Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00250

Orthogroup ID

OG0001709

Physical Location & Seq

Genomic Coordinates Reverse (-)

36422 .. 37752

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAAAGTATGGTTTATGCCAATCAGTGTTTGGAATTGATGGAGCGACAAAAGGTGGGGAAGAATGAAGTTACATATGCACTGCTTCTCAAGCTTGCAGTTTGGCAACAAAACCTGTCTGTAGCCCGTGAACTTTGGAAGGACTATATCAAACACTACAGTCTGAGCATTATCCCTCTGCAAAAGTTTCTTTTGTCCTTTAGTAAGTTGGGAGATTTAAAATCTGCATGCAAGACATTGCAATATATGGTGGCTTTAGTCATCAGGGGAAAGGCTTCTGTTAATAAATCTATTAAGGGAAAGTTGTATTCTTCAAGATTGGACATTCCTATACCTTTGAACTGCGAATTAGGCTTGAAGAAACTTAATTTGGAGGAGAATGAACAGTCTGTCCCTTCCAGATACTGCGAGAATTTGGATGGCCATGTTGTTAGTGCGGATCAATGCACTAGTTTTGGCTTGGGTATTGGAGAAACTAAGAGTGTTCCAGCGGATGGTTTTAATATTGATATAAGTACTCCTGTTATGGAGCTTTTGAGATGTTCGTACACGAACTTGATATATGCTTGTGCAGAATTAAGAAATGGTGGCCTGGCTGAGCAGTTAGTCCTACAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

206

Amino Acids

23.04

Weight (kDa)

8.41

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76280 AT1G76280 AT1G76280 AT1G76280 AT1G76280
fragaria_vesca	FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510
malus_domestica	MD08G1002500.v1.1
prunus_persica	Prupe.2G013700_v2.0.a1 Prupe.2G013700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0270441 RchiOBHm_Chr6g0304231
rosa_laevigata	RLG00000011004 RLG00000013792 RLG00000035378
rosa_multiflora	Rmu_sc0009479.1_g000010 Rmu_ssc0000218.1_g000015
rosa_roxburghii	Rroxscaffold_7G00163950 Rroxscaffold_7G00197930
rosa_rugosa	Rorug05G0331600 Rorug05G0331700 Rorug06G0329000
rosa_samantha	Rh5AG395800 Rh6AG173300 Rh6AG442800 Rh6BG177200 Rh6BG459900 Rh6CG173000 Rh6CG455200 Rh6DG165400 Rh6DG442200
rosa_wichuraiana	Rw0G006810 Rw5G037260 Rw6G014750 Rw6G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AciI	CCGC	2 cut(s)	437, 491
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	2 cut(s)	517, 548
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	315, 340, 358
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	2 cut(s)	94, 532
AluI	AGCT	2 cut(s)	94, 532
AlwI	GGATC	1 cut(s)	447
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	2 cut(s)	421, 589
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	423
BccI	CCATC	3 cut(s)	34, 413, 488
BciT130I	CCWGG	1 cut(s)	593
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	3 cut(s)	120, 157, 611
BlpI	GCTNAGC	1 cut(s)	597
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	593
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	593
BseGI	GGATG	2 cut(s)	424, 499
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	155, 588
BseRI	GAGGAG	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	423, 591
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	423, 591
Bsp143I	GATC	1 cut(s)	439
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	2 cut(s)	437, 491
BspANI	GGCC	2 cut(s)	423, 591
BspCNI	CTCAG	2 cut(s)	156, 589
BspPI	GGATC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	236
BssMI	GATC	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	161, 387
BstC8I	GCNNGC	2 cut(s)	96, 229
BstDEI	CTNAG	3 cut(s)	164, 477, 597
BstF5I	GGATG	2 cut(s)	424, 499
BstKTI	GATC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 351
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	3 cut(s)	120, 157, 611
BsuRI	GGCC	2 cut(s)	423, 591
BtsCI	GGATG	2 cut(s)	424, 499
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	32, 80
Cac8I	GCNNGC	2 cut(s)	96, 229
CaiI	CAGNNNCTG	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	516, 547
CviAII	CATG	2 cut(s)	228, 425
CviQI	GTAC	2 cut(s)	516, 547
DdeI	CTNAG	3 cut(s)	164, 477, 597
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	231, 428
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	227, 424
FauNDI	CATATG	1 cut(s)	76
FokI	GGATG	2 cut(s)	431, 506
FspBI	CTAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	423, 591
Hin1II	CATG	2 cut(s)	231, 428
HindIII	AAGCTT	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	131, 549
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	315, 399
Hpy8I	GTNNAC	2 cut(s)	131, 549
HpyAV	CCTTC	2 cut(s)	133, 405
HpyCH4III	ACNGT	2 cut(s)	161, 387
HpyCH4V	TGCA	9 cut(s)	4, 80, 98, 181, 227, 231, 241, 447, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 351
HpyF3I	CTNAG	3 cut(s)	164, 477, 597
Hsp92II	CATG	2 cut(s)	231, 428
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	43, 529
LpnPI	CCDG	8 cut(s)	128, 250, 412, 501, 534, 578, 599, 605
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	3 cut(s)	73, 303, 370
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	5 cut(s)	35, 347, 367, 412, 575
MluNI	TGGCCA	1 cut(s)	423
MnlI	CCTC	2 cut(s)	186, 367
Mox20I	TGGCCA	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	6 cut(s)	218, 282, 294, 366, 501, 578
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	91, 351
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	231, 428
NspI	RCATGY	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	517, 548
RsaNI	GTAC	2 cut(s)	516, 547
SaqAI	TTAA	6 cut(s)	218, 282, 294, 366, 501, 578
Sau3AI	GATC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	593
SetI	ASST	6 cut(s)	57, 96, 117, 337, 534, 618
SfcI	CTRYAG	3 cut(s)	120, 157, 611
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SpeI	ACTAGT	1 cut(s)	449
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	5 cut(s)	35, 347, 367, 412, 575
SsiI	CCGC	2 cut(s)	437, 491
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	161, 387
TasI	AATT	5 cut(s)	35, 347, 367, 412, 575
TatI	WGTACW	1 cut(s)	515
Tru1I	TTAA	6 cut(s)	218, 282, 294, 366, 501, 578
Tru9I	TTAA	6 cut(s)	218, 282, 294, 366, 501, 578
TscAI	CASTG	2 cut(s)	32, 87
TspDTI	ATGAA	2 cut(s)	81, 396
TspRI	CASTG	2 cut(s)	32, 87
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.