Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001709

Physical Location & Seq

Genomic Coordinates Forward (+)

30115985 .. 30122542

Gene Structure 6558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGCACAGACCTCTAGCCAGGATTCCATTGCGCTCCATTGCAGAATCTTTTTCACACCTCCACCATGGACGAAGAATTGTTGCTGAGAGACTGGACTATTCTCGAACTCTTACTATTTCAACTGGTCGAGATGTTTTATGGAATGGAGCAGAATCAACTACGATGAATTTGCAGATACAAATTGTTAAGGCTCTGAAATTGGGTAAAAGAGGCGAAGCCTCCAATCTTCTTTTGAGTCTAGGCCAGGGAAATGACGTTAAAGGAGCTGATGATTTCTTGCATATTCTAAAGTACTGTGCCACGTCACCTGATCCTTTGTTTGTCATGGAAGCTTGGACAATAATGGATGAGAAAGAGATTAGTCTGAATAGCCTTTGCTCCGCGCTTATGGTGGAAGCTCTATGTAATGGAGGATACTTGGAGGAGGCATTAAAATTGATAAATTTTCTTAAACAAAGTCATGGTATCTATCCGGTTCTACATGTCTACAACACTTTTTTGAAAGCTTGTACCAAAATGCAAAGTATGGTTTATGCCAATCAGTGTTTGGAATTGATGGAGCGACAAAAGGTGGGGAAGAATGAAGTTACATATGCACTGCTTCTCAAGCTTGCAGTTTGGCAACAAAACCTGTCTGTAGCCCGTGAACTTTGGAAGGACTATATCAAACACTACAGTCTGAGCATTATCCCTCTGCAAAAGTTTATTTTGTCCTTTAGTAAGTTGGGAGATTTAAAATCTGCATGCAAGACATTGCAATATATGGTGGCTTTAGTCATCAGGGGAAAGGCTTCTGTTAATAAATCTATTAAGGGAAAGTTGTATTCTTCAAGATTGGACATTCCTATACCTTTGAACTGCGAATTAGGCTTGAAGGAACTTAATTTGGAGGAGAATGAACAGTCTGTCCCTTCCAGATACTGCGAGAATTTGGATGGCCATGTTGTTAGTGCGGATCAATGCACTAGTTTTGGCTTGGGTATTGGAGAAACTAAGAGTGTTCCAGCGGATGGTTTTAATATTGATATAAGTACTCCTGTTATGGAGCTTTTGAGATGTTCGTTCACGAACTTGATATATGCTTGTGCAGAATTAAGAAATGGTGGTCTCGCTGAGCAGTTAGTCCTACAGATGCAAAAATTGGGGTTTCAAATAAATAGCCATGTGTATGATGGCTTAATCAGAGCAATTGTTCCAGAAAGAGGTTTCAGCAGTGGGATGGAAATTTTGAAAAGTATGCAGCAGAGAAATTTGAAGCCATATGATCGCACTCTTGCAATCCTTTCAATAGGTTGTAGCAAGGCATTAGAATTGGGTTTAGCTGAGACTCTGCTGGATCAAATATCTGTGTATTCACATCCACATGCTTTTAATGCTTTTCTTGCAGCATGTGACATTAGGGATCAACCTGAAAATGCCGTGCGGTTGCTAGCTAAAATGAAACATCTACAAGTCACGCCAAATATATGGACATATGAGCAGCTGTTTTCCTTGTTTGGTAACGTGAATGCCCCATATGAAGAGGGCAACATGTTGTCACAGGTAGATGCTGCTAAACGGATTAAAGCTATAGAAATGGATATGGCGAACTATGGCATTCAGCACAGTTTTGTGTCAATGAATAACTTGCTGAAAGCCCTTGGAGCAGAAGGGATGACGAGAGAGCTGATCCATTATTTACATGTGGCGGAGAATCTTTTTTGTCGTAATCACATTTATCTGGGAACACCTATCTATAATACGGTGTTGCATTCACTTGTTGAGAGTGAGGAAAGCCAAATGGCAATTAAGATGTTTAAAAACATGAAGTCATGTGGTGTCCCGGCAGATGCTGCAACTTATACTATAATGATTAAGTGTTGTAAAATTCTCAGATGTTATAGATCTGCTTGTGCATTGGTTTCTATGATGTTGCGAGATGGCTTTTACCCTCTAACAATAACTTACACTGCTCTCATAAAGACTTTGTTGGAAGATGATATCATTGATGAAGCACTGAATCTTTTGGATCAAGCCAGCTCAGAAGGGAATAAACTTGATACTTTAGTTTTCAATACCATTCTTCGAAAAGCCTGTGAAAAGGAACTGATTGATGTAGTTGAGTTTCTTGTTGAGTGGATGCACCAAGAAAAAATCCGGCCTGATTCGGGGACGTGCTCTTCTGTTTTCACTGCATATACGAACTGTGGTTTTTACAGCACAGCCATGGAAGCATTGCAGGTTTTGAGTATGCGTATAATATGTGACGAAGATGGAAGCTGTTCAGAAAAGACAAAATTTGAGGACGACTATATCTTTGCTGAAGACGAAGGAGCTGAATCCCGTATAATCCTGCATTTTAAAGATTCTAAAGAGGACTTGGCTGTTGCCCTACTGAATTTAAGATGGTGCGCGGTGCTTGGCTTCCCAATTTCTTGGTTGCCTGATCAAAGCCCGTGGGCAAAAAGACTCTCAACTAACTATACTGCCAGGATAGGAGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

828

Amino Acids

92.99

Weight (kDa)

6.17

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	578 - 621	1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76280 AT1G76280 AT1G76280 AT1G76280 AT1G76280
fragaria_vesca	FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510
malus_domestica	MD08G1002500.v1.1
prunus_persica	Prupe.2G013700_v2.0.a1 Prupe.2G013700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0270441 RchiOBHm_Chr6g0304231
rosa_laevigata	RLG00000011004 RLG00000013792 RLG00000035378
rosa_multiflora	Rmu_sc0009479.1_g000010 Rmu_ssc0000218.1_g000015
rosa_roxburghii	Rroxscaffold_7G00163950 Rroxscaffold_7G00197930
rosa_rugosa	Rorug05G0331600 Rorug05G0331700 Rorug06G0329000
rosa_samantha	Rh5AG395800 Rh6AG173300 Rh6AG442800 Rh6BG177200 Rh6BG459900 Rh6CG173000 Rh6CG455200 Rh6DG165400 Rh6DG442200
rosa_wichuraiana	Rw0G006810 Rw5G037260 Rw6G014750 Rw6G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2209
AccB7I	CCANNNNNTGG	1 cut(s)	1010
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	2 cut(s)	383, 2393
AciI	CCGC	6 cut(s)	381, 953, 1007, 1423, 1688, 2393
AclWI	GGATC	6 cut(s)	305, 963, 1344, 1410, 1663, 2016
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	8 cut(s)	166, 442, 928, 1224, 1249, 1866, 2276, 2377
AcuI	CTGAAG	1 cut(s)	2322
AfaI	GTAC	3 cut(s)	293, 511, 1033
AfiI	CCNNNNNNNGG	3 cut(s)	1010, 1202, 2147
AflIII	ACRYGT	3 cut(s)	481, 1530, 1681
AhlI	ACTAGT	1 cut(s)	965
AjiI	CACGTC	2 cut(s)	303, 2154
AjnI	CCWGG	3 cut(s)	17, 243, 2468
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
Alw21I	GWGCWC	1 cut(s)	2159
Alw26I	GTCTC	3 cut(s)	82, 1112, 1319
AlwI	GGATC	6 cut(s)	305, 963, 1344, 1410, 1663, 2016
AlwNI	CAGNNNCTG	2 cut(s)	921, 1832
AoxI	GGCC	3 cut(s)	241, 937, 2138
ApeKI	GCWGC	5 cut(s)	1240, 1385, 1480, 1550, 1832
ApoI	RAATTY	8 cut(s)	166, 442, 928, 1224, 1249, 1866, 2276, 2377
ArsI	GACNNNNNNTTYG	2 cut(s)	2279, 2311
Asp700I	GAANNNNTTC	2 cut(s)	790, 2260
AspLEI	GCGC	3 cut(s)	33, 385, 2393
AsuC2I	CCSGG	1 cut(s)	1823
AsuHPI	GGTGA	1 cut(s)	297
AsuII	TTCGAA	1 cut(s)	2065
AsuNHI	GCTAGC	1 cut(s)	1429
BaeI	ACNNNNGTAYC	2 cut(s)	2031, 2064
BalI	TGGCCA	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	2310
Bbv12I	GWGCWC	1 cut(s)	2159
BbvI	GCAGC	5 cut(s)	1252, 1397, 1492, 1537, 1819
BccI	CCATC	8 cut(s)	550, 929, 1004, 1166, 1213, 1913, 2246, 2379
BceAI	ACGGC	1 cut(s)	1403
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	3 cut(s)	19, 245, 2470
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	2425
BcnI	CCSGG	1 cut(s)	1823
BcoDI	GTCTC	3 cut(s)	82, 1112, 1319
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	4 cut(s)	14, 239, 966, 1430
BfmI	CTRYAG	4 cut(s)	636, 673, 1127, 1569
BfuAI	ACCTGC	1 cut(s)	2209
BfuI	GTATCC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	1883
BisI	GCNGC	5 cut(s)	1241, 1386, 1481, 1551, 1833
BlpI	GCTNAGC	1 cut(s)	1113
BlsI	GCNGC	5 cut(s)	1242, 1387, 1482, 1552, 1834
BmcAI	AGTACT	2 cut(s)	293, 1033
Bme1390I	CCNGG	4 cut(s)	19, 245, 1823, 2470
BmgBI	CACGTC	2 cut(s)	303, 2154
BmrFI	CCNGG	4 cut(s)	19, 245, 1823, 2470
BmsI	GCATC	4 cut(s)	1122, 1537, 1819, 2109
BmtI	GCTAGC	1 cut(s)	1433
BpiI	GAAGAC	1 cut(s)	2310
Bpu1102I	GCTNAGC	1 cut(s)	1113
Bpu14I	TTCGAA	1 cut(s)	2065
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	1823
BsaI	GGTCTC	1 cut(s)	1112
BsaJI	CCNNGG	5 cut(s)	64, 244, 1639, 2205, 2435
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	3 cut(s)	1010, 1202, 2147
Bse1I	ACTGG	2 cut(s)	96, 127
Bse3DI	GCAATG	4 cut(s)	26, 36, 752, 2213
BseBI	CCWGG	3 cut(s)	19, 245, 2470
BseDI	CCNNGG	5 cut(s)	64, 244, 1639, 2205, 2435
BseGI	GGATG	7 cut(s)	352, 940, 1015, 1224, 1357, 1659, 2124
BseLI	CCNNNNNNNGG	3 cut(s)	1010, 1202, 2147
BseMI	GCAATG	4 cut(s)	26, 36, 752, 2213
BseMII	CTCAG	6 cut(s)	75, 671, 1104, 1314, 1885, 2034
BseNI	ACTGG	2 cut(s)	96, 127
BseRI	GAGGAG	2 cut(s)	437, 905
BseXI	GCAGC	5 cut(s)	1252, 1397, 1492, 1537, 1819
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	2 cut(s)	383, 2393
BshFI	GGCC	3 cut(s)	243, 939, 2140
BsiHKAI	GWGCWC	1 cut(s)	2159
BsiSI	CCGG	3 cut(s)	473, 1823, 2137
BslFI	GGGAC	3 cut(s)	893, 1805, 2164
BslI	CCNNNNNNNGG	3 cut(s)	1010, 1202, 2147
BsmAI	GTCTC	3 cut(s)	82, 1112, 1319
BsmFI	GGGAC	3 cut(s)	893, 1805, 2164
BsmI	GAATGC	3 cut(s)	1513, 1596, 1750
BsnI	GGCC	3 cut(s)	243, 939, 2140
Bso31I	GGTCTC	1 cut(s)	1112
Bsp119I	TTCGAA	1 cut(s)	2065
Bsp1286I	GDGCHC	1 cut(s)	2159
Bsp143I	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
Bsp1720I	GCTNAGC	1 cut(s)	1113
Bsp19I	CCATGG	2 cut(s)	64, 2205
BspACI	CCGC	6 cut(s)	381, 953, 1007, 1423, 1688, 2393
BspANI	GGCC	3 cut(s)	243, 939, 2140
BspCNI	CTCAG	6 cut(s)	76, 672, 1105, 1315, 1884, 2033
BspFNI	CGCG	2 cut(s)	383, 2393
BspMI	ACCTGC	1 cut(s)	2209
BspOI	GCTAGC	1 cut(s)	1433
BspPI	GGATC	6 cut(s)	305, 963, 1344, 1410, 1663, 2016
BspQI	GCTCTTC	1 cut(s)	2164
BspT104I	TTCGAA	1 cut(s)	2065
BspTNI	GGTCTC	1 cut(s)	1112
BsrDI	GCAATG	4 cut(s)	26, 36, 752, 2213
BsrI	ACTGG	2 cut(s)	96, 127
BssECI	CCNNGG	5 cut(s)	64, 244, 1639, 2205, 2435
BssMI	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
BssT1I	CCWWGG	3 cut(s)	64, 1639, 2205
Bst2UI	CCWGG	3 cut(s)	19, 245, 2470
Bst4CI	ACNGT	6 cut(s)	296, 677, 903, 1607, 1744, 2186
Bst6I	CTCTTC	2 cut(s)	1515, 2164
BstAPI	GCANNNNNTGC	1 cut(s)	1832
BstBI	TTCGAA	1 cut(s)	2065
BstC8I	GCNNGC	4 cut(s)	612, 745, 1431, 2017
BstDEI	CTNAG	7 cut(s)	84, 680, 993, 1113, 1323, 1871, 2020
BstDSI	CCRYGG	3 cut(s)	64, 2205, 2435
BstF5I	GGATG	7 cut(s)	352, 940, 1015, 1224, 1357, 1659, 2124
BstFNI	CGCG	2 cut(s)	383, 2393
BstHHI	GCGC	3 cut(s)	33, 385, 2393
BstKTI	GATC	9 cut(s)	313, 958, 1267, 1339, 1405, 1671, 1886, 2011, 2428
BstMAI	GTCTC	3 cut(s)	82, 1112, 1319
BstMBI	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
BstMWI	GCNNNNNNNGC	7 cut(s)	607, 867, 1373, 1382, 1643, 1832, 2210
BstNI	CCWGG	3 cut(s)	19, 245, 2470
BstNSI	RCATGY	6 cut(s)	485, 747, 1367, 1392, 1534, 1685
BstSCI	CCNGG	4 cut(s)	17, 243, 1821, 2468
BstSFI	CTRYAG	4 cut(s)	636, 673, 1127, 1569
BstUI	CGCG	2 cut(s)	383, 2393
BstV1I	GCAGC	5 cut(s)	1252, 1397, 1492, 1537, 1819
BstV2I	GAAGAC	1 cut(s)	2310
BstX2I	RGATCY	1 cut(s)	1883
BstXI	CCANNNNNNTGG	2 cut(s)	1467, 2415
BstYI	RGATCY	1 cut(s)	1883
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	243, 939, 2140
BtgI	CCRYGG	3 cut(s)	64, 2205, 2435
BtrI	CACGTC	2 cut(s)	303, 2154
BtsCI	GGATG	7 cut(s)	352, 940, 1015, 1224, 1357, 1659, 2124
BtsI	GCAGTG	4 cut(s)	596, 1219, 1947, 2169
BtsIMutI	CAGTG	6 cut(s)	548, 596, 1219, 1947, 1994, 2169
BveI	ACCTGC	1 cut(s)	2209
Cac8I	GCNNGC	4 cut(s)	612, 745, 1431, 2017
CaiI	CAGNNNCTG	2 cut(s)	921, 1832
CfoI	GCGC	3 cut(s)	33, 385, 2393
Csp6I	GTAC	3 cut(s)	292, 510, 1032
CspCI	CAANNNNNGTGG	2 cut(s)	2417, 2452
CviQI	GTAC	3 cut(s)	292, 510, 1032
DdeI	CTNAG	7 cut(s)	84, 680, 993, 1113, 1323, 1871, 2020
DpnI	GATC	9 cut(s)	312, 957, 1266, 1338, 1404, 1670, 1885, 2010, 2427
DpnII	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
DraI	TTTAAA	3 cut(s)	735, 1798, 2341
EaeI	YGGCCR	1 cut(s)	937
Eam1104I	CTCTTC	2 cut(s)	1515, 2164
EarI	CTCTTC	2 cut(s)	1515, 2164
EciI	GGCGGA	1 cut(s)	1703
Eco130I	CCWWGG	3 cut(s)	64, 1639, 2205
Eco31I	GGTCTC	1 cut(s)	1112
Eco32I	GATATC	1 cut(s)	1981
Eco57I	CTGAAG	1 cut(s)	2322
EcoRII	CCWGG	3 cut(s)	17, 243, 2468
EcoRV	GATATC	1 cut(s)	1981
EcoT14I	CCWWGG	3 cut(s)	64, 1639, 2205
ErhI	CCWWGG	3 cut(s)	64, 1639, 2205
FaqI	GGGAC	3 cut(s)	893, 1805, 2164
FauNDI	CATATG	4 cut(s)	592, 1261, 1474, 1516
FbaI	TGATCA	1 cut(s)	2425
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	1241, 1386, 1481, 1551, 1833
FokI	GGATG	7 cut(s)	359, 947, 1022, 1231, 1344, 1666, 2131
Fsp4HI	GCNGC	5 cut(s)	1241, 1386, 1481, 1551, 1833
FspBI	CTAG	4 cut(s)	14, 239, 966, 1430
GlaI	GCGC	3 cut(s)	32, 384, 2392
GluI	GCNGC	5 cut(s)	1241, 1386, 1481, 1551, 1833
HaeIII	GGCC	3 cut(s)	243, 939, 2140
HapII	CCGG	3 cut(s)	473, 1823, 2137
HhaI	GCGC	3 cut(s)	33, 385, 2393
Hin6I	GCGC	3 cut(s)	31, 383, 2391
HinP1I	GCGC	3 cut(s)	31, 383, 2391
HindIII	AAGCTT	3 cut(s)	330, 504, 608
HpaII	CCGG	3 cut(s)	473, 1823, 2137
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	487, 647, 1065
Hpy188I	TCNGA	7 cut(s)	195, 366, 681, 1184, 1874, 2023, 2266
Hpy188III	TCNNGA	6 cut(s)	102, 128, 831, 915, 1066, 1196
Hpy8I	GTNNAC	3 cut(s)	487, 647, 1065
HpyAV	CCTTC	6 cut(s)	649, 868, 921, 1643, 2018, 2303
HpyCH4III	ACNGT	6 cut(s)	296, 677, 903, 1607, 1744, 2186
HpyCH4IV	ACGT	4 cut(s)	255, 302, 1503, 2153
HpyF10VI	GCNNNNNNNGC	7 cut(s)	607, 867, 1373, 1382, 1643, 1832, 2210
HpyF3I	CTNAG	7 cut(s)	84, 680, 993, 1113, 1323, 1871, 2020
HpySE526I	ACGT	4 cut(s)	255, 302, 1503, 2153
HspAI	GCGC	3 cut(s)	31, 383, 2391
Ksp22I	TGATCA	1 cut(s)	2425
Kzo9I	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
LguI	GCTCTTC	1 cut(s)	2164
LmnI	GCTCC	9 cut(s)	38, 146, 263, 383, 559, 1045, 1643, 2312, 2477
Lsp1109I	GCAGC	5 cut(s)	1252, 1397, 1492, 1537, 1819
LweI	GCATC	4 cut(s)	1122, 1537, 1819, 2109
MaeI	CTAG	4 cut(s)	14, 239, 966, 1430
MaeII	ACGT	4 cut(s)	255, 302, 1503, 2153
MaeIII	GTNAC	7 cut(s)	303, 586, 1391, 1453, 1499, 1536, 2243
MalI	GATC	9 cut(s)	312, 957, 1266, 1338, 1404, 1670, 1885, 2010, 2427
MboI	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
MfeI	CAATTG	1 cut(s)	1188
MflI	RGATCY	1 cut(s)	1883
MhlI	GDGCHC	1 cut(s)	2159
MlsI	TGGCCA	1 cut(s)	939
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	3 cut(s)	244, 1321, 2442
MmeI	TCCRAC	1 cut(s)	1950
Mox20I	TGGCCA	1 cut(s)	939
MroXI	GAANNNNTTC	2 cut(s)	790, 2260
MscI	TGGCCA	1 cut(s)	939
MslI	CAYNNNNRTG	3 cut(s)	1167, 1362, 2204
Msp20I	TGGCCA	1 cut(s)	939
MspA1I	CMGCKG	2 cut(s)	1007, 1483
MspI	CCGG	3 cut(s)	473, 1823, 2137
MspR9I	CCNGG	4 cut(s)	19, 245, 1823, 2470
MunI	CAATTG	1 cut(s)	1188
Mva1269I	GAATGC	3 cut(s)	1513, 1596, 1750
MvaI	CCWGG	3 cut(s)	19, 245, 2470
MvnI	CGCG	2 cut(s)	383, 2393
MwoI	GCNNNNNNNGC	7 cut(s)	607, 867, 1373, 1382, 1643, 1832, 2210
NciI	CCSGG	1 cut(s)	1823
NcoI	CCATGG	2 cut(s)	64, 2205
NdeI	CATATG	4 cut(s)	592, 1261, 1474, 1516
NdeII	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
NheI	GCTAGC	1 cut(s)	1429
NmuCI	GTSAC	5 cut(s)	303, 1391, 1453, 1536, 2243
NspI	RCATGY	6 cut(s)	485, 747, 1367, 1392, 1534, 1685
NspV	TTCGAA	1 cut(s)	2065
PaeI	GCATGC	1 cut(s)	747
PciI	ACATGT	3 cut(s)	481, 1530, 1681
PciSI	GCTCTTC	1 cut(s)	2164
PctI	GAATGC	3 cut(s)	1513, 1596, 1750
PdmI	GAANNNNTTC	2 cut(s)	790, 2260
PfeI	GAWTC	8 cut(s)	22, 44, 152, 1693, 1999, 2144, 2318, 2345
PflMI	CCANNNNNTGG	1 cut(s)	1010
PkrI	GCNGC	5 cut(s)	1242, 1387, 1482, 1552, 1834
PleI	GAGTC	3 cut(s)	243, 1321, 2442
PpsI	GAGTC	3 cut(s)	243, 1321, 2442
PscI	ACATGT	3 cut(s)	481, 1530, 1681
Psp6I	CCWGG	3 cut(s)	17, 243, 2468
PspGI	CCWGG	3 cut(s)	17, 243, 2468
PstNI	CAGNNNCTG	2 cut(s)	921, 1832
PsuI	RGATCY	1 cut(s)	1883
PvuII	CAGCTG	1 cut(s)	1483
RsaI	GTAC	3 cut(s)	293, 511, 1033
RsaNI	GTAC	3 cut(s)	292, 510, 1032
RseI	CAYNNNNRTG	3 cut(s)	1167, 1362, 2204
SapI	GCTCTTC	1 cut(s)	2164
SatI	GCNGC	5 cut(s)	1241, 1386, 1481, 1551, 1833
Sau3AI	GATC	9 cut(s)	310, 955, 1264, 1336, 1402, 1668, 1883, 2008, 2425
ScaI	AGTACT	2 cut(s)	293, 1033
SchI	GAGTC	3 cut(s)	244, 1321, 2442
ScrFI	CCNGG	4 cut(s)	19, 245, 1823, 2470
SduI	GDGCHC	1 cut(s)	2159
SfaNI	GCATC	4 cut(s)	1122, 1537, 1819, 2109
SfcI	CTRYAG	4 cut(s)	636, 673, 1127, 1569
SfuI	TTCGAA	1 cut(s)	2065
SmiMI	CAYNNNNRTG	3 cut(s)	1167, 1362, 2204
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	965
SphI	GCATGC	1 cut(s)	747
SsiI	CCGC	6 cut(s)	381, 953, 1007, 1423, 1688, 2393
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	4 cut(s)	14, 239, 966, 1430
StyD4I	CCNGG	4 cut(s)	17, 243, 1821, 2468
StyI	CCWWGG	3 cut(s)	64, 1639, 2205
TaaI	ACNGT	6 cut(s)	296, 677, 903, 1607, 1744, 2186
TaiI	ACGT	4 cut(s)	258, 305, 1506, 2156
TaqI	TCGA	3 cut(s)	103, 127, 2065
TatI	WGTACW	2 cut(s)	291, 1031
TfiI	GAWTC	8 cut(s)	22, 44, 152, 1693, 1999, 2144, 2318, 2345
TscAI	CASTG	6 cut(s)	548, 603, 1219, 1954, 2001, 2176
TseFI	GTSAC	5 cut(s)	303, 1391, 1453, 1536, 2243
TseI	GCWGC	5 cut(s)	1240, 1385, 1480, 1550, 1832
Tsp45I	GTSAC	5 cut(s)	303, 1391, 1453, 1536, 2243
TspDTI	ATGAA	8 cut(s)	179, 597, 912, 1454, 1533, 1634, 1820, 2004
TspGWI	ACGGA	1 cut(s)	1573
TspRI	CASTG	6 cut(s)	548, 603, 1219, 1954, 2001, 2176
Van91I	CCANNNNNTGG	1 cut(s)	1010
XapI	RAATTY	8 cut(s)	166, 442, 928, 1224, 1249, 1866, 2276, 2377
XceI	RCATGY	6 cut(s)	485, 747, 1367, 1392, 1534, 1685
XcmI	CCANNNNNNNNNTGG	2 cut(s)	544, 1169
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	2 cut(s)	790, 2260
XspI	CTAG	4 cut(s)	14, 239, 966, 1430
ZrmI	AGTACT	2 cut(s)	293, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.