Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001709

Physical Location & Seq

Genomic Coordinates Reverse (-)

61769701 .. 61775471

Gene Structure 5771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG442200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGCACAGACCTCTGGCCAGGATTCCATTGCGCTCCATTGCAGAATCATTTTCACACCTCCACCATGGACGAAGAATTGTTGCTGAGAGACTGGACTATTCTCGAACTCTTACTATTTCAACTGGTCGAGATGTTTTATTGAATGGAGCAGAATCAACTCCGATGAATTTGCAGATACAAATTGTTAAGGCTCTGAAATTGGGTAAAAGAGGCGAAGCCTCCAATCTTCTTTTGAGTCTAGGCCAGGGAAATGACGTCAAAGGAGCTGATGATTTCGTGCATATTCTACAGTACTGTGCCACGTCACCTGATCCTTTGTTTGTCATGGAAGCTTGGACAATAATGGATGAGAAAGAGATTAGTCTGAATAGCCTTTGCTCCGCTCTTATGGTGGAAGCTCTATGTAATGGAGGATACTTGGAGGAGGCATTAAAATTGATAAATTTTCTTAAAGAAAGTCATGGTATCTATCCGGTTCTACATGTCTACAACACTTTTTTGAAAGCTTGTACCAAAATGCAAAGTATGGTTTATGCCAATCAGTGTTTGGAATTGATGGAGCGACAAAAGGTGGGGAAGAATGAAGTTACATATGCACTGCTTCTCAAGCTTGCAGTTTGGCAACAAAACCTGTCTGTAGCCCATGAACTTTGGAAGGACTATATCAAACACTACAGTCTGAGCATTATCCCTCTGCAAAAGTTTCTTTTGTCCTTTAGTAAGTTGGGAGATTTAAAATCTGCATGCAAGACATTGCAATATATGGTGGCTTTAGTCATCAGGGGAAAGGCTTCTGTTAATAAATCTATTAAGGGAAAGTTGTATTCTTCAAGATTGGACATTCCTATACCTTTGAACTGTGAATTAGGCTTGAAGAAACTTAATTTGGAGGAGAATGAACAGTCTGTCCCTTCCAGATACTGCGAGAATTTGGATGGCCATGTTGTTAGTGCGGATCAATGCACTAGTTTTGGCTTGGGTTTTGGAGAAACTAAGAGTGTTCCAGCGGATGGTCTTAATATTGATATAAGTACTCCTGTTATGGAGCTTTTGAGATGTTCGTTCACGAACTTGATATATGCTTGTGCAGAATTAAGAAATGGTGGCCTGGCTGAGCAGTTAGTCCTACAGTTGAAAAGTATGCAGCAGAGAAATTTGAAGCCATATGATCGCACTCTTGCAACCCTTTCAATAGGTTGTAGCAAGGCATTAGAATTGGGTTTAGCTGAGACTCTGCTGGATCAAATATCTGTGTATTCACGTCCACATGCTTTTAATGCTTTTCTTGCAGCATGTGACATTATGGATCAACCTGAAAATGCCGTGCGGATGCTAGCTAAAATGAAACATCTACAAGTCACGCCAAATATATGGACATATGAGCAGCTGCTTTCCTTATTTGGTAACGTGAATGCCCCATATGAAGAGGGCAACATGTTGTCACAGGTAGATGCTGCTAAACGGATTAAAGCTATAGAAATGGATATGGCGAACTATGGCATTCAGCACAGTTTTGTGTCAATGAATAACTTGCTGAAAGCCCTTGGAGCAGAAGGGATGACAAGAGAGCTGATCCATTATTTACATGTGGCGGAGAATCTTTTTTGTCGTAATCACATTTATCTGGGAACACCTATCTATAATACGGTGTTGCATTCACTTGTTGAGAGTGAGGAAAGCCAAATGGCAATTAAGATGTTTAAAAACATGAAGTCATGTGGTGTCCCGGCAGATGCTGCAACTTATACTATAATGATTAAGTGTTGTAAAATTCTCAGATGTTATAGATCTGCTTGTGCATTGGTTTCTATGATGTTGCGAGATGGCTTTTACCCTCTAACAATAACTTACACTGCTCTCATAAAGACTTTGTTGGAAGATGATATCATTGATGAAGCACTGAATCTTTTGGATCAAGCCAGCTCAGAAGGGAATAAACTTGATACTTTAGTTTTCAATACCATTCTTCGAAAAGCCTGTGAAAAGGAACTGATTGATGTAGTTGAGTTTCTTGTTGAGTGGATGCACCAAGAAAATATCCGGCCTGATTCGGGGACGTGCTCTTCTGTTTTCACTGCATATACGAACTGTGGTTTTTACAGCACAGCCATGGAAGCATTGCAGGTTTTGAGTATGCGTATAATATGTGACGAAGATGGAAGCTGTTCAGAAAAGACAAAATTTGAGGACGACTATATCTTTGCTGAAGACGAGGGAGCTGAATCCCGTATAATCCAGCATTTTAAAGATTCTAAAGAGGACTTGGCTGTTGCCCTACTGAATTTAAGATGGTGTGCGGTGCTTGGCTTCCCAATTTCTTGGTTGCCTGATCAAAGCCCGTGGGCAAAAAGACTCTCAACTAACTATACTGCCAGGATAGGAGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

796

Amino Acids

89.27

Weight (kDa)

6.0

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	546 - 589	9.7e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76280 AT1G76280 AT1G76280 AT1G76280 AT1G76280
fragaria_vesca	FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510 FvH4_2g37510
malus_domestica	MD08G1002500.v1.1
prunus_persica	Prupe.2G013700_v2.0.a1 Prupe.2G013700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0270441 RchiOBHm_Chr6g0304231
rosa_laevigata	RLG00000011004 RLG00000013792 RLG00000035378
rosa_multiflora	Rmu_sc0009479.1_g000010 Rmu_ssc0000218.1_g000015
rosa_roxburghii	Rroxscaffold_7G00163950 Rroxscaffold_7G00197930
rosa_rugosa	Rorug05G0331600 Rorug05G0331700 Rorug06G0329000
rosa_samantha	Rh5AG395800 Rh6AG173300 Rh6AG442800 Rh6BG177200 Rh6BG459900 Rh6CG173000 Rh6CG455200 Rh6DG165400 Rh6DG442200
rosa_wichuraiana	Rw0G006810 Rw5G037260 Rw6G014750 Rw6G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	2113
AccB7I	CCANNNNNTGG	1 cut(s)	1010
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	6 cut(s)	381, 953, 1007, 1327, 1592, 2297
AclWI	GGATC	6 cut(s)	305, 963, 1248, 1314, 1567, 1920
AcoI	YGGCCR	2 cut(s)	15, 937
AcsI	RAATTY	7 cut(s)	166, 442, 928, 1153, 1770, 2180, 2281
AcuI	CTGAAG	1 cut(s)	2226
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	3 cut(s)	293, 511, 1033
AfiI	CCNNNNNNNGG	2 cut(s)	1010, 2051
AflIII	ACRYGT	3 cut(s)	481, 1434, 1585
AhlI	ACTAGT	1 cut(s)	965
AjiI	CACGTC	3 cut(s)	303, 1262, 2058
AjnI	CCWGG	4 cut(s)	17, 243, 1107, 2372
AjuI	GAANNNNNNNTTGG	2 cut(s)	869, 901
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
Alw21I	GWGCWC	1 cut(s)	2063
Alw26I	GTCTC	2 cut(s)	82, 1223
AlwI	GGATC	6 cut(s)	305, 963, 1248, 1314, 1567, 1920
AlwNI	CAGNNNCTG	2 cut(s)	921, 1736
AoxI	GGCC	5 cut(s)	15, 241, 937, 1105, 2042
ApeKI	GCWGC	6 cut(s)	1144, 1289, 1384, 1387, 1454, 1736
ApoI	RAATTY	7 cut(s)	166, 442, 928, 1153, 1770, 2180, 2281
ArsI	GACNNNNNNTTYG	2 cut(s)	2183, 2215
Asp700I	GAANNNNTTC	2 cut(s)	790, 2164
AspLEI	GCGC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	1727
AsuHPI	GGTGA	1 cut(s)	297
AsuII	TTCGAA	1 cut(s)	1969
AsuNHI	GCTAGC	1 cut(s)	1333
BaeI	ACNNNNGTAYC	2 cut(s)	1935, 1968
BalI	TGGCCA	2 cut(s)	17, 939
BbsI	GAAGAC	1 cut(s)	2214
Bbv12I	GWGCWC	1 cut(s)	2063
BbvI	GCAGC	6 cut(s)	1156, 1301, 1374, 1396, 1441, 1723
BccI	CCATC	6 cut(s)	550, 929, 1004, 1817, 2150, 2283
BceAI	ACGGC	1 cut(s)	1307
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	4 cut(s)	19, 245, 1109, 2374
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	2329
BcnI	CCSGG	1 cut(s)	1727
BcoDI	GTCTC	2 cut(s)	82, 1223
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	3 cut(s)	239, 966, 1334
BfmI	CTRYAG	5 cut(s)	287, 636, 673, 1127, 1473
BfuAI	ACCTGC	1 cut(s)	2113
BfuI	GTATCC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	1787
BisI	GCNGC	6 cut(s)	1145, 1290, 1385, 1388, 1455, 1737
BlpI	GCTNAGC	1 cut(s)	1113
BlsI	GCNGC	6 cut(s)	1146, 1291, 1386, 1389, 1456, 1738
BmcAI	AGTACT	2 cut(s)	293, 1033
Bme1390I	CCNGG	5 cut(s)	19, 245, 1109, 1727, 2374
BmgBI	CACGTC	3 cut(s)	303, 1262, 2058
BmrFI	CCNGG	5 cut(s)	19, 245, 1109, 1727, 2374
BmsI	GCATC	4 cut(s)	1320, 1441, 1723, 2013
BmtI	GCTAGC	1 cut(s)	1337
BpiI	GAAGAC	1 cut(s)	2214
Bpu1102I	GCTNAGC	1 cut(s)	1113
Bpu14I	TTCGAA	1 cut(s)	1969
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	1727
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	64, 244, 1543, 2109, 2339
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	2 cut(s)	1010, 2051
Bse1I	ACTGG	2 cut(s)	96, 127
Bse3DI	GCAATG	4 cut(s)	26, 36, 752, 2117
BseBI	CCWGG	4 cut(s)	19, 245, 1109, 2374
BseDI	CCNNGG	5 cut(s)	64, 244, 1543, 2109, 2339
BseGI	GGATG	6 cut(s)	352, 940, 1015, 1335, 1563, 2028
BseLI	CCNNNNNNNGG	2 cut(s)	1010, 2051
BseMI	GCAATG	4 cut(s)	26, 36, 752, 2117
BseMII	CTCAG	6 cut(s)	75, 671, 1104, 1218, 1789, 1938
BseNI	ACTGG	2 cut(s)	96, 127
BseRI	GAGGAG	2 cut(s)	437, 905
BseXI	GCAGC	6 cut(s)	1156, 1301, 1374, 1396, 1441, 1723
BsgI	GTGCAG	1 cut(s)	1107
BshFI	GGCC	5 cut(s)	17, 243, 939, 1107, 2044
BsiHKAI	GWGCWC	1 cut(s)	2063
BsiSI	CCGG	3 cut(s)	473, 1727, 2041
BslFI	GGGAC	3 cut(s)	893, 1709, 2068
BslI	CCNNNNNNNGG	2 cut(s)	1010, 2051
BsmAI	GTCTC	2 cut(s)	82, 1223
BsmFI	GGGAC	3 cut(s)	893, 1709, 2068
BsmI	GAATGC	3 cut(s)	1417, 1500, 1654
BsnI	GGCC	5 cut(s)	17, 243, 939, 1107, 2044
Bsp119I	TTCGAA	1 cut(s)	1969
Bsp1286I	GDGCHC	1 cut(s)	2063
Bsp143I	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
Bsp1720I	GCTNAGC	1 cut(s)	1113
Bsp19I	CCATGG	2 cut(s)	64, 2109
BspACI	CCGC	6 cut(s)	381, 953, 1007, 1327, 1592, 2297
BspANI	GGCC	5 cut(s)	17, 243, 939, 1107, 2044
BspCNI	CTCAG	6 cut(s)	76, 672, 1105, 1219, 1788, 1937
BspMI	ACCTGC	1 cut(s)	2113
BspOI	GCTAGC	1 cut(s)	1337
BspPI	GGATC	6 cut(s)	305, 963, 1248, 1314, 1567, 1920
BspQI	GCTCTTC	1 cut(s)	2068
BspT104I	TTCGAA	1 cut(s)	1969
BsrBI	CCGCTC	1 cut(s)	383
BsrDI	GCAATG	4 cut(s)	26, 36, 752, 2117
BsrI	ACTGG	2 cut(s)	96, 127
BssECI	CCNNGG	5 cut(s)	64, 244, 1543, 2109, 2339
BssMI	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	3 cut(s)	64, 1543, 2109
Bst2UI	CCWGG	4 cut(s)	19, 245, 1109, 2374
Bst4CI	ACNGT	9 cut(s)	291, 296, 677, 860, 903, 1131, 1511, 1648, 2090
Bst6I	CTCTTC	2 cut(s)	1419, 2068
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	1736
BstBI	TTCGAA	1 cut(s)	1969
BstC8I	GCNNGC	4 cut(s)	612, 745, 1335, 1921
BstDEI	CTNAG	7 cut(s)	84, 680, 993, 1113, 1227, 1775, 1924
BstDSI	CCRYGG	3 cut(s)	64, 2109, 2339
BstF5I	GGATG	6 cut(s)	352, 940, 1015, 1335, 1563, 2028
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	9 cut(s)	313, 958, 1171, 1243, 1309, 1575, 1790, 1915, 2332
BstMAI	GTCTC	2 cut(s)	82, 1223
BstMBI	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
BstMWI	GCNNNNNNNGC	6 cut(s)	607, 1277, 1286, 1547, 1736, 2114
BstNI	CCWGG	4 cut(s)	19, 245, 1109, 2374
BstNSI	RCATGY	6 cut(s)	485, 747, 1271, 1296, 1438, 1589
BstSCI	CCNGG	5 cut(s)	17, 243, 1107, 1725, 2372
BstSFI	CTRYAG	5 cut(s)	287, 636, 673, 1127, 1473
BstV1I	GCAGC	6 cut(s)	1156, 1301, 1374, 1396, 1441, 1723
BstV2I	GAAGAC	1 cut(s)	2214
BstX2I	RGATCY	1 cut(s)	1787
BstXI	CCANNNNNNTGG	2 cut(s)	1371, 2319
BstYI	RGATCY	1 cut(s)	1787
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	5 cut(s)	17, 243, 939, 1107, 2044
BtgI	CCRYGG	3 cut(s)	64, 2109, 2339
BtrI	CACGTC	3 cut(s)	303, 1262, 2058
BtsCI	GGATG	6 cut(s)	352, 940, 1015, 1335, 1563, 2028
BtsI	GCAGTG	3 cut(s)	596, 1851, 2073
BtsIMutI	CAGTG	5 cut(s)	548, 596, 1851, 1898, 2073
BveI	ACCTGC	1 cut(s)	2113
Cac8I	GCNNGC	4 cut(s)	612, 745, 1335, 1921
CaiI	CAGNNNCTG	2 cut(s)	921, 1736
CfoI	GCGC	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	292, 510, 1032
CspCI	CAANNNNNGTGG	2 cut(s)	2321, 2356
CviQI	GTAC	3 cut(s)	292, 510, 1032
DdeI	CTNAG	7 cut(s)	84, 680, 993, 1113, 1227, 1775, 1924
DpnI	GATC	9 cut(s)	312, 957, 1170, 1242, 1308, 1574, 1789, 1914, 2331
DpnII	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
DraI	TTTAAA	3 cut(s)	735, 1702, 2245
EaeI	YGGCCR	2 cut(s)	15, 937
Eam1104I	CTCTTC	2 cut(s)	1419, 2068
EarI	CTCTTC	2 cut(s)	1419, 2068
EciI	GGCGGA	1 cut(s)	1607
Eco130I	CCWWGG	3 cut(s)	64, 1543, 2109
Eco32I	GATATC	1 cut(s)	1885
Eco57I	CTGAAG	1 cut(s)	2226
EcoRII	CCWGG	4 cut(s)	17, 243, 1107, 2372
EcoRV	GATATC	1 cut(s)	1885
EcoT14I	CCWWGG	3 cut(s)	64, 1543, 2109
ErhI	CCWWGG	3 cut(s)	64, 1543, 2109
FaqI	GGGAC	3 cut(s)	893, 1709, 2068
FauNDI	CATATG	4 cut(s)	592, 1165, 1378, 1420
FbaI	TGATCA	1 cut(s)	2329
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	6 cut(s)	1145, 1290, 1385, 1388, 1455, 1737
FokI	GGATG	6 cut(s)	359, 947, 1022, 1342, 1570, 2035
Fsp4HI	GCNGC	6 cut(s)	1145, 1290, 1385, 1388, 1455, 1737
FspBI	CTAG	3 cut(s)	239, 966, 1334
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	6 cut(s)	1145, 1290, 1385, 1388, 1455, 1737
HaeIII	GGCC	5 cut(s)	17, 243, 939, 1107, 2044
HapII	CCGG	3 cut(s)	473, 1727, 2041
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	3 cut(s)	330, 504, 608
HpaII	CCGG	3 cut(s)	473, 1727, 2041
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	487, 1065, 1265
Hpy188I	TCNGA	7 cut(s)	162, 195, 366, 681, 1778, 1927, 2170
Hpy188III	TCNNGA	5 cut(s)	102, 128, 831, 915, 1066
Hpy8I	GTNNAC	3 cut(s)	487, 1065, 1265
HpyAV	CCTTC	4 cut(s)	649, 921, 1547, 1922
HpyCH4III	ACNGT	9 cut(s)	291, 296, 677, 860, 903, 1131, 1511, 1648, 2090
HpyCH4IV	ACGT	5 cut(s)	255, 302, 1261, 1407, 2057
HpyF10VI	GCNNNNNNNGC	6 cut(s)	607, 1277, 1286, 1547, 1736, 2114
HpyF3I	CTNAG	7 cut(s)	84, 680, 993, 1113, 1227, 1775, 1924
HpySE526I	ACGT	5 cut(s)	255, 302, 1261, 1407, 2057
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	2329
Kzo9I	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
LguI	GCTCTTC	1 cut(s)	2068
LmnI	GCTCC	9 cut(s)	38, 146, 263, 383, 559, 1045, 1547, 2216, 2381
Lsp1109I	GCAGC	6 cut(s)	1156, 1301, 1374, 1396, 1441, 1723
LweI	GCATC	4 cut(s)	1320, 1441, 1723, 2013
MaeI	CTAG	3 cut(s)	239, 966, 1334
MaeII	ACGT	5 cut(s)	255, 302, 1261, 1407, 2057
MaeIII	GTNAC	7 cut(s)	303, 586, 1295, 1357, 1403, 1440, 2147
MalI	GATC	9 cut(s)	312, 957, 1170, 1242, 1308, 1574, 1789, 1914, 2331
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
MflI	RGATCY	1 cut(s)	1787
MhlI	GDGCHC	1 cut(s)	2063
MlsI	TGGCCA	2 cut(s)	17, 939
MluNI	TGGCCA	2 cut(s)	17, 939
MlyI	GAGTC	3 cut(s)	244, 1225, 2346
MmeI	TCCRAC	1 cut(s)	1854
Mox20I	TGGCCA	2 cut(s)	17, 939
MroXI	GAANNNNTTC	2 cut(s)	790, 2164
MscI	TGGCCA	2 cut(s)	17, 939
MslI	CAYNNNNRTG	1 cut(s)	2108
Msp20I	TGGCCA	2 cut(s)	17, 939
MspA1I	CMGCKG	2 cut(s)	1007, 1387
MspI	CCGG	3 cut(s)	473, 1727, 2041
MspR9I	CCNGG	5 cut(s)	19, 245, 1109, 1727, 2374
Mva1269I	GAATGC	3 cut(s)	1417, 1500, 1654
MvaI	CCWGG	4 cut(s)	19, 245, 1109, 2374
MwoI	GCNNNNNNNGC	6 cut(s)	607, 1277, 1286, 1547, 1736, 2114
NciI	CCSGG	1 cut(s)	1727
NcoI	CCATGG	2 cut(s)	64, 2109
NdeI	CATATG	4 cut(s)	592, 1165, 1378, 1420
NdeII	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
NheI	GCTAGC	1 cut(s)	1333
NmuCI	GTSAC	5 cut(s)	303, 1295, 1357, 1440, 2147
NspI	RCATGY	6 cut(s)	485, 747, 1271, 1296, 1438, 1589
NspV	TTCGAA	1 cut(s)	1969
PaeI	GCATGC	1 cut(s)	747
PciI	ACATGT	3 cut(s)	481, 1434, 1585
PciSI	GCTCTTC	1 cut(s)	2068
PctI	GAATGC	3 cut(s)	1417, 1500, 1654
PdmI	GAANNNNTTC	2 cut(s)	790, 2164
PfeI	GAWTC	8 cut(s)	22, 44, 152, 1597, 1903, 2048, 2222, 2249
PflMI	CCANNNNNTGG	1 cut(s)	1010
PkrI	GCNGC	6 cut(s)	1146, 1291, 1386, 1389, 1456, 1738
PleI	GAGTC	3 cut(s)	243, 1225, 2346
PpsI	GAGTC	3 cut(s)	243, 1225, 2346
PscI	ACATGT	3 cut(s)	481, 1434, 1585
Psp6I	CCWGG	4 cut(s)	17, 243, 1107, 2372
PspGI	CCWGG	4 cut(s)	17, 243, 1107, 2372
PstNI	CAGNNNCTG	2 cut(s)	921, 1736
PsuI	RGATCY	1 cut(s)	1787
PvuII	CAGCTG	1 cut(s)	1387
RsaI	GTAC	3 cut(s)	293, 511, 1033
RsaNI	GTAC	3 cut(s)	292, 510, 1032
RseI	CAYNNNNRTG	1 cut(s)	2108
SapI	GCTCTTC	1 cut(s)	2068
SatI	GCNGC	6 cut(s)	1145, 1290, 1385, 1388, 1455, 1737
Sau3AI	GATC	9 cut(s)	310, 955, 1168, 1240, 1306, 1572, 1787, 1912, 2329
ScaI	AGTACT	2 cut(s)	293, 1033
SchI	GAGTC	3 cut(s)	244, 1225, 2346
ScrFI	CCNGG	5 cut(s)	19, 245, 1109, 1727, 2374
SduI	GDGCHC	1 cut(s)	2063
SfaNI	GCATC	4 cut(s)	1320, 1441, 1723, 2013
SfcI	CTRYAG	5 cut(s)	287, 636, 673, 1127, 1473
SfuI	TTCGAA	1 cut(s)	1969
SmiMI	CAYNNNNRTG	1 cut(s)	2108
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	965
SphI	GCATGC	1 cut(s)	747
SsiI	CCGC	6 cut(s)	381, 953, 1007, 1327, 1592, 2297
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	3 cut(s)	239, 966, 1334
StyD4I	CCNGG	5 cut(s)	17, 243, 1107, 1725, 2372
StyI	CCWWGG	3 cut(s)	64, 1543, 2109
TaaI	ACNGT	9 cut(s)	291, 296, 677, 860, 903, 1131, 1511, 1648, 2090
TaiI	ACGT	5 cut(s)	258, 305, 1264, 1410, 2060
TaqI	TCGA	3 cut(s)	103, 127, 1969
TatI	WGTACW	2 cut(s)	291, 1031
TfiI	GAWTC	8 cut(s)	22, 44, 152, 1597, 1903, 2048, 2222, 2249
TscAI	CASTG	5 cut(s)	548, 603, 1858, 1905, 2080
TseFI	GTSAC	5 cut(s)	303, 1295, 1357, 1440, 2147
TseI	GCWGC	6 cut(s)	1144, 1289, 1384, 1387, 1454, 1736
Tsp45I	GTSAC	5 cut(s)	303, 1295, 1357, 1440, 2147
TspDTI	ATGAA	9 cut(s)	179, 597, 660, 912, 1358, 1437, 1538, 1724, 1908
TspGWI	ACGGA	1 cut(s)	1477
TspRI	CASTG	5 cut(s)	548, 603, 1858, 1905, 2080
Van91I	CCANNNNNTGG	1 cut(s)	1010
XapI	RAATTY	7 cut(s)	166, 442, 928, 1153, 1770, 2180, 2281
XceI	RCATGY	6 cut(s)	485, 747, 1271, 1296, 1438, 1589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	2 cut(s)	790, 2164
XspI	CTAG	3 cut(s)	239, 966, 1334
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	2 cut(s)	293, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.