGI GGATG 7 cut(s) 352, 940, 1015, 1224, 1357, 1431, 1659
BseLI CCNNNNNNNGG 2 cut(s) 1010, 1202
BseMI GCAATG 3 cut(s) 26, 36, 752
BseMII CTCAG 4 cut(s) 75, 671, 1104, 1314
BseNI ACTGG 2 cut(s) 96, 127
BseRI GAGGAG 2 cut(s) 437, 905
BseXI GCAGC 4 cut(s) 1252, 1397, 1492, 1537
BsgI GTGCAG 1 cut(s) 1107
BshFI GGCC 4 cut(s) 17, 243, 939, 1107
BsiSI CCGG 1 cut(s) 473
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 2 cut(s) 1010, 1202
BsmAI GTCTC 3 cut(s) 82, 1048, 1319
BsmBI CGTCTC 1 cut(s) 1048
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 3 cut(s) 1513, 1596, 1750
BsnI GGCC 4 cut(s) 17, 243, 939, 1107
Bsp143I GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
Bsp1720I GCTNAGC 1 cut(s) 1113
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 4 cut(s) 953, 1007, 1423, 1688
BspANI GGCC 4 cut(s) 17, 243, 939, 1107
BspCNI CTCAG 4 cut(s) 76, 672, 1105, 1315
BspOI GCTAGC 1 cut(s) 1433
BspPI GGATC 5 cut(s) 305, 963, 1344, 1410, 1663
BsrDI GCAATG 3 cut(s) 26, 36, 752
BsrI ACTGG 2 cut(s) 96, 127
BssECI CCNNGG 3 cut(s) 64, 244, 1639
BssMI GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 64, 1639
Bst2UI CCWGG 3 cut(s) 19, 245, 1109
Bst4CI ACNGT 7 cut(s) 291, 296, 677, 860, 903, 1607, 1744
Bst6I CTCTTC 1 cut(s) 1515
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 612, 745, 1431
BstDEI CTNAG 6 cut(s) 84, 680, 993, 1113, 1177, 1323
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 7 cut(s) 352, 940, 1015, 1224, 1357, 1431, 1659
BstHHI GCGC 2 cut(s) 33, 385
BstKTI GATC 6 cut(s) 313, 958, 1267, 1339, 1405, 1671
BstMAI GTCTC 3 cut(s) 82, 1048, 1319
BstMBI GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
BstMWI GCNNNNNNNGC 4 cut(s) 607, 1373, 1382, 1643
BstNI CCWGG 3 cut(s) 19, 245, 1109
BstNSI RCATGY 6 cut(s) 485, 747, 1367, 1392, 1534, 1685
BstSCI CCNGG 3 cut(s) 17, 243, 1107
BstSFI CTRYAG 5 cut(s) 287, 636, 673, 1127, 1569
BstV1I GCAGC 4 cut(s) 1252, 1397, 1492, 1537
BstXI CCANNNNNNTGG 1 cut(s) 1467
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 4 cut(s) 17, 243, 939, 1107
BtgI CCRYGG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 7 cut(s) 352, 940, 1015, 1224, 1357, 1431, 1659
BtsI GCAGTG 2 cut(s) 596, 1219
BtsIMutI CAGTG 3 cut(s) 548, 596, 1219
Cac8I GCNNGC 3 cut(s) 612, 745, 1431
CaiI CAGNNNCTG 1 cut(s) 921
CfoI GCGC 2 cut(s) 33, 385
Csp6I GTAC 3 cut(s) 292, 510, 1032
CviQI GTAC 3 cut(s) 292, 510, 1032
DdeI CTNAG 6 cut(s) 84, 680, 993, 1113, 1177, 1323
DpnI GATC 6 cut(s) 312, 957, 1266, 1338, 1404, 1670
DpnII GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
DraI TTTAAA 1 cut(s) 735
EaeI YGGCCR 2 cut(s) 15, 937
Eam1104I CTCTTC 1 cut(s) 1515
EarI CTCTTC 1 cut(s) 1515
EciI GGCGGA 1 cut(s) 1703
Eco130I CCWWGG 2 cut(s) 64, 1639
EcoRII CCWGG 3 cut(s) 17, 243, 1107
EcoT14I CCWWGG 2 cut(s) 64, 1639
ErhI CCWWGG 2 cut(s) 64, 1639
Esp3I CGTCTC 1 cut(s) 1048
FaqI GGGAC 1 cut(s) 893
FauNDI CATATG 4 cut(s) 592, 1261, 1474, 1516
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 1241, 1386, 1481, 1551
FokI GGATG 7 cut(s) 359, 947, 1022, 1231, 1344, 1438, 1666
Fsp4HI GCNGC 4 cut(s) 1241, 1386, 1481, 1551
FspBI CTAG 3 cut(s) 239, 966, 1430
GlaI GCGC 2 cut(s) 32, 384
GluI GCNGC 4 cut(s) 1241, 1386, 1481, 1551
HaeIII GGCC 4 cut(s) 17, 243, 939, 1107
HapII CCGG 1 cut(s) 473
HhaI GCGC 2 cut(s) 33, 385
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 2 cut(s) 31, 383
HinP1I GCGC 2 cut(s) 31, 383
HindIII AAGCTT 3 cut(s) 330, 504, 608
HinfI GANTC 6 cut(s) 22, 44, 152, 235, 1327, 1693
HpaII CCGG 1 cut(s) 473
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 2 cut(s) 487, 1065
Hpy188I TCNGA 5 cut(s) 162, 195, 366, 681, 1184
Hpy188III TCNNGA 5 cut(s) 128, 831, 915, 1066, 1196
Hpy8I GTNNAC 2 cut(s) 487, 1065
HpyAV CCTTC 3 cut(s) 649, 921, 1643
HpyCH4III ACNGT 7 cut(s) 291, 296, 677, 860, 903, 1607, 1744
HpyCH4IV ACGT 3 cut(s) 255, 302, 1057
HpyF10VI GCNNNNNNNGC 4 cut(s) 607, 1373, 1382, 1643
HpyF3I CTNAG 6 cut(s) 84, 680, 993, 1113, 1177, 1323
HpySE526I ACGT 3 cut(s) 255, 302, 1057
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 2 cut(s) 31, 383
Kzo9I GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
LmnI GCTCC 6 cut(s) 38, 146, 263, 559, 1045, 1643
Lsp1109I GCAGC 4 cut(s) 1252, 1397, 1492, 1537
LweI GCATC 3 cut(s) 1122, 1416, 1537
MaeI CTAG 3 cut(s) 239, 966, 1430
MaeII ACGT 3 cut(s) 255, 302, 1057
MaeIII GTNAC 5 cut(s) 303, 586, 1391, 1453, 1536
MalI GATC 6 cut(s) 312, 957, 1266, 1338, 1404, 1670
MboI GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
MboII GAAGA 6 cut(s) 84, 218, 589, 819, 886, 1532
MfeI CAATTG 1 cut(s) 1188
MlsI TGGCCA 2 cut(s) 17, 939
MluNI TGGCCA 2 cut(s) 17, 939
MlyI GAGTC 2 cut(s) 244, 1321
Mox20I TGGCCA 2 cut(s) 17, 939
MroXI GAANNNNTTC 1 cut(s) 790
MscI TGGCCA 2 cut(s) 17, 939
MslI CAYNNNNRTG 2 cut(s) 1167, 1362
Msp20I TGGCCA 2 cut(s) 17, 939
MspA1I CMGCKG 2 cut(s) 1007, 1483
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 3 cut(s) 19, 245, 1109
MunI CAATTG 1 cut(s) 1188
Mva1269I GAATGC 3 cut(s) 1513, 1596, 1750
MvaI CCWGG 3 cut(s) 19, 245, 1109
MwoI GCNNNNNNNGC 4 cut(s) 607, 1373, 1382, 1643
NcoI CCATGG 1 cut(s) 64
NdeI CATATG 4 cut(s) 592, 1261, 1474, 1516
NdeII GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
NheI GCTAGC 1 cut(s) 1429
NmuCI GTSAC 4 cut(s) 303, 1391, 1453, 1536
NspI RCATGY 6 cut(s) 485, 747, 1367, 1392, 1534, 1685
PaeI GCATGC 1 cut(s) 747
PciI ACATGT 3 cut(s) 481, 1530, 1681
PctI GAATGC 3 cut(s) 1513, 1596, 1750
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 4 cut(s) 22, 44, 152, 1693
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 4 cut(s) 1242, 1387, 1482, 1552
PleI GAGTC 2 cut(s) 243, 1321
PpsI GAGTC 2 cut(s) 243, 1321
PscI ACATGT 3 cut(s) 481, 1530, 1681
PsiI TTATAA 1 cut(s) 1817
Psp6I CCWGG 3 cut(s) 17, 243, 1107
PspGI CCWGG 3 cut(s) 17, 243, 1107
PstNI CAGNNNCTG 1 cut(s) 921
PvuII CAGCTG 1 cut(s) 1483
RsaI GTAC 3 cut(s) 293, 511, 1033
RsaNI GTAC 3 cut(s) 292, 510, 1032
RseI CAYNNNNRTG 2 cut(s) 1167, 1362
SatI GCNGC 4 cut(s) 1241, 1386, 1481, 1551
Sau3AI GATC 6 cut(s) 310, 955, 1264, 1336, 1402, 1668
ScaI AGTACT 2 cut(s) 293, 1033
SchI GAGTC 2 cut(s) 244, 1321
ScrFI CCNGG 3 cut(s) 19, 245, 1109
SfaNI GCATC 3 cut(s) 1122, 1416, 1537
SfcI CTRYAG 5 cut(s) 287, 636, 673, 1127, 1569
SmiMI CAYNNNNRTG 2 cut(s) 1167, 1362
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SpeI ACTAGT 1 cut(s) 965
SphI GCATGC 1 cut(s) 747
SsiI CCGC 4 cut(s) 953, 1007, 1423, 1688
SspI AATATT 1 cut(s) 1021
SspMI CTAG 3 cut(s) 239, 966, 1430
StyD4I CCNGG 3 cut(s) 17, 243, 1107
StyI CCWWGG 2 cut(s) 64, 1639
TaaI ACNGT 7 cut(s) 291, 296, 677, 860, 903, 1607, 1744
TaiI ACGT 3 cut(s) 258, 305, 1060
TaqI TCGA 1 cut(s) 127
TatI WGTACW 2 cut(s) 291, 1031
TfiI GAWTC 4 cut(s) 22, 44, 152, 1693
TscAI CASTG 3 cut(s) 548, 603, 1219
TseFI GTSAC 4 cut(s) 303, 1391, 1453, 1536
TseI GCWGC 4 cut(s) 1240, 1385, 1480, 1550
Tsp45I GTSAC 4 cut(s) 303, 1391, 1453, 1536
TspDTI ATGAA 7 cut(s) 179, 597, 660, 912, 1454, 1533, 1634
TspGWI ACGGA 1 cut(s) 1573
TspRI CASTG 3 cut(s) 548, 603, 1219
Van91I CCANNNNNTGG 1 cut(s) 1010
XapI RAATTY 5 cut(s) 166, 442, 928, 1224, 1249
XceI RCATGY 6 cut(s) 485, 747, 1367, 1392, 1534, 1685
XcmI CCANNNNNNNNNTGG 2 cut(s) 544, 1169
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 790
XspI CTAG 3 cut(s) 239, 966, 1430
ZraI GACGTC 1 cut(s) 256
ZrmI AGTACT 2 cut(s) 293, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.