Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001709

Physical Location & Seq

Genomic Coordinates Reverse (-)

40181459 .. 40182079

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTTCAAGAACTTCAAGCCTCAAATTCTTCTCACTACTAATTTCTTCACTTGCCATTGTTCAAATGGCAACCGCAGACCCGGACATTCTTACCGACTTCATTGCCCCAAATAAAACAGTAGATGGAAACTTCTTCACATTCACGGGAATGCGTGTTCTTGTTGGTGGAGACGAGCCTAAAAACTTCACAGTATTGAAGGCAACCTTGGCAGAGTTTCCTGCTCTCAATGGGCAGAGTGTTTCATATGCCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTATTGACGGTACCCTTGAAGTTGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGACAGGCGACCTGTTTGTGTTTCCCAAGGGCCTTGTTCACTACCAGTACAATGCCGATTCACAAAACTCGGCTCTGGCAGTTTCTGCCTTTGGAAGTGCAAGTGCCGGAACTGTGTCAATCCCTACCACTTTGTTCGCCACCAACATCGATGACAATGTCTTGGCTTTGTCCTTCAAGACTGATGTAGCCACCATTCAAAAGCTCAAGGCTGGTCTTGCTCCCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

206

Amino Acids

21.94

Weight (kDa)

5.23

Isoelectric Point (pI)

22.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 195	3e-31	Cupin
Cupin_2	PF07883	85 - 151	1.5e-12	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76280 AT1G76280 AT1G76280 AT1G76280 AT1G76280
fragaria_vesca	FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510
malus_domestica	MD08G1002500.v1.1
prunus_persica	Prupe.2G013700_v2.0.a1 Prupe.2G013700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0270441 RchiOBHm_Chr6g0304231
rosa_laevigata	RLG00000011004 RLG00000013792 RLG00000035378
rosa_multiflora	Rmu_sc0009479.1_g000010 Rmu_ssc0000218.1_g000015
rosa_roxburghii	Rroxscaffold_7G00163950 Rroxscaffold_7G00197930
rosa_rugosa	Rorug05G0331600 Rorug05G0331700 Rorug06G0329000
rosa_samantha	Rh5AG395800 Rh6AG173300 Rh6AG442800 Rh6BG177200 Rh6BG459900 Rh6CG173000 Rh6CG455200 Rh6DG165400 Rh6DG442200
rosa_wichuraiana	Rw0G006810 Rw5G037260 Rw6G014750 Rw6G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	26, 260
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	334, 437
AgsI	TTSAA	8 cut(s)	9, 18, 65, 199, 260, 341, 565, 587
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	3 cut(s)	269, 313, 592
AluI	AGCT	3 cut(s)	269, 313, 592
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	418
ApoI	RAATTY	2 cut(s)	26, 260
Asp718I	GGTACC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	165
BlpI	GCTNAGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	207, 414
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	207, 414
BseGI	GGATG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	300, 392
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	83, 495
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	301, 391
BspDI	ATCGAT	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	207, 414
BssT1I	CCWWGG	2 cut(s)	207, 414
Bst4CI	ACNGT	4 cut(s)	121, 193, 332, 502
Bst6I	CTCTTC	2 cut(s)	323, 390
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	309, 378
BstF5I	GGATG	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 473, 605
BstSCI	CCNGG	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	333, 436
CviAII	CATG	1 cut(s)	618
CviQI	GTAC	2 cut(s)	333, 436
DdeI	CTNAG	2 cut(s)	309, 378
Eam1104I	CTCTTC	2 cut(s)	323, 390
EarI	CTCTTC	2 cut(s)	323, 390
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	207, 414
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	207, 414
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	207, 414
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	621
FaiI	YATR	3 cut(s)	247, 249, 619
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	1 cut(s)	617
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	354
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	2 cut(s)	83, 495
Hin1II	CATG	1 cut(s)	621
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	382, 446
HpaII	CCGG	2 cut(s)	83, 495
Hpy166II	GTNNAC	2 cut(s)	355, 427
Hpy188I	TCNGA	2 cut(s)	381, 390
Hpy188III	TCNNGA	2 cut(s)	9, 565
Hpy8I	GTNNAC	2 cut(s)	355, 427
HpyAV	CCTTC	2 cut(s)	193, 571
HpyCH4III	ACNGT	4 cut(s)	121, 193, 332, 502
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 473, 605
HpyF3I	CTNAG	2 cut(s)	309, 378
Hsp92II	CATG	1 cut(s)	621
KpnI	GGTACC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	318, 613
MboII	GAAGA	5 cut(s)	22, 39, 127, 310, 377
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	26, 42, 260
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	4 cut(s)	32, 309, 326, 380
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	83, 495
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	209, 473, 605
NciI	CCSGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	247
NlaIII	CATG	1 cut(s)	621
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	437
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	446
PflFI	GACNNNGTC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	473
PsyI	GACNNNGTC	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	334, 437
RsaNI	GTAC	2 cut(s)	333, 436
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	353
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	6 cut(s)	209, 271, 315, 372, 402, 594
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	3 cut(s)	26, 42, 260
SsiI	CCGC	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	207, 414
TaaI	ACNGT	4 cut(s)	121, 193, 332, 502
TaqI	TCGA	2 cut(s)	354, 537
TasI	AATT	3 cut(s)	26, 42, 260
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	91, 234
Tth111I	GACNNNGTC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	26, 260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.